| Staphylococcus succinus | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Phylum: | Bacillota |
| Class: | Bacilli |
| Order: | Bacillales |
| Family: | Staphylococcaceae |
| Genus: | Staphylococcus |
| Species: | S. succinus |
| Binomial name | |
| Staphylococcus succinus Lambert et al. 1998 | |
Staphylococcus succinus is a Gram-positive coccoid bacterium belonging to the genus Staphylococcus .
This species was first described in 1998 and was isolated from 25- to 35-million-year-old Dominican amber. [1]
Two subspecies are recognised:[ citation needed ]
This species has been isolated from cheese, [2] sausages [3] and the skin of healthy wild animals, [4] and wild caught Drosophila. [5]
Staphylococcus succinus subsp. succinus PK-1 is a crucial pathogen to study the evolution of immune response, this pathogen was isolated by Karan Singh during his PhD at the Indian Institute of Science Education and Research Mohali. Other species has been isolated from human clinical material, but its role in pathogenesis has yet to be clarified. [6]
Lactococcus is a genus of lactic acid bacteria that were formerly included in the genus Streptococcus Group N1. They are known as homofermenters meaning that they produce a single product, lactic acid in this case, as the major or only product of glucose fermentation. Their homofermentative character can be altered by adjusting environmental conditions such as pH, glucose concentration, and nutrient limitation. They are gram-positive, catalase-negative, non-motile cocci that are found singly, in pairs, or in chains. The genus contains strains known to grow at or below 7˚C.
Halomonadaceae is a family of halophilic Pseudomonadota.
Staphylococcus haemolyticus is a member of the coagulase-negative staphylococci (CoNS). It is part of the skin flora of humans, and its largest populations are usually found at the axillae, perineum, and inguinal areas. S. haemolyticus also colonizes primates and domestic animals. It is a well-known opportunistic pathogen, and is the second-most frequently isolated CoNS. Infections can be localized or systemic, and are often associated with the insertion of medical devices. The highly antibiotic-resistant phenotype and ability to form biofilms make S. haemolyticus a difficult pathogen to treat. Its most closely-related species is Staphylococcus borealis.
Paenibacillus is a genus of facultative anaerobic, endospore-forming bacteria, originally included within the genus Bacillus and then reclassified as a separate genus in 1993. Bacteria belonging to this genus have been detected in a variety of environments, such as: soil, water, rhizosphere, vegetable matter, forage and insect larvae, as well as clinical samples. The name reflects: Latin paene means almost, so the paenibacilli are literally "almost bacilli". The genus includes P. larvae, which causes American foulbrood in honeybees, P. polymyxa, which is capable of fixing nitrogen, so is used in agriculture and horticulture, the Paenibacillus sp. JDR-2 which is a rich source of chemical agents for biotechnology applications, and pattern-forming strains such as P. vortex and P. dendritiformis discovered in the early 90s, which develop complex colonies with intricate architectures as shown in the pictures:
Staphylococcus xylosus is a species of bacteria belonging to the genus Staphylococcus. It is a Gram-positive bacterium that forms clusters of cells. Like most staphylococcal species, it is coagulase-negative and exists as a commensal on the skin of humans and animals and in the environment.
Providencia is genus of Gram-negative, motile bacteria of the family Morganellaceae. It was named after Providence, Rhode Island, where C. A. Stuart and colleagues studied these bacteria at Brown University.
Food microbiology is the study of the microorganisms that inhabit, create, or contaminate food. This includes the study of microorganisms causing food spoilage; pathogens that may cause disease ; microbes used to produce fermented foods such as cheese, yogurt, bread, beer, and wine; and microbes with other useful roles, such as producing probiotics.
Xanthomonas campestris is a bacterium that causes a variety of plant diseases, including "black rot" in cruciferous vegetables and bacterial wilt of turfgrass.
Methanocalculus is a genus of the Methanomicrobiales, and is known to include methanogens.
The genus Lysobacter belongs to the family Xanthomonadaceae within the Gammaproteobacteria and includes at least 46 named species, including: Lysobacter enzymogenes, L. antibioticus, L. gummosus, L. brunescens, L. defluvii, L. niabensis, L. niastensis, L. daejeonensis, L. yangpyeongensis, L. koreensis, L. concretionis, L. spongiicola, and L. capsici. Lysobacter spp. were originally grouped with myxobacteria because they shared the distinctive trait of gliding motility, but they uniquely display a number of traits that distinguish them from other taxonomically and ecologically related microbes including high genomic G+C content and the lack of flagella. The feature of gliding motility alone has piqued the interest of many, since the role of gliding bacteria in soil ecology is poorly understood. In addition, while a number of different mechanisms have been proposed for gliding motility among a wide range of bacterial species, the genetic mechanism in Lysobacter remains unknown. Members of the Lysobacter group have gained broad interest for production of extracellular enzymes. The group is also regarded as a rich source for production of novel antibiotics, such as β-lactams containing substituted side chains, macrocyclic lactams and macrocyclic peptide or depsipeptide antibiotics like the katanosins.
Leifsonia xyli subsp. xyli is the bacterium that causes ratoon stunting disease, a major worldwide disease of sugarcane. It is Gram positive and grows slowly in the laboratory.
Streptococcus equinus is a Gram-positive, nonhemolytic, nonpathogenic, lactic acid bacterium of the genus Streptococcus. It is the principal Streptococcus found in the alimentary canal of a horse, and makes up the majority of the bacterial flora in horse feces. Equivalence with Streptococcus bovis has been contested.
Pediococcus acidilactici is a species of Gram-positive cocci that is often found in pairs or tetrads. P. acidilactici is a homofermentative bacterium that can grow in a wide range of pH, temperature, and osmotic pressure, therefore being able to colonize the digestive tract. It has emerged as a potential probiotic that has shown promising results in animal and human experiments, though some of the results are limited. They are commonly found in fermented vegetables, fermented dairy products, and meat.
Staphylococcus equorum is a gram-positive, coagulase-negative member of the bacterial genus Staphylococcus consisting of clustered cocci. Originally isolated from the skin of healthy horses, this species contains a cell wall similar to that of Staphylococcus xylosus.
Providencia sneebia is a gram-negative species of bacteria first isolated from the hemolymph of fruit flies. It has also been observed to be symbiotic with marine microalgae. The pathogen has been shown to be fatal to fruit flies without triggering a severe immune response. It has been suggested that P. sneebia is capable of active immune evasion. Thioesterases from P. sneebia have been proposed as industrial enzymes in the production of biofuels.
Lactiplantibacillus fabifermentans is a member of the genus Lactiplantibacillus and a type of lactic acid bacteria (LAB), a group of Gram-positive bacteria that produce lactic acid as their major fermented end product and that are often involved in food fermentation. L. fabifermentans was proposed in 2009 as a new species, after the type strain LMG 24284T has been isolated from Ghanaian cocoa fermentation. Analysis of the 16S rRNA gene sequence demonstrated that this species is a member of the Lactobacillus plantarum species group but further analysis demonstrated that it is possible to differentiate it from the nearest neighbors by means of DNA-DNA hybridization experiments, pheS sequence analysis, whole-cell protein electrophoresis, fluorescent amplified fragment length polymorphism analysis and biochemical characterization.
The microbiota are the sum of all symbiotic microorganisms living on or in an organism. The fruit fly Drosophila melanogaster is a model organism and known as one of the most investigated organisms worldwide. The microbiota in flies is less complex than that found in humans. It still has an influence on the fitness of the fly, and it affects different life-history characteristics such as lifespan, resistance against pathogens (immunity) and metabolic processes (digestion). Considering the comprehensive toolkit available for research in Drosophila, analysis of its microbiome could enhance our understanding of similar processes in other types of host-microbiota interactions, including those involving humans. Microbiota plays key roles in the intestinal immune and metabolic responses via their fermentation product, acetate.
Pararhizobium is a genus of Gram-negative soil bacteria that fix nitrogen. Some species of Pararhizobium form an endosymbiotic nitrogen-fixing association with roots of legumes.
Polynucleobacter asymbioticus is an aerobic, catalase- and oxidase-positive, chemo-organotrophic, nonmotile, free-living bacterium of the genus Polynucleobacter. The type strain was isolated from a small pond located in the Austrian Alps in the area of Salzburg and described as a new subspecies of Polynucleobacter necessarius in 2009. The classification of the type strain was hampered by the fact that its closest described relative represented obligate endosymbionts, i.e. P. necessarius, not available as a pure culture suitable for standard tests for delineation of prokaryotic species. Therefore, the strain was preliminarily placed in the subspecies P. necessarius subsp. asymbioticus. Later sequencing of the genome of the type strain revealed that the strain represented a novel species within the genus Polynucleobacter. Therefore, its taxonomic rank was lifted from the subspecies to the species level. Strains of P. asymbioticus dwell as planktonic organisms in acidic, humic-rich freshwater systems. Comparative genome analyses revealed that P. asymbioticus represents an atypical member of the family Burkholderiaceae regarding its small genome size and its passive lifestyle. A recent study used a collection of 37 P. asymbioticus strains isolated from various ponds located in a larger region of the Austrian Alps to gain insights in the evolution of Polynucleobacter bacteria.
Postbiotics - also known as metabiotics, biogenics, or simply metabolites - are soluble factors, secreted by live bacteria, or released after bacterial lysis providing physiological benefits to the host.