Caldalkalibacillus

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Caldalkalibacillus
Scientific classification
Domain:
Bacteria
Phylum:
Bacillota
Class:
Bacilli
Order:
Bacillales
Family:
Bacillaceae
Genus:
Caldalkalibacillus

Xue et al. 2006 [1]
Species

C. thermarum [1]
C. uzonensis [1]

C. mannanilyticus

Synonyms

Thermalkalibacillus [2]

Caldalkalibacillus is an aerobic and spore-forming genus of bacteria from the family of Bacillaceae the stains either Gram-positive or Gram-variable. [1] [2] [3] [4] [5] [6] The type species of this genus is Caldalkalibacillus thermarum. [7]

Caldalkalibacillusmannanilyticus was previously a species belonging to Bacillus , a genus that has been recognized as displaying extensive polyphyly and has been restricted by recent phylogenetic studies to only include species closely related to Bacillus subtilis and Bacillus cereus. [8] [9]

The name Caldalkalibacillus is derived from the prefix "-caldalkali" (from the Latin adjective caldus, which translates to "hot" and the Latin noun alkali), and the suffix "-bacillus" (from the Latin noun bacillus, referring to a small rod). [1] Together, Caldalkalibacillus translates to bacillus living under hot and alkaline conditions).

Biochemical Characteristics and Molecular Signatures

Members of this genus are aerobic and some are motile and endospore-forming. Colonies formed are either yellow or yellowish-white in colour. Temperature range for growth is 20–65°C, with optimum growth temperature for C. mannanilyticus around 37°C, whereas C. thermarum grows optimally at 60°C. The pH range for growth is 7.5–10, with optimal growth occurring around pH 8.5–9.0. [9]

Four conserved signature indels (CSIs) were identified through genomic analyses for this genus in the following proteins: prephenate dehydrogenase, isoprenyl transferase, DUF1027 domain-containing protein and adenine deaminase, which in most cases are exclusively shared by either all or most members of this genus. [9] [3] These CSIs provide a reliable molecular means of distinguishing Caldalkalibacillus species from other Bacillaceae genera and bacteria.

Taxonomy

Caldalkalibacillus, as of May 2021, contains a total of 3 species with validly published names. [7] This branching pattern is also observed in the Genome Taxonomy Database (GTDB). [10]

Related Research Articles

Caldibacillus is a facultative anaerobe genus of bacteria that stains Gram-positive from the family of Bacillaceae. The type species of this genus is Caldibacillus debilis.

Salibacterium is a genus of Gram-positive bacteria from the family of Bacillaceae. The type species is Salibacterium halotolerans.

Salisediminibacterium is a genus of Gram-positive bacteria from the family of Bacillaceae. The type species is Salisediminibacterium halotolerans.

Alkalihalobacillus is a genus of gram-positive or gram-variable rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Alkalihalobacillus alcalophilus.

Metabacillus is a genus of rod-shaped bacteria exhibiting Gram-positive or Gram-variable staining in the family Bacillaceae within the order Bacillales. The type species for this genus is Metabacillus fastidiosus.

Neobacillus is a genus of rod-shaped bacteria that show Gram-positive or Gram-variable staining. This genus belongs under the family Bacillaceae within the order Bacillales. The type species of Neobacillus is Neobacillus niacini.

<span class="mw-page-title-main">Cytobacillus</span> Genus of rod-shaped bacteria

Cytobacillus is a genus of rod-shaped bacteria that stain either Gram-positive or Gram-variable in the family Bacillaceae within the order Bacillales. The type species for this genus is Cytobacillus firmus.

Peribacillus is a genus of rod-shaped bacteria that exhibits Gram-positive or Gram-variable staining that belongs in the family Bacillaceae within the order Bacillales. The type species for this genus is Peribacillus simplex.

Mesobacillus is a genus of gram-positive or gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Mesobacillus jeotgali.

Alteribacter is a genus of Gram-positive or Gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Alteribacter auranticus.

Ectobacillus is a genus of Gram-positive, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Ectobacillus panaciterrae.

Evansella is a genus of Gram-positive rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Evansella cellulosilytica.

Ferdinandcohnia is a genus of rod-shaped bacteria that generally display Gram-positive staining in the family Bacillaceae within the order Bacillales. The type species for this genus is Ferdinandcohnia humi.

Gottfriedia is a genus of gram-positive or Gram-variable rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Gottfriedia luciferensis.

<i>Lederbergia</i> Genus of bacteria

Lederbergia is a genus of gram-positive or Gram-variable, rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Lederbergia galactosidilyticus.

Litchfieldia is a genus of Gram-positive rod-shaped bacteria in the family Bacillaceae within the order Bacillales. The type species for this genus is Litchfieldia alkalitelluris.

Niallia is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Niallia circulans.

Robertmurraya is a genus of mostly Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Robertmurraya siralis.

Schinkia is a genus of Gram-positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Schinkia azotoformans.

Sutcliffiella is a genus of Gram-Positive rod-shaped bacteria in the family Bacillaceae from the order Bacillales. The type species of this genus is Sutcliffiella cohnii.

References

  1. 1 2 3 4 5 Parte, A.C. "Caldalkalibacillus". LPSN .
  2. 1 2 "Caldalkalibacillus". www.uniprot.org.
  3. 1 2 Parker, Charles Thomas; Osier, Nicole Danielle; Garrity, George M. "Nomenclature Abstract for Caldalkalibacillus Xue et al. 2006 emend. Zhao et al. 2008". The NamesforLife Abstracts. doi:10.1601/nm.10093 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
  4. ↑ Schagerl, Michael (2016). Soda Lakes of East Africa. Springer. ISBN   9783319286228.
  5. ↑ Falkiewicz-Dulik, Michalina; Janda, Katarzyna; Wypych, George (2015). Handbook of Material Biodegradation, Biodeterioration, and Biostablization. Elsevier. ISBN   9781927885024.
  6. ↑ Vos, Paul; Garrity, George; Jones, Dorothy; Krieg, Noel R.; Ludwig, Wolfgang; Rainey, Fred A.; Schleifer, Karl-Heinz; Whitman, William B. (2011). Bergey's Manual of Systematic Bacteriology: Volume 3: The Firmicutes. Springer Science & Business Media. ISBN   9780387684895.
  7. 1 2 "Genus: Caldalkalibacillus". lpsn.dsmz.de. Retrieved 2021-05-30.
  8. ↑ Patel, Sudip; Gupta, Radhey S. (2020-01-01). "A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov". International Journal of Systematic and Evolutionary Microbiology. 70 (1): 406–438. doi: 10.1099/ijsem.0.003775 . ISSN   1466-5026.
  9. 1 2 3 Gupta, Radhey S.; Patel, Sudip; Saini, Navneet; Chen, Shu (2020-11-01). "Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5753–5798. doi: 10.1099/ijsem.0.004475 . ISSN   1466-5026.
  10. ↑ "GTDB - Tree". gtdb.ecogenomic.org. Retrieved 2021-05-28.


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