CFAP20DC | |||||||||||||||||||||||||||||||||||||||||||||||||||
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Identifiers | |||||||||||||||||||||||||||||||||||||||||||||||||||
Aliases | CFAP20DC , chromosome 3 open reading frame 67, C3orf67, CFAP20 domain containing | ||||||||||||||||||||||||||||||||||||||||||||||||||
External IDs | MGI: 1926154; HomoloGene: 18873; GeneCards: CFAP20DC; OMA:CFAP20DC - orthologs | ||||||||||||||||||||||||||||||||||||||||||||||||||
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Wikidata | |||||||||||||||||||||||||||||||||||||||||||||||||||
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Chromosome 3 open reading frame 67 or C3orf67 is a protein that in humans is encoded by the gene C3orf67. [5] [6] The function of C3orf67 is not yet fully understood.
C3orf67 is located at 3p14.2 on the reverse strand ranging from 58716417 to 59050045 base pairs. [7] [5] The accession number is NP_001338459.1. [8]
The coding sequence is 402-2681 base pairs of 3135 base pairs, [7] making up 759 amino acids. [5] [8] C3orf67 has six validated isoforms. [5] Isoform one is the most complete with 16 exons. [7] C3orf67 weighs 84.35 kilodaltons. [9]
There are three functional domains identified for C3orf67 [10]
Several post-translational modifications have been predicted for C3orf67 in conserved regions using various bioinformatic prediction tools [11] [12] [13] [14] [15] [16] [17] [18]
The beginning of C3orf67 is predicted to consist of a series of beta strands and a couple alpha helices that coincide with the DUF667 domain. There are also alpha helices predicted in regions that correspond to the CM_mono2 and OCRE domains. [19] [20] [21]
The DUF667 region is predicted to form a tube-like structure from a series of beta sheets. [21]
There are no known paralogs of C3orf67.
Orthologs have been identified for C3orf67 in species ranging from fungus, plants, hemichordates, parasites, fish, reptiles, birds, invertebrates, and mammals.
Species | Common Name | Date of Divergence (MYA) | Accession Number | Sequence Length (aa) | % Identity |
Orbicella faveolata | Mountainous star coral | 824 | XP_020630732.1 / XP_020630739.1 | 849 | 32.20% |
Exaiptasia pallida | Pale anemone | 824 | XP_020899564.1 | 797 | 32.00% |
Acanthaster planci | Crown-of-thorns starfish | 684 | XP_022107809.1 | 976 | 31.60% |
Stylophora pistillata | Smooth cauliflower coral | 824 | XP_022782397.1 | 825 | 30.80% |
Crassostrea gigas | Pacific oyster | 797 | XP_011453705.1 | 950 | 29.50% |
Lingula anatina | Lamp shell | 797 | XP_013404893.1 | 1077 | 29.30% |
Octopus bimaculoides | California two-spotted octopus | 797 | XP_014778712.1 | 902 | 29.10% |
Saccoglossus kowalevskii | Acorn worm | 684 | XP_006821003.1 | 596 | 23.30% |
Amphimedon queenslandica | Sponge | 951.8 | XP_011402616.1 | 508 | 22.70% |
Species | Common Name | Date of Divergence (MYA) | Accession Number | Sequence Length (aa) | % Identity |
Trichinella spiralis | Trichina worm | 797 | XP_003374081.1 | 393 | 12.60% |
Spizellomyces punctatus | Unknown | 1105 | XP_016608387.1 | 183 | 8.20% |
Selaginella moellendorffii | Spikemoss | 1496 | XP_002989784.1 | 209 | 6.00% |
The promoter is well conserved across humans, gibbons, baboons, orangutans, cats, squirrels, alpacas, rabbits and mice. [22] There are several high quality transcription factor binding sites. [23] There are also several stem-loop structures that are predicted to be formed in the promoter region, some of which overlap with transcription factor binding sites. [24]
C3orf67 is prominently expressed in the liver, tonsils, trachea, ovaries, testis, placenta, and colon. In other tissues it is expressed at low levels. [25] An increase in expression has been linked to small cell lung cancer. [26]
The protein has been identified as one of seventeen (17) genes that may play a novel role in the intersection of tumor promotion and DNA-damaging stress and may be linked to carcinogenesis. [27]
There are three notable transcription factors that are known to be involved in the regulation of cell growth or immune responses:
Several other proteins have been predicted to interact with C3orf67: