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Plant pathology is the scientific study of diseases in plants caused by pathogens and environmental conditions. Organisms that cause infectious disease include fungi, oomycetes, bacteria, viruses, viroids, virus-like organisms, phytoplasmas, protozoa, nematodes and parasitic plants. Not included are ectoparasites like insects, mites, vertebrate, or other pests that affect plant health by eating plant tissues. Plant pathology also involves the study of pathogen identification, disease etiology, disease cycles, economic impact, plant disease epidemiology, plant disease resistance, how plant diseases affect humans and animals, pathosystem genetics, and management of plant diseases.
Fusarium/fjuˈzɛəriəm/ (help·info) is a large genus of filamentous fungi, part of a group often referred to as hyphomycetes, widely distributed in soil and associated with plants. Most species are harmless saprobes, and are relatively abundant members of the soil microbial community. Some species produce mycotoxins in cereal crops that can affect human and animal health if they enter the food chain. The main toxins produced by these Fusarium species are fumonisins and trichothecenes. Despite most species apparently being harmless, some Fusarium species and subspecific groups are among the most important fungal pathogens of plants and animals.
DNA methylation is a biological process by which methyl groups are added to the DNA molecule. Methylation can change the activity of a DNA segment without changing the sequence. When located in a gene promoter, DNA methylation typically acts to repress gene transcription. In mammals, DNA methylation is essential for normal development and is associated with a number of key processes including genomic imprinting, X-chromosome inactivation, repression of transposable elements, aging, and carcinogenesis.
Verticillium is a genus of fungi in the division Ascomycota, and are an anamorphic form of the family Plectosphaerellaceae. The genus used to include diverse groups comprising saprobes and parasites of higher plants, insects, nematodes, mollusc eggs, and other fungi, thus the genus used to have a wide-ranging group of taxa characterised by simple but ill-defined characters. The genus, currently thought to contain 51 species, may be broadly divided into three ecologically based groups - mycopathogens, entomopathogens, and plant pathogens and related saprotrophs. However, the genus has undergone recent revision into which most entomopathogenic and mycopathogenic isolates fall into a new group called Lecanicillium.
Burkholderia gladioli is a species of aerobic gram-negative rod-shaped bacteria that causes disease in both humans and plants. It can also live in symbiosis with plants and fungi and is found in soil, water, the rhizosphere, and in many animals. It was formerly known as Pseudomonas marginata.
Verticillium dahliae is a fungal plant pathogen. It causes verticillium wilt in many plant species, causing leaves to curl and discolor. It may cause death in some plants. Over 400 plant species are affected by Verticillium complex.
Chlamydia is a genus of pathogenic Gram-negative bacteria that are obligate intracellular parasites. Chlamydia infections are the most common bacterial sexually transmitted diseases in humans and are the leading cause of infectious blindness worldwide.
DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by comparison with a reference library of such DNA sections, an individual sequence can be used to uniquely identify an organism to species, just as a supermarket scanner uses the familiar black stripes of the UPC barcode to identify an item in its stock against its reference database. These "barcodes" are sometimes used in an effort to identify unknown species or parts of an organism, simply to catalog as many taxa as possible, or to compare with traditional taxonomy in an effort to determine species boundaries.
Lacticaseibacillus paracasei is a gram-positive, homofermentative species of lactic acid bacteria that are commonly used in dairy product fermentation and as probiotic cultures. Lc. paracasei is a bacterium that operates by commensalism. It is commonly found in many human habitats such as human intestinal tracts and mouths as well as sewages, silages, and previously mentioned dairy products. The name includes morphology, a rod-shaped bacterium with a width of 2.0 to 4.0μm and length of 0.8 to 1.0μm.
Viral metagenomics is the metagenomic study of viral genetic material obtained from environmental DNA samples or clinical DNA samples obtained from a host or natural reservoir. Metagenomic methods can be applied to study viruses in any system and has been used to describe various viruses associated with cancerous tumors, extreme environments, terrestrial ecosystems, and the blood and feces of humans. The term virome is also used to refer to viruses investigated by metagenomic sequencing of viral nucleic acids and is frequently used to describe environmental shotgun metagenomes. Viral metagenomics is a culture independent methodology that provides insights on viral diversity, abundance, and functional potential of viruses within the environment. Viruses lack a universal phylogenetic marker making metagenomics the only way to assess the genetic diversity of viruses in an environmental sample. With the advancements of techniques that can exploit next-generation sequencing, viruses can now be studied outside of culturable virus-host pairs. This approach has created improvements in molecular epidemiology and accelerated the discovery of novel viruses.
Heinrich Klebahn was a German mycologist and phytopathologist.
Verticillium nonalfalfae is a soilborne fungus in the order Hypocreales. It causes verticillium wilt in some plant species, particularly Ailanthus altissima. The fungus produces a resting mycelium characterized by brown-pigmented hyphae. It is most closely related to V. dahliae and V. alfalfae.
Verticillium klebahnii is a fungus often pathogenically inhabiting lettuce. It causes verticillium wilt in some plant species. It produces yellow-pigmented hyphae and microsclerotia, while producing abundant chlamydospores and resting mycelium. It is most closely related to V. tricorpus and V. isaacii.
Verticillium isaacii is a fungus inhabiting artichoke, spinach and lettuce, without necessarily being pathogenic. It causes verticillium wilt in some plant species. It produces yellow-pigmented hyphae and microsclerotia, while producing abundant chlamydospores and resting mycelium. It is most closely related to V. tricorpus and V. klebahnii.
Verticillium zaregamsianum is a fungus often found in lettuce in Japan. It can causes verticillium wilt in some plant species. It produces yellow-pigmented hyphae and microsclerotia, while producing few chlamydospores and with sparse resting mycelium. It is most closely related to V. tricorpus.
Environmental DNA or eDNA is DNA that is collected from a variety of environmental samples such as soil, seawater, snow or air, rather than directly sampled from an individual organism. As various organisms interact with the environment, DNA is expelled and accumulates in their surroundings from various sources.
Pollen DNA barcoding is the process of identifying pollen donor plant species through the amplification and sequencing of specific, conserved regions of plant DNA. Being able to accurately identify pollen has a wide range of applications though it has been difficult in the past due to the limitations of microscopic identification of pollen.
DNA barcoding in diet assessment is the use of DNA barcoding to analyse the diet of organisms. and further detect and describe their trophic interactions. This approach is based on the identification of consumed species by characterization of DNA present in dietary samples, e.g. individual food remains, regurgitates, gut and fecal samples, homogenized body of the host organism, target of the diet study.
Metabarcoding is the barcoding of DNA/RNA in a manner that allows for the simultaneous identification of many taxa within the same sample. The main difference between barcoding and metabarcoding is that metabarcoding does not focus on one specific organism, but instead aims to determine species composition within a sample.
Ralstonia pseudosolanacearum is a soil-borne bacterium. It is a vascular phytopathogen that infects host plants through the root system causing wilting disease that causes loss in a wide range of crops. R. pseudosolanacearum is Gram negative and was originally identified as Ralstonia solanacearum, however, in 2014 Safni et al. proposed a taxonomic revision of the Ralstonia solanacearum species complex to reclassify phylotype strains, including R. pseudosolanacearum.
References
- ↑ Idnurm, Alexander; Inderbitzin, Patrik; Bostock, Richard M.; Davis, R. Michael; Usami, Toshiyuki; Platt, Harold W.; Subbarao, Krishna V. (2011). "Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species". PLOS ONE. 6 (12): e28341. doi: 10.1371/journal.pone.0028341 . ISSN 1932-6203. PMC 3233568 . PMID 22174791.
