Krogh's principle states that "for such a large number of problems there will be some animal of choice, or a few such animals, on which it can be most conveniently studied." This concept is central to those disciplines of biology that rely on the comparative method, such as neuroethology, comparative physiology, and more recently functional genomics.
Krogh's principle is named after the Danish physiologist August Krogh, winner of the Nobel Prize in Physiology for his contributions to understanding the anatomy and physiology of the capillary system, who described it in The American Journal of Physiology in 1929. However, the principle was first elucidated nearly 60 years prior to this, and in almost the same words as Krogh, in 1865 by Claude Bernard, the French instigator of experimental medicine, on page 27 of his "Introduction à l'étude de la médecine expérimentale":
Dans l'investigation scientifique, les moindres procédés sont de la plus haute importance. Le choix heureux d'un animal, d'un instrument construit d'une certaine façon, l'emploi d'un réactif au lieu d'un autre, suffisent souvent pour résoudre les questions générales les plus élevées. ("In scientific research, the tiniest processes are of the greatest importance. The lucky choice of animal, of an instrument built in a particular way, the use of one reagent instead of another, often suffice to solve general questions of the highest order.")
—Claude Bernard, Introduction à l'étude de la médecine expérimentale, J.B. Baillière et Fils, Libraires de L'Académie Impériale de Médecine, 1865. pp. 400
Krogh wrote the following in his 1929 treatise on the then current 'status' of physiology (emphasis added):
...I want to emphasize that the route by which we can strive toward the ideal is by a study of the vital functions in all their aspects throughout the myriads of organisms. We may find out, nay, we will find out before very long the essential mechanisms of mammaliankidney function, but the general problem of excretion can be solved only when excretory organs are studied wherever we find them and in all their essential modifications. Such studies will be sure, moreover, to expand and deepen our insight into problems of the humankidney and will prove of value also from the narrowest utilitarian point of view. For such a large number of problems there will be some animal of choice or a few such animals on which it can be most conveniently studied. Many years ago when my teacher, Christian Bohr, was interested in the respiratory mechanism of the lung and devised the method of studying the exchange through each lung separately, he found that a certain kind of tortoise possessed a trachea dividing into the main bronchi high up in the neck, and we used to say as a laboratory joke that this animal had been created expressly for the purposes of respiration physiology. I have no doubt that there is quite a number of animals which are similarly "created" for special physiological purposes, but I am afraid that most of them are unknown to the men for whom they were "created," and we must apply to the zoologists to find them and lay our hands on them."
—August Krogh, The Progress of Physiology, The American Journal of Physiology, 1929. 90(2) pp. 243-251
"Krogh's principle" was not utilized as a formal term until 1975 when the biochemist Hans Adolf Krebs (who initially described the Citric Acid Cycle), first referred to it.
More recently, at the International Society for Neuroethology meeting in Nyborg, Denmark in 2004, Krogh's principle was cited as a central principle by the group at their 7th Congress. Krogh's principle has also been receiving attention in the area of functional genomics, where there has been increasing pressure and desire to expand genomics research to a more wide variety of organisms beyond the traditional scope of the field.
Philosophy and applications
A central concept to Krogh's principle is evolutionary adaptation. Evolutionary theory maintains that organisms are suited to particular niches, some of which are highly specialized for solving particular biological problems. These adaptations are typically exploited by biologists in several ways:
Thermus aquaticus
Methodology: (e.g. Taq polymerase and PCR): The need to manipulate biological systems in the laboratory has driven the use of an organismal specialization. One example of Krogh's principle presents itself in the heavily used Polymerase Chain Reaction (PCR), a method which relies on the rapid exposure of DNA to high heat for amplification of particular sequences of interest. DNA polymeraseenzyme from many organisms would denature at high temperatures, however, to solve this problem, Chien and colleagues turned to Thermus aquaticus, a strain of bacteria native to hydrothermal vents. Thermus aquaticus has a polymerase that is heat stable at temperatures necessary for PCR. Biochemically modified Taq polymerase, as it is usually called, is now routinely used in PCR applications.
Overcoming technical limitations: (e.g. large neurons in Mollusca): Two Nobel Prize–winning bodies of study were facilitated by using ideas central to Krogh's principle to overcome technical limitations in nervous system physiology. The ionic basis of the action potential was elucidated in the squid giant axon in 1958 by Hodgkin and Huxley, developers of the original voltage clamp device and co-recipients of the 1963 Nobel Prize in Physiology or Medicine. The voltage clamp is now a central piece of technology in modern neurophysiology, but was only possible to develop using the wide diameter of the squid giant axon. Another marine mollusc, the opisthobranchAplysia possesses relatively small number of large nerve cells that are easily identified and mapped from individual to individual. Aplysia was selected for these reasons for the study of the cellular and molecular basis of learning and memory which led to Eric Kandel's receipt of the Nobel Prize in 2000.
Tyto alba, the Barn Owl
Understanding more complex/subtle systems (e.g. Barn owls and sound localization): Beyond overcoming technical limitations, Krogh's principle has particularly important implications in the light of convergent evolution and homology. Either because of evolutionary history, or particular constraints on a given niche, there are not infinite solutions to all biological problems. Instead, organisms utilize similar neural algorithms, behaviors, or even structures to accomplish similar tasks. If one's goal is to understand how the nervous system might localize objects using sound, one may take the approach of using an auditory 'specialist' such as the barn owl studied by Mark Konishi, Eric Knudsen and their colleagues. A nocturnalpredator by nature, the barn owl relies heavily on using precise information on the time of arrival of sound in its ears. The information gleaned from this approach has contributed heavily to our understanding of how the brain maps sensory space, and how nervous systems encode timing information.
Bennett AF (2003). Experimental evolution and the Krogh Principle: generating biological novelty for functional and genetic analyses. Physiological and Biochemical Zoology 76:1-11. PDFArchived 2008-08-29 at the Wayback Machine
Burggren WW (1999/2000). Developmental physiology, animal models, and the August Krogh principle. Zoology 102:148-156.
Chien A, Edgar DB, Trela JM (1976). "Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus". J. Bacteriol. 174: 1550-1557
Crawford, DL (2001). "Functional genomics does not have to be limited to a few select organisms". Genome Biology 2(1):interactions1001.1-1001.2.
Krebs HA (1975). The August Krogh principle: "For many problems there is an animal on which it can be most conveniently studied." Journal of Experimental Zoology 194:221-226.
Krogh A (1929). The progress of physiology. American Journal of Physiology 90:243-251.
"Krogh's principle for a new era." (2003) [Editorial] Nature Genetics 34(4) pp.345–346.
Miller G. (2004) Behavioral Neuroscience Uncaged. Science 306(5695):432-434.
Biology – The natural science that studies life. Areas of focus include structure, function, growth, origin, evolution, distribution, and taxonomy.
Kary Banks Mullis was an American biochemist. In recognition of his role in the invention of the polymerase chain reaction (PCR) technique, he shared the 1993 Nobel Prize in Chemistry with Michael Smith and was awarded the Japan Prize in the same year. PCR became a central technique in biochemistry and molecular biology, described by The New York Times as "highly original and significant, virtually dividing biology into the two epochs of before PCR and after PCR." Mullis attracted controversy for downplaying humans' role in climate change and for expressing doubts that HIV is the sole cause of AIDS.
Physiology is the scientific study of functions and mechanisms in a living system. As a sub-discipline of biology, physiology focuses on how organisms, organ systems, individual organs, cells, and biomolecules carry out the chemical and physical functions in a living system. According to the classes of organisms, the field can be divided into medical physiology, animal physiology, plant physiology, cell physiology, and comparative physiology.
The polymerase chain reaction (PCR) is a method widely used to rapidly make millions to billions of copies of a specific DNA sample, allowing scientists to take a very small sample of DNA and amplify it to a large enough amount to study in detail. PCR was invented in 1983 by American biochemist Kary Mullis at Cetus Corporation; Mullis and biochemist Michael Smith, who had developed other essential ways of manipulating DNA, were jointly awarded the Nobel Prize in Chemistry in 1993.
Schack August Steenberg Krogh was a Danish professor at the department of zoophysiology at the University of Copenhagen from 1916 to 1945. He contributed a number of fundamental discoveries within several fields of physiology, and is famous for developing the Krogh Principle.
Deinococcota is a phylum of bacteria with a single class, Deinococci, that are highly resistant to environmental hazards, also known as extremophiles. These bacteria have thick cell walls that give them gram-positive stains, but they include a second membrane and so are closer in structure to those of gram-negative bacteria.
DNA polymerase I is an enzyme that participates in the process of prokaryotic DNA replication. Discovered by Arthur Kornberg in 1956, it was the first known DNA polymerase. It was initially characterized in E. coli and is ubiquitous in prokaryotes. In E. coli and many other bacteria, the gene that encodes Pol I is known as polA. The E. coli Pol I enzyme is composed of 928 amino acids, and is an example of a processive enzyme — it can sequentially catalyze multiple polymerisation steps without releasing the single-stranded template. The physiological function of Pol I is mainly to support repair of damaged DNA, but it also contributes to connecting Okazaki fragments by deleting RNA primers and replacing the ribonucleotides with DNA.
Thermus aquaticus is a species of bacteria that can tolerate high temperatures, one of several thermophilic bacteria that belong to the Deinococcota phylum. It is the source of the heat-resistant enzyme Taq DNA polymerase, one of the most important enzymes in molecular biology because of its use in the polymerase chain reaction (PCR) DNA amplification technique.
Neuroethology is the evolutionary and comparative approach to the study of animal behavior and its underlying mechanistic control by the nervous system. It is an interdisciplinary science that combines both neuroscience and ethology. A central theme of neuroethology, which differentiates it from other branches of neuroscience, is its focus on behaviors that have been favored by natural selection rather than on behaviors that are specific to a particular disease state or laboratory experiment.
Taq polymerase is a thermostable DNA polymerase I named after the thermophilic eubacterial microorganism Thermus aquaticus, from which it was originally isolated by Chien et al. in 1976. Its name is often abbreviated to Taq or Taq pol. It is frequently used in the polymerase chain reaction (PCR), a method for greatly amplifying the quantity of short segments of DNA.
Thermus thermophilus is a Gram-negative bacterium used in a range of biotechnological applications, including as a model organism for genetic manipulation, structural genomics, and systems biology. The bacterium is extremely thermophilic, with an optimal growth temperature of about 65 °C (149 °F). Thermus thermophilus was originally isolated from a thermal vent within a hot spring in Izu, Japan by Tairo Oshima and Kazutomo Imahori. The organism has also been found to be important in the degradation of organic materials in the thermogenic phase of composting. T. thermophilus is classified into several strains, of which HB8 and HB27 are the most commonly used in laboratory environments. Genome analyses of these strains were independently completed in 2004.
In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
TaqMan probes are hydrolysis probes that are designed to increase the specificity of quantitative PCR. The method was first reported in 1991 by researcher Kary Mullis at Cetus Corporation, and the technology was subsequently developed by Hoffmann-La Roche for diagnostic assays and by Applied Biosystems for research applications.
Comparative physiology is a subdiscipline of physiology that studies and exploits the diversity of functional characteristics of various kinds of organisms. It is closely related to evolutionary physiology and environmental physiology. Many universities offer undergraduate courses that cover comparative aspects of animal physiology. According to Clifford Ladd Prosser, "Comparative Physiology is not so much a defined discipline as a viewpoint, a philosophy."
Functional cloning is a molecular cloning technique that relies on prior knowledge of the encoded protein’s sequence or function for gene identification. In this assay, a genomic or cDNA library is screened to identify the genetic sequence of a protein of interest. Expression cDNA libraries may be screened with antibodies specific for the protein of interest or may rely on selection via the protein function. Historically, the amino acid sequence of a protein was used to prepare degenerate oligonucleotides which were then probed against the library to identify the gene encoding the protein of interest. Once candidate clones carrying the gene of interest are identified, they are sequenced and their identity is confirmed. This method of cloning allows researchers to screen entire genomes without prior knowledge of the location of the gene or the genetic sequence.
The history of the polymerase chain reaction (PCR) has variously been described as a classic "Eureka!" moment, or as an example of cooperative teamwork between disparate researchers. Following is a list of events before, during, and after its development:
The versatility of polymerase chain reaction (PCR) has led to modifications of the basic protocol being used in a large number of variant techniques designed for various purposes. This article summarizes many of the most common variations currently or formerly used in molecular biology laboratories; familiarity with the fundamental premise by which PCR works and corresponding terms and concepts is necessary for understanding these variant techniques.
Thomas Dale Brock was an American microbiologist known for his discovery of hyperthermophiles living in hot springs at Yellowstone National Park. In the late 1960s, Brock discovered high-temperature bacteria living in the Great Fountain region of Yellowstone, and with his colleague Hudson Freeze, they isolated a sample which they named Thermus aquaticus. "Life at High Temperatures", a 1967 article summarizing his research, was published in the journal Science and led to the study of extremophiles, organisms that live in extreme environments. By 1976, T. aquaticus was found useful for artificially amplifying DNA segments. Brock's discoveries led to great progress in biology, contributed to new developments in medicine and agriculture, and helped create the new field of biotechnology.
Multiple displacement amplification (MDA) is a DNA amplification technique. This method can rapidly amplify minute amounts of DNA samples to a reasonable quantity for genomic analysis. The reaction starts by annealing random hexamer primers to the template: DNA synthesis is carried out by a high fidelity enzyme, preferentially Φ29 DNA polymerase. Compared with conventional PCR amplification techniques, MDA does not employ sequence-specific primers but amplifies all DNA, generates larger-sized products with a lower error frequency, and works at a constant temperature. MDA has been actively used in whole genome amplification (WGA) and is a promising method for application to single cell genome sequencing and sequencing-based genetic studies.
Extremophiles in biotechnology is the application of organisms that thrive in extreme environments to biotechnology.
This page is based on this Wikipedia article Text is available under the CC BY-SA 4.0 license; additional terms may apply. Images, videos and audio are available under their respective licenses.
