CSDA (gene)

For other uses, see CSDA.

YBX3
Identifiers
Aliases	YBX3 , CSDA, CSDA1, DBPA, ZONAB, Y-box binding protein 3
External IDs	OMIM: 603437 MGI: 2137670 HomoloGene: 2708 GeneCards: YBX3
Gene location (Human) Chr. Chromosome 12 (human) [1] Band 12p13.2 Start 10,699,089 bp [1] End 10,723,323 bp [1]
Gene location (Mouse) Chr. Chromosome 6 (mouse) [2] Band 6|6 F3 Start 131,341,818 bp [2] End 131,365,439 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in gastrocnemius muscle body of tongue vastus lateralis muscle tibialis anterior muscle deltoid muscle triceps brachii muscle thoracic diaphragm lower lobe of lung parotid gland human penis Top expressed in seminiferous tubule blood external carotid artery internal carotid artery quadriceps femoris muscle intercostal muscle digastric muscle hair follicle knee joint triceps brachii muscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription corepressor activity DNA-binding transcription factor activity mRNA 3'-UTR binding single-stranded DNA binding DNA-binding transcription repressor activity, RNA polymerase II-specific nucleic acid binding double-stranded DNA binding RNA binding DNA-binding transcription factor activity, RNA polymerase II-specific protein binding polysome binding Cellular component polysome bicellular tight junction perinuclear region of cytoplasm nucleus cytoplasm cytosol Biological process male gonad development regulation of transcription, DNA-templated negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress negative regulation of necroptotic process positive regulation of cytoplasmic translation cellular response to tumor necrosis factor positive regulation of organ growth negative regulation of apoptotic process in utero embryonic development negative regulation of transcription by RNA polymerase II transcription, DNA-templated cellular hyperosmotic response negative regulation of skeletal muscle tissue development spermatogenesis response to cold fertilization 3'-UTR-mediated mRNA stabilization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 8531 56449 Ensembl ENSG00000060138 ENSMUSG00000030189 UniProt P16989 Q9JKB3 RefSeq (mRNA) NM_001145426 NM_003651 NM_011733 NM_139117 RefSeq (protein) NP_001138898 NP_003642 NP_035863 NP_620817 Location (UCSC) Chr 12: 10.7 – 10.72 Mb Chr 6: 131.34 – 131.37 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

DNA-binding protein A is a protein that in humans is encoded by the CSDA gene. ^{[5] [6] [7]}

References

1. GRCh38: Ensembl release 89: ENSG00000060138 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000030189 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Sakura H, Maekawa T, Imamoto F, Yasuda K, Ishii S (Jun 1989). "Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology". Gene. 73 (2): 499–507. doi:10.1016/0378-1119(88)90514-8. PMID   2977358.
6. Coles LS, Diamond P, Occhiodoro F, Vadas MA, Shannon MF (Sep 1996). "Cold shock domain proteins repress transcription from the GM-CSF promoter". Nucleic Acids Res. 24 (12): 2311–7. doi:10.1093/nar/24.12.2311. PMC   145951 . PMID   8710501.
7. "Entrez Gene: CSDA cold shock domain protein A".

Further reading

• Lloberas J, Soler C, Celada A (1998). "Repression mechanisms of the I-A beta gene of the major histocompatibility complex". Immunobiology. 198 (1–3): 249–63. doi:10.1016/s0171-2985(97)80045-9. PMID   9442396.
• Kudo S, Mattei MG, Fukuda M (1995). "Characterization of the gene for dbpA, a family member of the nucleic-acid-binding proteins containing a cold-shock domain". Eur. J. Biochem. 231 (1): 72–82. doi:10.1111/j.1432-1033.1995.tb20672.x. PMID   7628487.
• Funke B, Zuleger B, Benavente R, et al. (1996). "The mouse poly(C)-binding protein exists in multiple isoforms and interacts with several RNA-binding proteins". Nucleic Acids Res. 24 (19): 3821–8. doi:10.1093/nar/24.19.3821. PMC   146158 . PMID   8871564.
• Weinmann AS, Yan PS, Oberley MJ, et al. (2002). "Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis". Genes Dev. 16 (2): 235–44. doi:10.1101/gad.943102. PMC   155318 . PMID   11799066.
• Hayashi J, Kajino K, Umeda T, et al. (2003). "Somatic mutation and SNP in the promoter of dbpA and human hepatocarcinogenesis". Int. J. Oncol. 21 (4): 847–50. doi:10.3892/ijo.21.4.847. PMID   12239625.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Coles LS, Bartley MA, Bert A, et al. (2004). "A multi-protein complex containing cold shock domain (Y-box) and polypyrimidine tract binding proteins forms on the vascular endothelial growth factor mRNA. Potential role in mRNA stabilization". Eur. J. Biochem. 271 (3): 648–60. doi: 10.1111/j.1432-1033.2003.03968.x . PMID   14728692.
• Bouwmeester T, Bauch A, Ruffner H, et al. (2004). "A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway". Nat. Cell Biol. 6 (2): 97–105. doi:10.1038/ncb1086. PMID   14743216. S2CID   11683986.
• Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Frankel P, Aronheim A, Kavanagh E, et al. (2005). "RalA interacts with ZONAB in a cell density-dependent manner and regulates its transcriptional activity". EMBO J. 24 (1): 54–62. doi:10.1038/sj.emboj.7600497. PMC   544910 . PMID   15592429.
• Tao WA, Wollscheid B, O'Brien R, et al. (2005). "Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry". Nat. Methods. 2 (8): 591–8. doi:10.1038/nmeth776. PMID   16094384. S2CID   20475874.
• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Sourisseau T, Georgiadis A, Tsapara A, et al. (2006). "Regulation of PCNA and cyclin D1 expression and epithelial morphogenesis by the ZO-1-regulated transcription factor ZONAB/DbpA". Mol. Cell. Biol. 26 (6): 2387–98. doi:10.1128/MCB.26.6.2387-2398.2006. PMC   1430269 . PMID   16508013.
• Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.

External links

• CSDA+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• Human YBX3 genome location and YBX3 gene details page in the UCSC Genome Browser .

This article incorporates text from the United States National Library of Medicine, which is in the public domain.