| Enzyme | PDB code | Source |  Recognition sequence  | Cut |  Isoschizomers  | 
|  BstI  |  |  Bacillus stearothermophilus 1503-4R  |  5' GGATCC 
  3' CCTAGG  |  5' ---G   GATCC--- 3' 
  3' ---CCTAG   G--- 5'  | AccEBI, AliI, ApaCI, AsiI, BamHI, BnaI, BspAAIII, Nsp29132II | 
|  Bst1I  |  |  Bacillus stearothermophilus 1  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AglI, BseBI, Bse17I, BstNI, CbrI, CthII, EcoRII, MvaI, SspAI, TaqXI | 
|  Bst2I  |  |  Bacillus stearothermophilus 2  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AglI, BseBI, Bse17I, BstNI, BstOI, Bst2UI, CthII, EcoRII, MvaI | 
|  Bst6I  |  |  Bacillus stearothermophilus 6  |  5' CTCTTC 
  3' GAGAAG  |  5' ---CTCTTCN   NNN--- 3' 
  3' ---GAGAAGNNNN   --- 5'  |  | 
|  Bst11I  |  |  Bacillus stearothermophilus 11  |  5' ACTGG 
  3' TGACC  |  5' ---ACTGGN   --- 3' 
  3' ---TGAC   CN--- 5'  |  | 
|  Bst12I  |  |  Bacillus stearothermophilus 12  |  5' GCAGC 
  3' CGTCG  |  5' ---GCAGCN7N   NNNN--- 3' 
  3' ---CGTCGN7NNNNN   --- 5'  | AlwXI, BbvI, BseKI, BseXI, Bsp423I, Bst71I, BstV1I | 
|  Bst19I  |  |  Bacillus stearothermophilus 19  |  5' GCATC 
  3' CGTAG  |  5' ---GCATCNNNN   NN--- 3' 
  3' ---CGTAGNNNNNN   --- 5'  |  | 
|  Bst19II  |  |  Bacillus stearothermophilus 19  |  5' GATC 
  3' CTAG  |  5' ---   GATC--- 3' 
  3' ---CTAG   --- 5'  | BfuCI, Bsp2095I, BspKT6I, CcyI, FnuCI, MboI, NmeCI, SsiAI | 
|  Bst28I  |  |  Bacillus stearothermophilus 28  |  5' ATCGAT 
  3' TAGCTA  |  5' ---AT   CGAT--- 3' 
  3' ---TAGC   TA--- 5'  | BciBI, BdiI, Bli41I, Bsa29I, Bsp106I, BspDI, LplI, SpmI, ZhoI | 
|  Bst38I  |  |  Bacillus stearothermophilus 38  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AorI, BseBI, Bse17I, BsiLI, BspNI, BstOI, Bst2UI, EcoRII, MvaI | 
|  Bst40I  |  |  Bacillus stearothermophilus 40  |  5' CCGG 
  3' GGCC  |  5' ---C   CGG--- 3' 
  3' ---GGC   C--- 5'  |  | 
|  Bst71I  |  |  Bacillus stearothermophilus 71  |  5' GCAGC 
  3' CGTCG  |  5' ---GCAGCN7N   NNNN--- 3' 
  3' ---CGTCGN7NNNNN   --- 5'  | AlwXI, BbvI, BseKI, BseXI, Bsp423I, Bst12I, BstV1I | 
|  Bst98I  |  |  Bacillus stearothermophilus C98  |  5' CTTAAG 
  3' GAATTC  |  5' ---C   TTAAG--- 3' 
  3' ---GAATT   C--- 5'  |  | 
|  Bst100I  |  |  Bacillus stearothermophilus 100  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, EcoRII, MvaI, SleI | 
|  Bst1107I  |  |  Bacillus stearothermophilus RFL1107  |  5' GTATAC 
  3' CATATG  |  5' ---GTA   TAC--- 3' 
  3' ---CAT   ATG--- 5'  |  | 
|  BstACI  |  |  Bacillus stearothermophilus AC  |  5' GRCGYC 
  3' CYGCRG  |  5' ---GR   CGYC--- 3' 
  3' ---CYGC   RG--- 5'  | AcyI, AhaII, AosII, AstWI, AsuIII, BsaHI, HgiI, HgiDI, Hsp92I | 
|  BstAPI  |  |  Bacillus stearothermophilus AP  |  5' GCAN4NTGC 
  3' CGTN4NACG  |  5' ---GCANNNN   NTGC--- 3' 
  3' ---CGTN   NNNNACG--- 5'  | ApaBI | 
|  BstAUI  |  |  Bacillus stearothermophilus AU  |  5' TGTACA 
  3' ACATGT  |  5' ---T   GTACA--- 3' 
  3' ---ACATG   T--- 5'  | | AauI,   |  BsmRI,  | Bsp1407I, BsrGI,   |  | Ssp4800I, SspBI |  
  | 
|  BstBI  |  |  Bacillus stearothermophilus B225  |  5' TTCGAA 
  3' AAGCTT  |  5' ---TT   CGAA--- 3' 
  3' ---AAGC   TT--- 5'  | AcpI, Bim19I, Bpu14I, BspT104I, Csp45I, LspI, NspV, SspRFI | 
|  Bst2BI  |  |  Bacillus stearothermophilus 2B  |  5' CACGAG 
  3' GTGCTC  |  5' ---C   ACGAG--- 3' 
  3' ---GTGCT   C--- 5'  |  | 
|  BstBAI  |  |  Bacillus stearothermophilus BA  |  5' YACGTR 
  3' RTGCAY  |  5' ---YAC   GTR--- 3' 
  3' ---RTG   CAY--- 5'  |  | 
|  BstBSI  |  |  Bacillus stearothermophilus BS  |  5' GTATAC 
  3' CATATG  |  5' ---GTA   TAC--- 3' 
  3' ---CAT   ATG--- 5'  |  | 
|  BstB7SI  |  |  Bacillus stearothermophilus B7S  |  5' RCCGGY 
  3' YGGCCR  |  5' ---R   CCGGY--- 3' 
  3' ---YGGCC   R--- 5'  |  | 
|  BstBS32I  |  |  Bacillus stearothermophilus BS32  |  5' GAAGAC 
  3' CTTCTG  |  5' ---GAAGACNN   NNNN--- 3' 
  3' ---CTTCTGNNNNNN   --- 5'  |  | 
|  BstBZ153I  |  |  Bacillus stearothermophilus BZ153  |  5' GCGCGC 
  3' CGCGCG  |  5' ---G   CGCGC--- 3' 
  3' ---CGCGC   G--- 5'  |  | 
|  Bst4CI  |  |  Bacillus stearothermophilus 4C  |  5' ACNGT 
  3' TGNCA  |  5' ---ACN   GT--- 3' 
  3' ---TG   NCA--- 5'  |  | 
|  BstC8I  |  |  Bacillus stearothermophilus C8  |  5' GCNNGC 
  3' CGNNCG  |  5' ---GCN   NGC--- 3' 
  3' ---CGN   NCG--- 5'  |  | 
|  BstD102I  |  |  Bacillus stearothermophilus D102  |  5' CCGCTC 
  3' GGCGAG  |  5' ---CCG   CTC--- 3' 
  3' ---GGC   GAG--- 5'  | AccBSI, BsrBI, Bst31NI, MbiI | 
|  BstDEI  |  |  Bacillus stearothermophilus DE  |  5' CTNAG 
  3' GANTC  |  5' ---C   TNAG--- 3' 
  3' ---GANT   C--- 5'  |  | 
|  BstDSI  |  |  Bacillus stearothermophilus DS  |  5' CCRYGG 
  3' GGYRCC  |  5' ---C   CRYGG--- 3' 
  3' ---GGYRC   C--- 5'  |  | 
|  BstEII  |  |  Bacillus stearothermophilus ET  |  5' GGTNACC 
  3' CCANTGG  |  5' ---G   GTNACC--- 3' 
  3' ---CCANTG   G--- 5'  | AcrII, BstPI, BstT9I, BstT10I, EcaI, Eco91I, EcoO65I, NspSAII, PspEI | 
|  BstENI  |  |  Bacillus stearothermophilus EN  |  5' CCTN4NAGG 
  3' GGAN4NTCC  |  5' ---CCTNN   NNNAGG--- 3' 
  3' ---GGANNN   NNTCC--- 5'  |  | 
|  BstENII  |  |  Bacillus stearothermophilus EN  |  5' GATC 
  3' CTAG  |  5' ---   GATC--- 3' 
  3' ---CTAG   --- 5'  | BfuCI, Bsp2095I, BspKT6I, CcyI, FnuCI, MboI, NmeCI, SsiAI | 
|  BstEZ359I  |  |  Bacillus stearothermophilus EZ359  |  5' GTTAAC 
  3' CAATTG  |  5' ---GTT   AAC--- 3' 
  3' ---CAA   TTG--- 5'  |  | 
|  BstFI  |  |  Bacillus stearothermophilus FH58  |  5' AAGCTT 
  3' TTCGAA  |  5' ---A   AGCTT--- 3' 
  3' ---TTCGA   A--- 5'  |  | 
|  BstF5I  |  |  Bacillus stearothermophilus F5  |  5' GGATG 
  3' CCTAC  |  5' ---GGATGNN   --- 3' 
  3' ---CCTAC   NN--- 5'  |  | 
|  BstFNI  |  |  Bacillus stearothermophilus  |  5' CGCG 
  3' GCGC  |  5' ---CG   CG--- 3' 
  3' ---GC   GC--- 5'  | AccII, BceBI, BepI, Bpu95I, BstUI, Csp68KVI, FauBII, MvnI, SelI | 
|  BstFZ438I  |  |  Bacillus stearothermophilus FZ438  |  5' CCCGC 
  3' GGGCG  |  5' ---CCCGCNNNN   NN--- 3' 
  3' ---GGGCGNNNNNN   --- 5'  |  | 
|  BstGZ53I  |  |  Bacillus stearothermophilus GZ53  |  5' CGTCTC 
  3' GCAGAG  |  5' ---CGTCTCN   NNNN--- 3' 
  3' ---GCAGAGNNNNN   --- 5'  |  | 
|  BstH2I  |  |  Bacillus stearothermophilus H2  |  5' RGCGCY 
  3' YCGCGR  |  5' ---RGCGC   Y--- 3' 
  3' ---Y   CGCGR--- 5'  | | AccB2I,   |  BfoI,  | Bme142I,   |  | Bsp143II, HaeII, LpnI |  
  | 
|  BstH9I  |  |  Bacillus stearothermophilus H9  |  5' GGATC 
  3' CCTAG  |  5' ---GGATCNNNN   N--- 3' 
  3' ---CCTAGNNNNN   --- 5'  | | AclWI, AlwI, BinI,   |  BpuFI,  | BspPI, |  
 |  Bst31TI, BthII, Bth617I,  | EacI |  
  | 
|  BstHHI  |  |  Bacillus stearothermophilus HH  |  5' GCGC 
  3' CGCG  |  5' ---GCG   C--- 3' 
  3' ---C   GCG--- 5'  | AspLEI, BspLAI, CfoI, FnuDIII, HhaI, Hin6I, HinP1I, HsoI, HspAI, SciNI | 
|  BstHPI  |  |  Bacillus stearothermophilus HP  |  5' GTTAAC 
  3' CAATTG  |  5' ---GTT   AAC--- 3' 
  3' ---CAA   TTG--- 5'  |  | 
|  BstHZ55I  |  |  Bacillus stearothermophilus HZ55  |  5' CCAN6TGG 
  3' GGTN6ACC  |  5' ---CCANNNNN   NTGG--- 3' 
  3' ---GGTN   NNNNNACC--- 5'  |  | 
|  BstIZ316I  |  |  Bacillus stearothermophilus IZ316  |  5' CACNNNGTG 
  3' GTGNNNCAC  |  5' ---CACNNN   GTG--- 3' 
  3' ---GTG   NNNCAC--- 5'  | AdeI, DraIII | 
|  BstJZ301I  |  |  Bacillus stearothermophilus JZ301  |  5' CTNAG 
  3' GANTC  |  5' ---C   TNAG--- 3' 
  3' ---GANT   C--- 5'  |  | 
|  BstKTI  |  |  Bacillus stearothermophilus KT  |  5' GATC 
  3' CTAG  |  5' ---GAT   C--- 3' 
  3' ---C   TAG--- 5'  | AspMDI, Bsp2095I, Bst19II, BspKT6I, DpnII, MboI, NmeCI, SsiAI | 
|  BstM6I  |  |  Bacillus stearothermophilus M6  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, Fsp1604I, MvaI | 
|  BstMAI  |  |  Bacillus stearothermophilus MA  |  5' GTCTC 
  3' CAGAG  |  5' ---GTCTCN   NNNNN--- 3' 
  3' ---CAGAGNNNNN   N--- 5'  | | Alw26I,   |  BcoDI, BscQII,  | BsmAI,   |  | BsoMAI |  
  | 
|  BstMBI  |  |  Bacillus stearothermophilus MB  |  5' GATC 
  3' CTAG  |  5' ---   GATC--- 3' 
  3' ---CTAG   --- 5'  | Bce243I, Bsp105I, BspFI, BstKTI, CpfI, HacI, NdeII, Sth368I | 
|  BstMCI  |  |  Bacillus stearothermophilus MC  |  5' CGRYCG 
  3' GCYRGC  |  5' ---CGRY   CG--- 3' 
  3' ---GC   YRGC--- 5'  |  | 
|  BstMWI  |  |  Bacillus stearothermophilus MW  |  5' GCN7GC 
  3' CGN7CG  |  5' ---GCNNNNN   NNGC--- 3' 
  3' ---CGNN   NNNNNCG--- 5'  |  | 
|  BstMZ611I  |  |  Bacillus stearothermophilus MZ611  |  5' CCNGG 
  3' GGNCC  |  5' ---   CCNGG--- 3' 
  3' ---GGNCC   --- 5'  |  | 
|  BstNI  |  |  Bacillus stearothermophilus  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AjnI, BciBII, BptI, Bst1I, BstOI, Bst2UI, Fsp1604I, SniI, Sth117I | 
|  Bst31NI  |  |  Bacillus stearothermophilus 31N  |  5' CCGCTC 
  3' GGCGAG  |  5' ---CCG   CTC--- 3' 
  3' ---GGC   GAG--- 5'  | AccBSI, BsrBI, BstD102I, MbiI | 
|  BstNSI  |  |  Bacillus stearothermophilus 1161NS  |  5' RCATGY 
  3' YGTACR  |  5' ---RCATG   Y--- 3' 
  3' ---Y   GTACR--- 5'  |  | 
|  BstNZ169I  |  |  Bacillus stearothermophilus NZ169  |  5' ATCGAT 
  3' TAGCTA  |  5' ---AT   CGAT--- 3' 
  3' ---TAGC   TA--- 5'  | BanIII, BciBI, BdiI, Bli41I, Bsa29I, BspDI, LplI, Rme21I, SpmI, ZhoI | 
|  BstOI  |  |  Bacillus stearothermophilus O22  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AjnI, ApyI, BciBII, BptI, Bst1I, Bst2UI, Fsp1604I, SniI, Sth117I | 
|  BstOZ616I  |  |  Bacillus stearothermophilus OZ616  |  5' GGGAC 
  3' CCCTG  |  5' ---GGGACN8NN   NNNN--- 3' 
  3' ---CCCTGN8NNNNNN   --- 5'  |  | 
|  BstPI  |  |  Bacillus stearothermophilus  |  5' GGTNACC 
  3' CCANTGG  |  5' ---G   GTNACC--- 3' 
  3' ---CCANTG   G--- 5'  | AcrII, AspAI, BstEII, BstT9I, EcaI, Eco91I, EcoO65I, NspSAII, PspEI | 
|  BstPAI  |  |  Bacillus stearothermophilus PA  |  5' GACN4GTC 
  3' CTGN4CAG  |  5' ---GACNN   NNGTC--- 3' 
  3' ---CTGNN   NNCAG--- 5'  |  | 
|  BstPZ418I  |  |  |  5' GGATG 
  3' CCTAC  |  5' ---GGATGN8N   NNNN--- 3' 
  3' ---CCTACN8NNNNN   --- 5'  |  | 
|  BstPZ740I  |  |  Bacillus stearothermophilus PZ740  |  5' CTTAAG 
  3' GAATTC  |  5' ---C   TTAAG--- 3' 
  3' ---GAATT   C--- 5'  |  | 
|  BstRZ246I  |  |  Bacillus stearothermophilus RZ246  |  5' ATTTAAAT 
  3' TAAATTTA  |  5' ---ATTT   AAAT--- 3' 
  3' ---TAAA   TTTA--- 5'  |  | 
|  BstSI  |  |  Bacillus stearothermophilus S183  |  5' CYCGRG 
  3' GRGCYC  |  5' ---C   YCGRG--- 3' 
  3' ---GRGCY   C--- 5'  | Ama87I, AvaI, Bse15I, BsoBI, Eco27kI, NspIII, OfoI, PunAI | 
|  BstSCI  |  |  Bacillus stearothermophilus SC  |  5' CCNGG 
  3' GGNCC  |  5' ---   CCNGG--- 3' 
  3' ---GGNCC   --- 5'  |  | 
|  BstSFI  |  |  Bacillus stearothermophilus SF  |  5' CTRYAG 
  3' GAYRTC  |  5' ---C   TRYAG--- 3' 
  3' ---GAYRT   C--- 5'  |  | 
|  BstSNI  |  |  Bacillus stearothermophilus SN  |  5' TACGTA 
  3' ATGCAT  |  5' ---TAC   GTA--- 3' 
  3' ---ATG   CAT--- 5'  |  | 
|  BstSWI  |  |  Bacillus stearothermophilus SW  |  5' ATTTAAAT 
  3' TAAATTTA  |  5' ---ATTT   AAAT--- 3' 
  3' ---TAAA   TTTA--- 5'  |  | 
|  BstT7I  |  |  Bacillus stearothermophilus T7  |  5' TGATCA 
  3' ACTAGT  |  5' ---T   GATCA--- 3' 
  3' ---ACTAG   T--- 5'  | | AbaI, BclI, BsiQI,   |  | BspXII, FbaI, Ksp22I,   |  ParI  |  
  | 
|  BstT9I  |  |  Bacillus stearothermophilus T9  |  5' GGTNACC 
  3' CCANTGG  |  5' ---G   GTNACC--- 3' 
  3' ---CCANTG   G--- 5'  | AspAI, Bse64I, BstT10I, BstPI, Eco91I, EcoO128I, NspSAII, PspEI | 
|  BstT10I  |  |  Bacillus stearothermophilus T10  |  5' GGTNACC 
  3' CCANTGG  |  5' ---G   GTNACC--- 3' 
  3' ---CCANTG   G--- 5'  | AspAI, BseT10I, BstEII, BstT10I, Eco91I, EcoO128I, NspSAII, PspEI | 
|  Bst31TI  |  |  Bacillus stearothermophilus 31T  |  5' GGATC 
  3' CCTAG  |  5' ---GGATCNNNN   N--- 3' 
  3' ---CCTAGNNNNN   --- 5'  |  | 
|  BstTS5I  |  |  Bacillus stearothermophilus TS5  |  5' GAAGAC 
  3' CTTCTG  |  5' ---GAAGACNN   NNNN--- 3' 
  3' ---CTTCTGNNNNNN   --- 5'  |  | 
|  BstUI  |  |  Bacillus stearothermophilus U458  |  5' CGCG 
  3' GCGC  |  5' ---CG   CG--- 3' 
  3' ---GC   GC--- 5'  | AccII, BceBI, BepI, Bpu95I, BtkI, Csp68KVI, FauBII, MvnI, SelI | 
|  Bst2UI  |  |  Bacillus stearothermophilus 2U  |  5' CCWGG 
  3' GGWCC  |  5' ---CC   WGG--- 3' 
  3' ---GGW   CC--- 5'  | AjnI, BciBII, BptI, Bst1I, BstOI, BstM6I, SniI, SslI, TaqXI, ZanI | 
|  BstVI  |  |  Bacillus stearothermophilus V  |  5' CTCGAG 
  3' GAGCTC  |  5' ---C   TCGAG--- 3' 
  3' ---GAGCT   C--- 5'  | BluI, BssHI, MlaAI, PanI, SauLPII, SciI, SlaI, StrI, XhoI | 
|  BstV1I  |  |  Bacillus stearothermophilus V1  |  5' GCAGC 
  3' CGTCG  |  5' ---GCAGCN7N   NNNN--- 3' 
  3' ---CGTCGN7NNNNN   --- 5'  | AlwXI, BbvI, BseKI, BseXI, Bsp423I, Bst12I, Bst71I | 
|  BstV2I  |  |  Bacillus stearothermophilus V2  |  5' GAAGAC 
  3' CTTCTG  |  5' ---GAAGACNN   NNNN--- 3' 
  3' ---CTTCTGNNNNNN   --- 5'  |  | 
|  BstXI  |  |  Bacillus stearothermophilus X1  |  5' CCAN6TGG 
  3' GGTN6ACC  |  5' ---CCANNNNN   NTGG--- 3' 
  3' ---GGTN   NNNNNACC--- 5'  |  | 
|  BstX2I  |  |  Bacillus stearothermophilus X2  |  5' RGATCY 
  3' YCTAGR  |  5' ---R   GATCY--- 3' 
  3' ---YCTAG   R--- 5'  |  | 
|  BstYI  |  1SDO  |  Bacillus stearothermophilus Y406  |  5' RGATCY 
  3' YCTAGR  |  5' ---R   GATCY--- 3' 
  3' ---YCTAG   R--- 5'  |  | 
|  BstZI  |  |  Bacillus stearothermophilus Z130  |  5' CGGCCG 
  3' GCCGGC  |  5' ---C   GGCCG--- 3' 
  3' ---GCCGG   C--- 5'  | AaaI, BseX3I, EagI, EclXI, Eco52I, SenPT16I, XmaIII | 
|  BstZ17I  |  |  Bacillus stearothermophilus 38M  |  5' GTATAC 
  3' CATATG  |  5' ---GTA   TAC--- 3' 
  3' ---CAT   ATG--- 5'  |  |