List of restriction enzyme cutting sites: Ba–Bc

Main articles: List of restriction enzyme cutting sites and Restriction enzyme

Legend of nucleobases
Code	Nucleotide represented
A	Adenine (A)
C	Cytosine (C)
G	Guanine (G)
T	Thymine (T)
N	A, C, G or T
M	A or C
R	A or G
W	A or T
Y	C or T
S	C or G
K	G or T
H	A, C or T
B	C, G or T
V	A, C or G
D	A, G or T

This article contains a list of the most studied restriction enzymes whose names start with Ba to Bc inclusive. It contains approximately 120 enzymes.

The following information is given:

• Enzyme: Accepted name of the molecule, according to the internationally adopted nomenclature ^{[1] [2]} , and bibliographical references. (Further reading: see the section "Nomenclature" in the article "Restriction enzyme".)
• PDB code: Code used to identify the structure of a protein in the PDB database of protein structures. The 3D atomic structure of a protein provides highly valuable information to understand the intimate details of its mechanism of action ^{[3] [4]} .
• Source: Organism that naturally produces the enzyme.
• Recognition sequence : Sequence of DNA recognized by the enzyme and to which it specifically binds.
• Cut: Cutting site and DNA products of the cut. The recognition sequence and the cutting site usually match, but sometimes the cutting site can be dozens of nucleotides away from the recognition site ^{[5] [6]} .
• Isoschizomers and neoschizomers: An isoschizomer is an enzyme that recognizes the same sequence as another. A neoschizomer is a special type of isoschizomer that recognizes the same sequence as another, but cuts in a different manner. A maximum number of 8-10 most common isoschizomers are indicated for every enzyme but there may be many more. Neoschizomers are shown in bold and green color font (e.g.: BamHI). When "None on date" is indicated, that means that there were no registered isoschizomers in the databases on that date with a clearly defined cutting site. Isoschizomers indicated in white font and grey background correspond to enzymes not listed in the current lists:

as in this not listed enzyme:

EcoR70I

Whole list navigation

• Main page
• A
• Ba-Bc
• Bd-Bp
• Bsa-Bso
• Bsp
• Bsr-Bss
• Bst
• Bsu-Bv –
• C
• D
• E
• F
• G
• H
• I
• K
• L
• M
• N
• O
• P
• R
• S
• T
• U
• V
• X
• Y
• Z
• – External links
• See also

Restriction enzymes

Ba - Bc

Enzyme	PDB code	Source	Recognition sequence	Cut	Isoschizomers
Bac36I		Bacillus alcalophilus 36	5' GGNCC 3' CCNGG	5' ---G   GNCC--- 3' 3' ---CCNG   G--- 5'	AspS9I, AvcI, BavAII, Bce22I, Bsp1894I, Bsu54I, FmuI, NspIV
BaeI [7]		Bacillus sphaericus	5' ACN4GTAYC 3' TGN4CATYG	5' ---ACN4GTAYCN6NNNNNN   --- 3' 3' ---TGN4CATYGN6N   NNNNN--- 5'	— None in May 2010 —
BalI [8] [9]		Brevibacterium albidum	5' TGGCCA 3' ACCGGT	5' ---TGG   CCA--- 3' 3' ---ACC   GGT--- 5'
Bal228I		Bacillus alcalophilus 228	5' GGNCC 3' CCNGG	5' ---G   GNCC--- 3' 3' ---CCNG   G--- 5'	AspS9I, AvcI, BavAII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
BamHI [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]	1BAM	Bacillus amyloliquefaciens H	5' GGATCC 3' CCTAGG	5' ---G   GATCC--- 3' 3' ---CCTAG   G--- 5'	AccEBI, AliI, ApaCI, AsiI, Bce751I, Bsp98I, Bsp4009I, BspAAIII, CelI, Nsp29132II, NspSAIV, SolI, SurI
BamNII		Bacillus amyloliquefaciens N	5' GGWCC 3' CCWGG	5' ---G   GWCC--- 3' 3' ---CCWG   G--- 5'	BcuAI, BsrAI, CauI, EagMI, FdiI, HgiCII, HgiJI, SinI
BanI [31] [32]		Bacillus aneurinolyticus	5' GGYRCC 3' CCRYGG	5' ---G   GYRCC--- 3' 3' ---CCRYG   G--- 5'	AccB1I, BbvBI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
BanII [12] [31]		Bacillus aneurinolyticus	5' GRGCYC 3' CYCGRG	5' ---GRGCY   C--- 3' 3' ---C   YCGRG--- 5'
BanIII [31]		Bacillus aneurinolyticus	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	AagI, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
BanAI		Bacillus anthracis	5' GGCC 3' CCGG	5' ---GG   CC--- 3' 3' ---CC   GG--- 5'
BasI		Bacillus sp.	5' CCAN5TGG 3' GGTN5ACC	5' ---CCANNNN   NTGG--- 3' 3' ---GGTN   NNNNACC--- 5'	AccB7I, AcpII, Asp10HII, Esp1396I, PflBI, PflMI, Van91I
BauI		Bacillus aquaemaris RFL1	5' CACGAG 3' GTGCTC	5' ---C   ACGAG--- 3' 3' ---GTGCT   C--- 5'
BavI		Bacillus alvei	5' CAGCTG 3' GTCGAC	5' ---CAG   CTG--- 3' 3' ---GTC   GAC--- 5'
BavAI		Bacillus alvei A	5' CAGCTG 3' GTCGAC	5' ---CAG   CTG--- 3' 3' ---GTC   GAC--- 5'
BavAII		Bacillus alvei A	5' GGNCC 3' CCNGG	5' ---G   GNCC--- 3' 3' ---CCNG   G--- 5'	AspS9I, AvcI, BavBII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
BavBI		Bacillus alvei B	5' CAGCTG 3' GTCGAC	5' ---CAG   CTG--- 3' 3' ---GTC   GAC--- 5'
BavBII		Bacillus alvei B	5' GGNCC 3' CCNGG	5' ---G   GNCC--- 3' 3' ---CCNG   G--- 5'	AspS9I, Bac36I, BavAII, BshKI, BspBII, Bsu54I, FmuI, Pde12I
BavCI		Bacillus alvei C	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	AagI, BanIII, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
BbeI [33]		Bifidobacterium breve YIT4006	5' GGCGCC 3' CCGCGG	5' ---GGCGC   C--- 3' 3' ---C   CGCGG--- 5'
BbiII		Bifidobacterium bifidum YIT4007	5' GRCGYC 3' CYGCRG	5' ---GR   CGYC--- 3' 3' ---CYGC   RG--- 5'	AcyI, AhaII, BbiII, HgiHII, Hin1I, Hsp92I, Msp17I, PamII
Bbi24I		Bifidobacterium bifidum S-24	5' ACGCGT 3' TGCGCA	5' ---A   CGCGT--- 3' 3' ---TGCGC   A--- 5'
BbrI		Bordetella bronchiseptica 4994	5' AAGCTT 3' TTCGAA	5' ---A   AGCTT--- 3' 3' ---TTCGA   A--- 5'
Bbr7I		Bacillus brevis 7	5' GAAGAC 3' CTTCTG	5' ---GAAGACN6N   NNNNN--- 3' 3' ---CTTCTGN6NNNNNN   --- 5'
BbrPI [34] [35]		Bacillus brevis	5' CACGTG 3' GTGCAC	5' ---CAC   GTG--- 3' 3' ---GTG   CAC--- 5'	AcvI, BcoAI, Eco72I, PmaCI, PmlI, PspCI
BbsI [36]		Bacillus laterosporus	5' GAAGAC 3' CTTCTG	5' ---GAAGACNN   NNNN--- 3' 3' ---CTTCTGNNNNNN   --- 5'
BbuI [37]		Bacillus circulans	5' GCATGC 3' CGTACG	5' ---GCATG   C--- 3' 3' ---C   GTACG--- 5'
BbvI [38] [39]		Bacillus brevis	5' GCAGC 3' CGTCG	5' ---GCAGCN7N   NNNN--- 3' 3' ---CGTCGN7NNNNN   --- 5'	AlwXI, BseKI, BseXI, Bsp423I, Bst12I, Bst71I, BstV1I
BbvII [40]		Bacillus brevis 80	5' GAAGAC 3' CTTCTG	5' ---GAAGACNN   NNNN--- 3' 3' ---CTTCTGNNNNNN   --- 5'
Bbv12I [41]		Bacillus brevis 12	5' GWGCWC 3' CWCGWG	5' ---GWGCW   C--- 3' 3' ---C   WCGWG--- 5'	Alw21I, AspHI, Bsh45I, BsiHKAI, HgiAI,  HpyF46II,  MspV281I
Bbv16II		Bacillus brevis 16	5' GAAGAC 3' CTTCTG	5' ---GAAGACNN   NNNN--- 3' 3' ---CTTCTGNNNNNN   --- 5'
BbvAI		Bacillus brevis A	5' GAAN4TTC 3' CTTN4AAG	5' ---GAANN   NNTTC--- 3' 3' ---CTTNN   NNAAG--- 5'	Asp700I, MroXI, PdmI, XmnI
BbvAII		Bacillus brevis A	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	BavCI, Bci29I, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BbvAIII		Bacillus brevis A	5' TCCGGA 3' AGGCCT	5' ---T   CCGGA--- 3' 3' ---AGGCC   T--- 5'	AccIII, Aor13HI, BlfI, BseAI, Bsp13I, BspEI, Bsu23I, Kpn2I
BbvBI		Bacillus brevis B	5' GGYRCC 3' CCRYGG	5' ---G   GYRCC--- 3' 3' ---CCRYG   G--- 5'	BanI, BshNI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
BbvCI [42]		Bacillus brevis	5' CCTCAGC 3' GGAGTCG	5' ---CC   TCAGC--- 3' 3' ---GGAGT   CG--- 5'	AbeI
Bca77I		Bacillus caldolyticus	5' WCCGGW 3' WGGCCW	5' ---W   CCGGW--- 3' 3' ---WGGCC   W--- 5'
BccI		Bacteroides caccae	5' CCATC 3' GGTAG	5' ---CCATCNNNN   N--- 3' 3' ---GGTAGNNNNN   --- 5'
Bce4I		Bacillus cereus B4	5' GCN7GC 3' CGN7CG	5' ---GCNNNNN   NNGC--- 3' 3' ---CGNN   NNNNNCG--- 5'
Bce22I		Bacillus cereus 22	5' GGNCC 3' CCNGG	5' ---G   GNCC--- 3' 3' ---CCNG   G--- 5'	AspS9I, Bac36I, BavAII, BshKI, BspBII, CcuI, FmuI, Pde12I
Bce83I [43]		Bacillus cereus 83	5' CTTGAG 3' GAACTC	5' ---CTTGAGN13NNN   --- 3' 3' ---GAACTCN13N   NN--- 5'
Bce243I		Bacillus cereus	5' GATC 3' CTAG	5' ---   GATC--- 3' 3' ---CTAG   --- 5'	Bfi57I, Bsp143I, BspJI, BstMBI, CviAI, Kzo9I, NdeII, Sth368I
Bce751I		Bacillus cereus 751	5' GGATCC 3' CCTAGG	5' ---G   GATCC--- 3' 3' ---CCTAG   G--- 5'	BamHI, Bce751I, BnaI, Bsp98I, Bsp4009I, BstI, NspSAIV, Pfl8I
BceAI		Bacillus cereus 1315	5' ACGGC 3' TGCCG	5' ---ACGGCN11N   NN--- 3' 3' ---TGCCGN11NNN   --- 5'
BceBI		Bacillus cereus 1323	5' CGCG 3' GCGC	5' ---CG   CG--- 3' 3' ---GC   GC--- 5'	AccII, Bsh1236I, BtkI, Csp68KVI, FalII, FauBII, FnuDII, SelI, ThaI
BceCI		Bacillus cereus 1195	5' GCN7GC 3' CGN7CG	5' ---GCNNNNN   NNGC--- 3' 3' ---CGNN   NNNNNCG--- 5'
BcefI [44]		Bacillus cereus fluorescens	5' ACGGC 3' TGCCG	5' ---ACGGCN10NN   N--- 3' 3' ---TGCCGN10NNN   --- 5'
BcgI [45] [46]		Bacillus coagulans	5' CGAN6TGC 3' GCTN6ACG	5' ---CGAN6TGCN9NNN   --- 3' 3' ---GCTN6ACGN9N   NN--- 5'
Bci29I		Bacillus circulans 29	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	BavCI, BciBI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BciBI		Bacillus circulans B	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	BavCI, BcmI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BciBII		Bacillus circulans B	5' CCWGG 3' GGWCC	5' ---CC   WGG--- 3' 3' ---GGW   CC--- 5'	AjnI, ApyI, BptI, Bst1I, BstOI, BstM6I, Bst2UI, EcoRII, MvaI
BciVI [47]		Bacillus circulans	5' GTATCC 3' CATAGG	5' ---GTATCCN4NN   --- 3' 3' ---CATAGGN4N   N--- 5'	BfuI
BclI [15] [48] [49]		Bacillus caldolyticus	5' TGATCA 3' ACTAGT	5' ---T   GATCA--- 3' 3' ---ACTAG   T--- 5'	AbaI, BsiQI, BspXII, BstT7I, FbaI, Ksp22I,  ParI
BcmI		Bacillus sp.	5' ATCGAT 3' TAGCTA	5' ---AT   CGAT--- 3' 3' ---TAGC   TA--- 5'	BsuTUI, Bsu15I, BavCI, Bli86I, BspZEI, Rme21I, BseCI, BdiI
BcnI [50] [51] [52]	2ODH	Bacillus centrosporus RFL1	5' CCSGG 3' GGSCC	5' ---CC   SGG--- 3' 3' ---GGS   CC--- 5'	AhaI, AseII, AsuC2I, BpuMI, CauII, Eco1831I, HgiS22I,Kpn49kII, NciI
BcoI [53]		Bacillus coagulans SM 1	5' CYCGRG 3' GRGCYC	5' ---C   YCGRG--- 3' 3' ---GRGCY   C--- 5'	Ama87I, AquI, BsoBI, BstSI, Eco88I, NspSAI, OfoI, PunAI
Bco5I		Bacillus coagulans 5	5' CTCTTC 3' GAGAAG	5' ---CTCTTCN   NNN--- 3' 3' ---GAGAAGNNNN   --- 5'
Bco27I		Bacillus coagulans 27	5' CCGG 3' GGCC	5' ---C   CGG--- 3' 3' ---GGC   C--- 5'
Bco116I		Bacillus coagulans 116	5' CTCTTC 3' GAGAAG	5' ---CTCTTCN   NNN--- 3' 3' ---GAGAAGNNNN   --- 5'
Bco118I		Bacillus coagulans 118	5' RCCGGY 3' YGGCCR	5' ---R   CCGGY--- 3' 3' ---YGGCC   R--- 5'
BcoAI		Bacillus coagulans AUCM B-732	5' CACGTG 3' GTGCAC	5' ---CAC   GTG--- 3' 3' ---GTG   CAC--- 5'	AcvI, BbrPI, Eco72I, PmaCI, PmlI, PspCI
BcoKI		Bacillus coagulans	5' CTCTTC 3' GAGAAG	5' ---CTCTTCN   NNN--- 3' 3' ---GAGAAGNNNN   --- 5'
BcuI		Bacillus coagulans Vs 29-022	5' ACTAGT 3' TGATCA	5' ---A   CTAGT--- 3' 3' ---TGATC   A--- 5'	AhII, AclNI, SpeI
BcuAI		Bacillus cereus BKM B-814	5' GGWCC 3' CCWGG	5' ---G   GWCC--- 3' 3' ---CCWG   G--- 5'	BamNxI, BsrAI, Csp68KI, EagMI, FssI, HgiCII, HgiJI, SinI

Current list/Article: 

• Top
• Whole list navigation

Notes

1. Smith HO, Nathans D (December 1973). "Letter: A suggested nomenclature for bacterial host modification and restriction systems and their enzymes". J. Mol. Biol. 81 (3): 419–23. doi:10.1016/0022-2836(73)90152-6. PMID   4588280.
2. Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY (April 2003). "A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes". Nucleic Acids Res. 31 (7): 1805–12. doi:10.1093/nar/gkg274. PMC   152790 . PMID   12654995.
3. Jeremy MB, John LT, Lubert S (2002). "3. Protein Structure and Function". Biochemistry. San Francisco: W. H. Freeman. ISBN   0-7167-4684-0.
4. Anfinsen C.B. (1973). "Principles that Govern the Folding of Protein Chains". Science. 181 (4096): 223–30. doi:10.1126/science.181.4096.223. PMID   4124164.
5. Kessler C, Manta V (August 1990). "Specificity of restriction endonucleases and DNA modification methyltransferases a review (Edition 3)". Gene. 92 (1–2): 1–248. doi:10.1016/0378-1119(90)90486-B. PMID   2172084.
6. Pingoud A, Jeltsch A (September 2001). "Structure and function of type II restriction endonucleases". Nucleic Acids Res. 29 (18): 3705–27. doi:10.1093/nar/29.18.3705. PMC   55916 . PMID   11557805.
7. Sears LE, Zhou B, Aliotta JM, Morgan RD, Kong H (September 1996). "BaeI, another unusual BcgI-like restriction endonuclease". Nucleic Acids Res. 24 (18): 3590–2. doi:10.1093/nar/24.18.3590. PMC   146138 . PMID   8836187.
8. Ueno H, Kato I, Ishino Y (June 1996). "Cloning and expression of the BalI restriction-modification system". Nucleic Acids Res. 24 (12): 2268–70. doi:10.1093/nar/24.12.2268. PMC   145948 . PMID   8710495.
9. Gelinas RE, Myers PA, Weiss GH, Roberts RJ, Murray K (August 1977). "A specific endonuclease from Brevibacterium albidum". J Mol Biol. 114 (3): 433–40. doi:10.1016/0022-2836(77)90260-1. PMID   909093.
10. Wei H, Therrien C, Blanchard A, Guan S, Zhu Z (May 2008). "The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases". Nucleic Acids Res. 36 (9): e50. doi:10.1093/nar/gkn182. PMC   2396408 . PMID   18413342.
11. Nishigaki K, Kaneko Y, Wakuda H, Husimi Y, Tanaka T (August 1985). "Type II restriction endonucleases cleave single-stranded DNAs in general". Nucleic Acids Res. 13 (16): 5747–60. doi:10.1093/nar/13.16.5747. PMC   321909 . PMID   2994012.
12. Nelson M, Christ C, Schildkraut I (July 1984). "Alteration of apparent restriction endonuclease recognition specificities by DNA methylases". Nucleic Acids Res. 12 (13): 5165–73. doi:10.1093/nar/12.13.5165. PMC   318911 . PMID   6087274.
13. Nelson PS, Papas TS, Schweinfest CW (February 1993). "Restriction endonuclease cleavage of 5-methyl-deoxycytosine hemimethylated DNA at high enzyme-to-substrate ratios". Nucleic Acids Res. 21 (3): 681–6. doi:10.1093/nar/21.3.681. PMC   309169 . PMID   8441677.
14. Greene PJ, Heyneker HL, Bolivar F, Rodriguez RL, Betlach MC, Covarrubias AA, Backman K, Russel DJ, Tait R, Boyer HW (July 1978). "A general method for the purification of restriction enzymes". Nucleic Acids Res. 5 (7): 2373–80. doi:10.1093/nar/5.7.2373. PMC   342170 . PMID   673857.
15. Huang LH, Farnet CM, Ehrlich KC, Ehrlich M (March 1982). "Digestion of highly modified bacteriophage DNA by restriction endonucleases". Nucleic Acids Res. 10 (5): 1579–91. doi:10.1093/nar/10.5.1579. PMC   320551 . PMID   6280151.
16. Wilson GA, Young FE (September 1975). "Isolation of a sequence-specific endonuclease (BamI) from Bacillus amyloliquefaciens H". J Mol Biol. 97 (1): 123–5. doi:10.1016/S0022-2836(75)80028-3. PMID   1177312.
17. Roberts RJ, Wilson GA, Young FE (January 1977). "Recognition sequence of specific endonuclease BamH.I from Bacillus amyloliquefaciens H". Nature. 265 (5589): 82–4. Bibcode:1977Natur.265...82R. doi:10.1038/265082a0. PMID   834250. S2CID   4282096.
18. Brooks JE, Benner JS, Heiter DF, Silber KR, Sznyter LA, Jager-Quinton T, Moran LS, Slatko BE, Wilson GG, Nwankwo DO (February 1989). "Cloning the BamHI restriction modification system". Nucleic Acids Res. 17 (3): 979–97. doi:10.1093/nar/17.3.979. PMC   331717 . PMID   2537955.
19. Viadiu H, Aggarwal AK (May 2000). "Structure of BamHI bound to nonspecific DNA: a model for DNA sliding". Mol. Cell. 5 (5): 889–95. doi: 10.1016/S1097-2765(00)80329-9 . PMID   10882125.
20. George J, Chirikjian JG (April 1982). "Sequence-specific endonuclease BamHI: relaxation of sequence recognition". Proc Natl Acad Sci USA. 79 (8): 2432–6. Bibcode:1982PNAS...79.2432G. doi: 10.1073/pnas.79.8.2432 . PMC   346212 . PMID   6283522.
21. Mukhopadhyay P, Roy KB (1984). "Sequence-specific BamHI methylase. Purification and characterization". The Journal of Biological Chemistry. 259 (16): 10357–62. doi: 10.1016/S0021-9258(18)90972-5 . PMID   6469968.
22. Robinson CR, Sligar SG (April 1995). "Heterogeneity in molecular recognition by restriction endonucleases: osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity". Proc Natl Acad Sci USA. 92 (8): 3444–8. Bibcode:1995PNAS...92.3444R. doi: 10.1073/pnas.92.8.3444 . PMC   42183 . PMID   7724581.
23. Viadiu H, Aggarwal AK (October 1998). "The role of metals in catalysis by the restriction endonuclease BamHI". Nat Struct Biol. 5 (10): 910–6. doi:10.1038/2352. PMID   9783752. S2CID   25062657.
24. Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (August 1995). "Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding". Science. 269 (5224): 656–63. Bibcode:1995Sci...269..656N. doi:10.1126/science.7624794. PMID   7624794.
25. Roy KB, Vrushank D (July 1995). "Bam HI cleaves the self complementary dodecamer d-CGCGGAGCCGCG, before the two G's and possibly binds in the DNA major groove". Biochem Mol Biol Int. 36 (4): 759–70. PMID   8528138.
26. Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (May 1994). "Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis". Structure. 2 (5): 439–52. doi: 10.1016/S0969-2126(00)00045-9 . PMID   8081758.
27. Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (April 1994). "Structure of restriction endonuclease BamHI and its relationship to EcoRI". Nature. 368 (6472): 660–4. Bibcode:1994Natur.368..660N. doi:10.1038/368660a0. PMID   8145855. S2CID   2999008.
28. Roy KB, Vrushank D, Jayaram B (July 1994). "Use of isotope-dilution phenomenon to advantage in the determination of kinetic constants Km and Kcat for BamHI restriction endonuclease: an empirical and iterative approach". Anal Biochem. 220 (1): 160–4. doi:10.1006/abio.1994.1313. PMID   7978240.
29. Brooks JE, Nathan PD, Landry D, Sznyter LA, Waite-Rees P, Ives CL, Moran LS, Slatko BE, Benner JS (February 1991). "Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts". Nucleic Acids Res. 19 (4): 841–50. doi:10.1093/nar/19.4.841. PMC   333720 . PMID   1901989.
30. Mukhopadhyay P, Roy KB (October 1998). "Protein engineering of BamHI restriction endonuclease: replacement of Cys54 by Ala enhances catalytic activity". Protein Eng. 11 (10): 931–5. doi: 10.1093/protein/11.10.931 . PMID   9862213.
31. Sugisaki H, Maekawa Y, Kanazawa S, Takanami M (October 1982). "New restriction endonucleases from Acetobacter aceti and Bacillus aneurinolyticus". Nucleic Acids Res. 10 (19): 5747–52. doi:10.1093/nar/10.19.5747. PMC   320926 . PMID   6292849.
32. Schildkraut I, Lynch J, Morgan R (July 1987). "The cleavage site for the restriction endonucleases BanI and HgiC I is 5' ...G decreases GPyPuCC ...3'". Schildkraut I, Lynch J, Morgan R. 15 (13): 5492. doi:10.1093/nar/15.13.5492. PMC   305987 . PMID   3037499.
33. Khosaka T, Sakurai T, Takahashi H, Saito H (February 1982). "A new site-specific endonuclease Bbei from Bifidobacterium breve". Gene. 17 (2): 117–22. doi:10.1016/0378-1119(82)90063-4. PMID   6282709.
34. Vesely Z, Schmitz GG, Jarsch M, Kessler C (June 1990). "BbrPI, a novel PmacI isoschizomer from Bacillus brevis recognizing 5'-CAC/GTG-3'". Nucleic Acids Res. 18 (11): 3423. doi:10.1093/nar/18.11.3423. PMC   330975 . PMID   2162525.
35. Kafri T, Hershko A, Razin A (June 1993). "Probing CpG methylation at CACGTG with BbrPI restriction enzyme". Nucleic Acids Res. 21 (12): 2950. doi:10.1093/nar/21.12.2950. PMC   309701 . PMID   8332512.
36. Protozanova E, Demidov VV, Nielsen PE, Frank-Kamenetskii MD (July 2003). "Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes". Nucleic Acids Res. 31 (14): 3929–35. doi:10.1093/nar/gkg450. PMC   165965 . PMID   12853608.
37. Aubert E, Spurgeon S, Ray W, Davies J (October 1990). "Purification and characterization of an isoschizomer of SphI from Bacillus circulans". Nucleic Acids Res. 18 (20): 6152. doi:10.1093/nar/18.20.6152. PMC   332440 . PMID   2146591.
38. Gingeras TR, MIlazzo JP, Roberts RJ (November 1978). "A computer assisted method for the determination of restriction enzyme recognifion sites". Nucleic Acids Res. 5 (11): 4105–27. doi:10.1093/nar/5.11.4105. PMC   342737 . PMID   724510.
39. Hattman S, Keister T, Gottehrer A (October 1978). "Sequence specificity of DNA methylases from Bacillus amyloliquefaciens and Bacillus brevis". J Mol Biol. 124 (4): 701–11. doi:10.1016/0022-2836(78)90178-X. PMID   712853.
40. Matvienko NI, Pachkunov DM, Kramarov VM (1984). "The recognition sequence of site-specific endonuclease BbvII from Bacillus brevis 80". FEBS Lett. 177: 23–36. doi: 10.1016/0014-5793(84)80973-4 .
41. Repin VE, Rechkunova NI, Degtyarev SK, Hachaturyan AA, Afrikyan EK (1989). "Aerobic spore-forming bacteria as producers of restriction endonucleases". Biol J Armenia. 42: 969–72.
42. Heiter DF, Lunnen KD, Wilson GG (May 2005). "Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI". J Mol Biol. 348 (3): 631–40. doi:10.1016/j.jmb.2005.02.034. PMID   15826660.
43. Matvienko NN; Kramarov VM; Ivanov LYu; Matvienko NI (April 1992). "Bce83I, a restriction endonuclease from Bacillus cereus 83 which recognizes novel nonpalindromic sequence 5'-CTTGAG-3' and is stimulated by S-adenosylmethionine". Nucleic Acids Res. 20 (7): 1803. doi:10.1093/nar/20.7.1803. PMC   312275 . PMID   1315959.
44. Venetianer P, Orosz A (April 1988). "BcefI, a new type IIS restriction endonuclease". Nucleic Acids Res. 16 (7): 3053–60. doi:10.1093/nar/16.7.3053. PMC   336451 . PMID   2835751.
45. Kong H, Roemer SE, Waite-Rees PA, Benner JS, Wilson GG, Nwankwo DO (January 1994). "Characterization of BcgI, a new kind of restriction-modification system". J Biol Chem. 269 (1): 683–90. doi: 10.1016/S0021-9258(17)42403-3 . PMID   8276869.
46. Kong H, Morgan RD, Maunus RE, Schildkraut I (February 1993). "A unique restriction endonuclease, BcgI, from Bacillus coagulans". Nucleic Acids Res. 21 (4): 987–91. doi:10.1093/nar/21.4.987. PMC   309233 . PMID   8451198.
47. Roberts RJ, Macelis D (January 1997). "REBASE-restriction enzymes and methylases". Nucleic Acids Res. 25 (1): 248–62. doi:10.1093/nar/25.1.248. PMC   146408 . PMID   9016548.
48. Rowland GC, Lim PP, Glass RE (July 1992). "'Stop-codon-specific' restriction endonucleases: their use in mapping and gene manipulation". Gene. 116 (1): 21–6. doi:10.1016/0378-1119(92)90624-X. PMID   1628840.
49. Bingham AH, Atkinson T, Sciaky D, Roberts RJ (October 1978). "A specific endonuclease from Bacillus caldolyticus". Nucleic Acids Res. 5 (10): 3457–67. doi:10.1093/nar/5.10.3457. PMC   342687 . PMID   724493.
50. Janulaitis A, Klimasauskas S, Petrusyte M, Butkus V (September 1983). "Cytosine modification in DNA by BcnI methylase yields N4-methylcytosine". FEBS Lett. 161 (1): 131–4. doi: 10.1016/0014-5793(83)80745-5 . PMID   6884523.
51. Janulaitis AA, Petrusite MA, Jaskelavicene BP, Krayev AS, Skryabin KG, Bayev AA (January 1982). "A new restriction endonuclease BcnI from Bacillus centrosporus RFL 1". FEBS Lett. 137 (2): 178–80. doi: 10.1016/0014-5793(82)80343-8 . PMID   6277689.
52. Sokolowska M, Kaus-Drobek M, Czapinska H, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M (June 2007). "Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA". J Mol Biol. 369 (3): 722–34. doi:10.1016/j.jmb.2007.03.018. PMID   17445830.
53. Leung SM, Kam KM, Chan KY, Shaw PC (1990). "Purification and characterization of restriction endonuclease BcoI from a soil isolate of Bacillus coagulans". FEMS Microbiol Lett. 66 (2): 153–6. doi: 10.1111/j.1574-6968.1990.tb03988.x . PMID   1936944.