Calcium signaling in Arabidopsis

Last updated
Arabidopsis thaliana Arabidopsis thaliana kz08.jpg
Arabidopsis thaliana

Calcium signaling in Arabidopsis is a calcium mediated signalling pathway that Arabidopsis plants use in order to respond to a stimuli. In this pathway, Ca2+ works as a long range communication ion, allowing for rapid communication throughout the plant. Systemic changes in metabolites such as glucose and sucrose takes a few minutes after the stimulus, but gene transcription occurs within seconds. [1] Because hormones, peptides and RNA travel through the vascular system at lower speeds than the plants response to wounds, indicates that Ca2+ must be involved in the rapid signal propagation. [1] Instead of local communication to nearby cells and tissues, Ca2+ uses mass flow within the vascular system to help with rapid transport throughout the plant. Ca2+ moving through the xylem and phloem acts through a “calcium signature” receptor system in cells where they integrate the signal and respond with the activation of defense genes. [2] These calcium signatures encode information about the stimulus allowing the response of the plant to cater towards the type of stimulus.

Contents

Calcium wound/damage response

Different kinds of stimuli result in different responses within the Arabidopsis plant. A wound or damage to the plant causes a wound-activated surface potential (WASP) changes that serve as an alert message to undamaged tissues. This wound response results in a plasma membrane depolarization, H+ and Ca2+ efflux and K+ influx, causing an action potential. This action potential causes Ca2+ cytosolic concentration to increase, therefore sending calcium into the phloem, where the signaling is spread, and as it arrives to systemic tissues. Because of the various stimuli perceived by the plant, abiotic and biotic stress results in different amplitudes, durations, frequencies and localizations of Ca2+ concentrations. These “calcium signatures” encode information about the nature of the stimulus and different signatures are sensed by different sensor proteins. [2] With herbivory being an abiotic stressor, Ca2+ is sensed by the regulatory ubiquitin protein calmodulin, which phosphorylates JAV1. In turn, it ubiquitinates JAV1 so it no longer inhibits the biosynthesis of JA, giving a rapid increase of the JA hormone. This increase signals the defense system to begin transcribing JA inducible defense genes against herbivory. [3] Alert messages are generated and propagated throughout the plant to undamaged tissues through WASPs, Ca2+, and hormonal signals, such as JA. [2]

Calcium cold response

When an Arabidopsis plant is subjected to cold temperatures, it induces cold response genes. In order for cold genes to be expressed, COLD1 receptors that are present on the plants surface sense the cold temperature and activate Ca2+ channels, these channels include: MCA1, MCA2 and other undetermined channels. The activation of Ca2+ channels allows for Ca2+ to move into the cell and increase cellular Ca2+ concentration. [4] The concentration and duration of Ca2+ within the cell is determined by the plants acclimation to the temperature, as well as the intensity and length of cold duration. [5] During increased Ca2+ concentrations, Ca2+ is used as a second messenger to increase the concentration of Ca2+ dependent protein kinase (CPKs). During times of increased Ca2+ concentrations, Ca2+ also binds to calmodulin on the CRLK and AtSR1/CAMTA3. Activation of the CRLK causes an MAPK cascade that activates the MAPK pathway, signaling for the suppression of ICE1 degradation: ICE1 encodes a transcription factor that promotes production of CBF/DREB genes. [5] AtSR1 also binds to the promoter region of CBF and promotes CBF gene expression. [4] CBF and DREB transcription proteins are then synthesized and bind to the promoter of cold induced genes DRE and CRT. [6] Binding to the promoter region of the cold induced genes increases the rate of transcription of cold genes, allowing the Arabidopsis plant to become more acclimated to the cold. This Ca2+ signaling cascade, and transcription of cold genes in response to cold temperatures, allows for the plants survival.

Related Research Articles

<span class="mw-page-title-main">Calmodulin</span> Messenger protein

Calmodulin (CaM) (an abbreviation for calcium-modulated protein) is a multifunctional intermediate calcium-binding messenger protein expressed in all eukaryotic cells. It is an intracellular target of the secondary messenger Ca2+, and the binding of Ca2+ is required for the activation of calmodulin. Once bound to Ca2+, calmodulin acts as part of a calcium signal transduction pathway by modifying its interactions with various target proteins such as kinases or phosphatases.

<span class="mw-page-title-main">Vasoconstriction</span> Narrowing of blood vessels due to the constriction of smooth muscle cells

Vasoconstriction is the narrowing of the blood vessels resulting from contraction of the muscular wall of the vessels, in particular the large arteries and small arterioles. The process is the opposite of vasodilation, the widening of blood vessels. The process is particularly important in controlling hemorrhage and reducing acute blood loss. When blood vessels constrict, the flow of blood is restricted or decreased, thus retaining body heat or increasing vascular resistance. This makes the skin turn paler because less blood reaches the surface, reducing the radiation of heat. On a larger level, vasoconstriction is one mechanism by which the body regulates and maintains mean arterial pressure.

<span class="mw-page-title-main">Auxin</span> Plant hormone

Auxins are a class of plant hormones with some morphogen-like characteristics. Auxins play a cardinal role in coordination of many growth and behavioral processes in plant life cycles and are essential for plant body development. The Dutch biologist Frits Warmolt Went first described auxins and their role in plant growth in the 1920s. Kenneth V. Thimann became the first to isolate one of these phytohormones and to determine its chemical structure as indole-3-acetic acid (IAA). Went and Thimann co-authored a book on plant hormones, Phytohormones, in 1937.

<span class="mw-page-title-main">CREB</span> Class of proteins

CREB-TF is a cellular transcription factor. It binds to certain DNA sequences called cAMP response elements (CRE), thereby increasing or decreasing the transcription of the genes. CREB was first described in 1987 as a cAMP-responsive transcription factor regulating the somatostatin gene.

<span class="mw-page-title-main">Nitric oxide synthase</span> Enzyme catalysing the formation of the gasotransmitter NO(nitric oxide)

Nitric oxide synthases (NOSs) are a family of enzymes catalyzing the production of nitric oxide (NO) from L-arginine. NO is an important cellular signaling molecule. It helps modulate vascular tone, insulin secretion, airway tone, and peristalsis, and is involved in angiogenesis and neural development. It may function as a retrograde neurotransmitter. Nitric oxide is mediated in mammals by the calcium-calmodulin controlled isoenzymes eNOS and nNOS. The inducible isoform, iNOS, involved in immune response, binds calmodulin at physiologically relevant concentrations, and produces NO as an immune defense mechanism, as NO is a free radical with an unpaired electron. It is the proximate cause of septic shock and may function in autoimmune disease.

Cold hardening is the physiological and biochemical process by which an organism prepares for cold weather.

<span class="mw-page-title-main">Calcium signaling</span> Intracellular communication process

Calcium signaling is the use of calcium ions (Ca2+) to communicate and drive intracellular processes often as a step in signal transduction. Ca2+ is important for cellular signalling, for once it enters the cytosol of the cytoplasm it exerts allosteric regulatory effects on many enzymes and proteins. Ca2+ can act in signal transduction resulting from activation of ion channels or as a second messenger caused by indirect signal transduction pathways such as G protein-coupled receptors.

Florigens are proteins capable of inducing flowering time in angiosperms. The prototypical florigen is encoded by the FT gene and its orthologs in Arabidopsis and other plants. Florigens are produced in the leaves, and act in the shoot apical meristem of buds and growing tips.

<span class="mw-page-title-main">TRPV6</span> Protein-coding gene in the species Homo sapiens

TRPV6 is a membrane calcium (Ca2+) channel protein which is particularly involved in the first step in Ca2+absorption in the intestine.

Calcium-binding proteins are proteins that participate in calcium cell signaling pathways by binding to Ca2+, the calcium ion that plays an important role in many cellular processes. Calcium-binding proteins have specific domains that bind to calcium and are known to be heterogeneous.

Ca<sup>2+</sup>/calmodulin-dependent protein kinase II Class of enzymes

Ca2+
/calmodulin-dependent protein kinase II
is a serine/threonine-specific protein kinase that is regulated by the Ca2+
/calmodulin complex. CaMKII is involved in many signaling cascades and is thought to be an important mediator of learning and memory. CaMKII is also necessary for Ca2+
homeostasis and reuptake in cardiomyocytes, chloride transport in epithelia, positive T-cell selection, and CD8 T-cell activation.

Phosphodiesterase 1, PDE1, EC 3.1.4.1, systematic name oligonucleotide 5-nucleotidohydrolase) is a phosphodiesterase enzyme also known as calcium- and calmodulin-dependent phosphodiesterase. It is one of the 11 families of phosphodiesterase (PDE1-PDE11). Phosphodiesterase 1 has three subtypes, PDE1A, PDE1B and PDE1C which divide further into various isoforms. The various isoforms exhibit different affinities for cAMP and cGMP.

<span class="mw-page-title-main">Wall-associated kinase</span>

Wall-associated kinases (WAKs) are one of many classes of plant proteins known to serve as a medium between the extracellular matrix (ECM) and cytoplasm of cell walls. They are serine-threonine kinases that contain epidermal growth factor (EGF) repeats, a cytoplasmic kinase and are located in the cell walls. They provide a linkage between the inner and outer surroundings of cell walls. WAKs are under a group of receptor-like kinases (RLK) that are actively involved in sensory and signal transduction pathways especially in response to foreign attacks by pathogens and in cell development. On the other hand, pectins are an abundant group of complex carbohydrates present in the primary cell wall that play roles in cell growth and development, protection, plant structure and water holding capacity.

<span class="mw-page-title-main">CAMK4</span> Protein-coding gene in the species Homo sapiens

Calcium/calmodulin-dependent protein kinase type IV is an enzyme that in humans is encoded by the CAMK4 gene.

<span class="mw-page-title-main">CAMK1</span> Protein-coding gene in the species Homo sapiens

Calcium/calmodulin-dependent protein kinase type 1 is an enzyme that in humans is encoded by the CAMK1 gene.

<span class="mw-page-title-main">Calcium-binding protein 1</span> Protein found in humans

Calcium binding protein 1 is a protein that in humans is encoded by the CABP1 gene. Calcium-binding protein 1 is a calcium-binding protein discovered in 1999. It has two EF hand motifs and is expressed in neuronal cells in such areas as hippocampus, habenular nucleus of the epithalamus, Purkinje cell layer of the cerebellum, and the amacrine cells and cone bipolar cells of the retina.

Biotic stress is stress that occurs as a result of damage done to an organism by other living organisms, such as bacteria, viruses, fungi, parasites, beneficial and harmful insects, weeds, and cultivated or native plants. It is different from abiotic stress, which is the negative impact of non-living factors on the organisms such as temperature, sunlight, wind, salinity, flooding and drought. The types of biotic stresses imposed on an organism depend the climate where it lives as well as the species' ability to resist particular stresses. Biotic stress remains a broadly defined term and those who study it face many challenges, such as the greater difficulty in controlling biotic stresses in an experimental context compared to abiotic stress.

In plant biology, plant memory describes the ability of a plant to retain information from experienced stimuli and respond at a later time. For example, some plants have been observed to raise their leaves synchronously with the rising of the sun. Other plants produce new leaves in the spring after overwintering. Many experiments have been conducted into a plant's capacity for memory, including sensory, short-term, and long-term. The most basic learning and memory functions in animals have been observed in some plant species, and it has been proposed that the development of these basic memory mechanisms may have developed in an early organismal ancestor.

Hydraulic signals in plants are detected as changes in the organism's water potential that are caused by environmental stress like drought or wounding. The cohesion and tension properties of water allow for these water potential changes to be transmitted throughout the plant.

Phonotropism is the growth of organisms in response to sound stimuli. Root phonotropism is when the roots of a plant grow towards or away in response to a sound source. Acoustic cues are detected by the plant as sound waves which then induces a mechanistic response that changes plant behavior. Plants adapt to respond to external stimuli because of their sessile nature, and it is evolutionarily plausible that these organisms have adapted to take advantage of these inputs to help foraging behavior or defense mechanisms. Arabidopsis roots have been observed to gravitate towards sounds of flowing water, while caterpillar feeding vibrations alone are sufficient to alter plant defense hormones and volatile emissions in Arabidopsis leaves.

References

  1. 1 2 Johns S, Hagihara T, Toyota M, Gilroy S (April 2021). "The fast and the furious: rapid long-range signaling in plants". Plant Physiology. 185 (3): 694–706. doi:10.1093/plphys/kiaa098. PMC   8133610 . PMID   33793939.
  2. 1 2 3 Savatin DV, Gramegna G, Modesti V, Cervone F (2014). "Wounding in the plant tissue: the defense of a dangerous passage". Frontiers in Plant Science. 5: 470. doi: 10.3389/fpls.2014.00470 . PMC   4165286 . PMID   25278948.
  3. Yan C, Fan M, Yang M, Zhao J, Zhang W, Su Y, et al. (April 2018). "Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis". Molecular Cell. 70 (1): 136–149.e7. doi: 10.1016/j.molcel.2018.03.013 . PMID   29625034.
  4. 1 2 Yuan P, Yang T, Poovaiah BW (December 2018). "Calcium Signaling-Mediated Plant Response to Cold Stress". International Journal of Molecular Sciences. 19 (12): 3896. doi: 10.3390/ijms19123896 . PMC   6320992 . PMID   30563125.
  5. 1 2 Zarka DG, Vogel JT, Cook D, Thomashow MF (October 2003). "Cold induction of Arabidopsis CBF genes involves multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature". Plant Physiology. 133 (2): 910–918. doi:10.1104/pp.103.027169. PMC   219064 . PMID   14500791.
  6. Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong X, Agarwal M, Zhu JK (April 2003). "ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis". Genes & Development. 17 (8): 1043–1054. doi:10.1101/gad.1077503. PMC   196034 . PMID   12672693.