Macromonas bipunctata

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Macromonas bipunctata
Bergmilchkammer 04.jpg
Moonmilk in the cave Bergmilchkammer
Scientific classification
Domain:
Bacteria
Phylum:
Pseudomonadota
Class:
Betaproteobacteria
Order:
Burkholderiales
Family:
Comamonadaceae
Genus:
Macromonas
Species:
M. bipunctata
Binomial name
Macromonas bipunctata

Macromonasbipunctata is a Gram-negative, colorless, and heterotrophic sulfur bacterium of the genus Macromonas . [1] It is commonly found in sewage aeration tanks and caves where moonmilk has formed. [1] [2] In the 1920s, researcher Gicklhorn first discovered this organism under the name Pseudomonas bipunctata. [2] After further study and culturing by Utermöhl and Koppe, in 1923, it was later renamed Macromonas bipunctata. [2] This organism is thought to be non-pathogenic species. In fact, the moonmilk produced was referenced as a remedy for infections in the Middle Ages. [3] [4]

Contents

Background

History

In the Middle Ages, "moonmilk" was used as a medicine. [5] [6] People often used it to cure infections and accelerate the healing process. [5] [6] Moonmilk is more than simply Macromonas bipunctata. [5] [6] It also contains populations of cyanobacteria, fungi, green algae, and actinomycetes, which are the main producers of antibiotics. [5] [6] This could explain why it was effective as a potential agent for healing.

Etymology

M. bipunctata was first isolated by Gicklhorn in the slime of a large basin Gratz in a botanical garden in 1924. [1] [2] [4] [7] Gicklhorn treated this species as a colorless sulfur bacteria and called it Pseudomonas bipunctata. [4] [7] The Greek root "monad/monas" was commonly used for microbiology to indicate a unicellular or single unit organism(s)/bacterium in the 1920s. Furthermore, bipunctata can be separated into the Latin roots "bi", meaning two, and "punctata" , meaning spotted, as seen in cultured M. bipunctata.

Years later, Dubinina, Grabovich, and La Rivière isolated this species from the precipitates of sewage aeration tanks called the white mat. Upon more research of this organism, it was renamed Macromonas bipunctata. [1] "Macro" is the Greek term for large, as the cell itself is on average larger than most bacteria. Additionally, this species can also be found in many caves where moonmilk is present. [1] [5] [6]

Microbiology

Macromonas bipunctata is a Gram-negative, aerobic, irregular/pear shaped, heterotrophic sulfur bacterium. [1] [2] M. bipunctata has a very large cell area at 9 µm x 20 µm . [1] [2] Its motility consists of flagella 20–40 µm long that moves around using a structural beam of polar flagella located at one end of its body.

Phylogeny and taxonomy

The closest species to Macromonasbipunctata within the class Betaproteobacteria are Malikiagranosa and Malikiaspinosa based on 16S rRNA gene as shown in many previous studies. Malikia nests within the family Comamonadaceae in the phylum Pseudomonadota and is also aerobic. [2] [3] Malikia granosa has a 96.5% similarity to M. bipunctata, whereas Hydrogenophaga flava has a 95.61% similarity in its 16S rRNA gene. [8]

Culturing

Most of the culturing procedures model Dubinina and Grabovich's 1984 article on M. bipunctata: it includes sodium acetate (1 g/L), calcium chloride (0.1 g/L), casein hydrolysate (0.1g/L), yeast extract (0.1g/L), and agar (1g/L) along with a vitamin supplement, trace elements, and FeS as a sulfide source. [3] M. bipunctata was cultured on an agar plate for 2–3 days at 28 °C (mesophile as optimum for cultivation set at around 28 degrees) before several species of Macromonas bipunctata appeared. [1] [2] The optimal pH level for growing is around 7.2–7.4. [1] [2] The colonies that form produce a white film on the surface of the plate along with flat, finegrained colonies of 1–4 mm diameter. [3] M. bipunctata has a cell area at 9 µm x 20 µm . [1] [2] This species is also pear-shaped, gram-negative and catalase positive. [1] [3]

Genomics

Many of the studies using M. bipunctata still rely heavily on its morphological characteristics. [4] However, it has been used as a phylogenetic comparison frequently so its 16s rRNA is catalogued: it is 1461 bp. [9] The same study shows that the genome contains 67.6% GC content. [9]

Metabolism

Macromonas bipunctata has been cultured in many studies that show H2O2 is formed in different biochemical reactions: not only in the process of respiration with the participation of enzymes of the electron transport chain, but also in the course of utilization of intracellular oxalate inclusions in the cytoplasm. [2] [3] [4] Oxidation of oxalate inclusions by oxalate oxidase leads to H2O2 accumulation. [2] [3] [9] [10] Furthermore, in the end process of becoming a toxic metabolite, it would decompose upon chemical interaction with the reduced sulfur compounds, whose presence is characteristic for the habitat of these bacteria. [2] [3] [9] [10] When grown on the media containing organic acids of the TCA cycle, the unicellular sulfur bacterium M.bipunctata is able to synthesize and store calcium oxalates inside the cell. [2] [3] [9] [10] This process is possible due to the presence of the high oxaloacetate hydrolase activity in M.bipunctata. [3] [10]

The oxalate metabolism throughout different cultures was seen through three different enzymes. [2] [3] [9] [10] One of them leads to the formation of glyoxylate, which may then enter bio-synthetic reactions. [1] [2] [7] The second way implies oxidation of oxalate to CO2 via formate, which may be significant in energy metabolism. [1] [2] The third way is oxidation of oxalate by oxalate oxidase. [2] [3] [7]

Furthermore, M.bipunctata was found that reduced sulfur compounds such as H2S were not used by the strains as electron donors, rather, their oxidation was due to interaction with H2O2. [1] This was a main product of O2 reduction in respiration. [1] [2] It is assumed that Macromonas bipunctata, at least in part, is responsible for the metabolism of organic acids and calcium deposition in the form of a calcite crystals. [2] [9] This bacterium recently classified as colorless sulfuric bacterium which has the ability to partially oxidize inorganic sulfur compounds. [2] [9]

Ecology

M. bipunctata lives in several different environments. Other than its communal living in moonmilk formations in certain caves, it was first isolated from a white mat formed in a waste-water. [1] [5] This microorganism is also found as a free-living microbe adapted to high-calcium and high alkaline, freshwater environments. [8] [11]

Biogeochemical significance

Macromonas bipunctata has an indirect connection to the discovery of several antibiotics within the moonmilk formations, but its greatest importance is in its chemical cycling of minerals such as sulfur and calcium in mesophilic environments. [3] This microbe plays a major, holistic role in cycling sulfur through the environment. [12] This bacteria has the ability to precipitate fine crystals of calcite as a byproduct of its activity through calcite inclusions within the cell of the microorganism. [3] [13] It also helps make magnesia crystals and the combination of the two provide the majority of the moonmilk formation that provides a mesophilic environment for several Archaea ad Bacterial phyla that live within the formations. [3] [13]

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References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 Dubininia, Galina A., Fred A. Rainey, and J. GiJs Kuenen (1924). Genus VII. Macromonas Utermohl and Koppe in Koppe 1924. pp. 721–724. ISBN   978-0-387-24145-6.{{cite book}}: |journal= ignored (help)CS1 maint: multiple names: authors list (link)
  2. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 Eprintsev, A. T., Falaleeva, M. I., Klimova, M. A., & Parfenova, N. V. (2006). "Isolation and properties of malate dehydrogenase from Meso-and thermophilic bacteria". Applied Biochemistry and Microbiology. 42 (3): 241–245. doi:10.1134/S0003683806030033. S2CID   5886877.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  3. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 La Rivière, J.W.M.; Schmidt, K. (2006). "Morphologically Conspicuous Sulfur-Oxidizing Eubacteria". In Dworkin, M.; Falkow, S.; Rosenberg, E.; Schleifer, K. H.; Stackebrandt, E. (eds.). The Prokaryotes. Vol. 7 (3rd ed.). Springer. pp. 941–954. doi:10.1007/0-387-30747-8_40. ISBN   0-387-30747-8.
  4. 1 2 3 4 5 Robertson, L. A., Muyzer, G. Kuenen, J. G. (2006). "Colorless Sulfur Bacteria". The Prokaryotes. Vol. 2. pp. 985–999. doi:10.1007/978-3-642-30141-4_78. ISBN   978-3-642-30140-7.{{cite book}}: CS1 maint: multiple names: authors list (link)
  5. 1 2 3 4 5 6 Reitschuler C, Lins P, Wagner AO, Illmer P (2014). "Cultivation of moonmilk-born non-extremophilic Thaum and Euryarchaeota in mixed culture". Anaerobe. 29: 73–79. doi:10.1016/j.anaerobe.2013.10.002. PMID   24513652.
  6. 1 2 3 4 5 Reinbacher, W. R. (1994). "Is it gnome, is it berg, is it mont, is it mond" (PDF). National Speleological Society . 56: 1–13.
  7. 1 2 3 4 Grabovich, M.Y., G.A. Dubinina, V.V. Churikova and A.E. Glushkov (1993). "Peculiarities of carbon metabolism in the colorless sulfur bacterium "Macromonas bipunctata"". Mikrobiologiya. 62: 421–428.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  8. 1 2 Suzuki, Shino; Kuenen, J. Gijs; Schipper, Kira; van der Velde, Suzanne; Ishii, Shun'ichi; Wu, Angela; Sorokin, Dimitry Y.; Tenney, Aaron; Meng, XianYing (2014-05-21). "Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site". Nature Communications. 5: 3900. Bibcode:2014NatCo...5.3900S. doi:10.1038/ncomms4900. PMC   4050266 . PMID   24845058.
  9. 1 2 3 4 5 6 7 8 Spring, Stefan, Michael Wagner, Peter Schumann, and Peter Kampfer (2005). ""Malikia Granosa" Gen. Nov., sp. nov., a novel polyhydroxyalkanoate- and polyphoosphate- accumulating bacterium isolated from activated sludge, and reclassification of "Pseudomonas spinosa" as "Malikia spiniosa" comb. nov". International Journal of Systematic and Evolutionary Microbiology. 55 (Pt 2): 621–629. doi: 10.1099/ijs.0.63356-0 . PMID   15774634.{{cite journal}}: CS1 maint: multiple names: authors list (link)
  10. 1 2 3 4 5 Matsuyama, Michiro (1991). "Enrichment of Macromonas Sp. Densely Populating an Upper Boundary of the H2S Layer of Lake Kaiike". Jpn. J. Limnol. 52 (3): 215–222. doi: 10.3739/rikusui.52.215 .
  11. ↑ Karavaiko, G. I.; Dubinina, G. A.; Kondrat'eva, T. F. (2006-10-01). "Lithotrophic microorganisms of the oxidative cycles of sulfur and iron". Microbiology. 75 (5): 512–545. doi:10.1134/S002626170605002X. ISSN   0026-2617. PMID   17091584. S2CID   35722643.
  12. ↑ Hinck, Susanne (2008). "Eco-physiological, chemotactic and taxonomic characterization of hypersaline Beggiatoa originating from microbial mats". Diss. Universität Bremen. CiteSeerX   10.1.1.427.6901 .
  13. 1 2 Rodríguez-Martínez, Marta (2011-01-01). "Mud Mounds". In Reitner, Joachim; Thiel, Volker (eds.). Encyclopedia of Geobiology. Encyclopedia of Earth Sciences Series. Springer Netherlands. pp. 667–675. doi:10.1007/978-1-4020-9212-1_153. ISBN   978-1-4020-9211-4.
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