A plasmid is a small, extrachromosomal DNA molecule within a cell that is physically separated from chromosomal DNA and can replicate independently. They are most commonly found as small circular, double-stranded DNA molecules in bacteria; however, plasmids are sometimes present in archaea and eukaryotic organisms. In nature, plasmids often carry genes that benefit the survival of the organism and confer selective advantage such as antibiotic resistance. While chromosomes are large and contain all the essential genetic information for living under normal conditions, plasmids are usually very small and contain only additional genes that may be useful in certain situations or conditions. Artificial plasmids are widely used as vectors in molecular cloning, serving to drive the replication of recombinant DNA sequences within host organisms. In the laboratory, plasmids may be introduced into a cell via transformation. Synthetic plasmids are available for procurement over the internet.
Streptomyces is the largest genus of Actinomycetota, and the type genus of the family Streptomycetaceae. Over 700 species of Streptomyces bacteria have been described. As with the other Actinomycetota, streptomycetes are gram-positive, and have very large genomes with high GC content. Found predominantly in soil and decaying vegetation, most streptomycetes produce spores, and are noted for their distinct "earthy" odor that results from production of a volatile metabolite, geosmin. Different strains of the same species may colonize very diverse environments.
Streptomyces clavuligerus is a species of Gram-positive bacterium notable for producing clavulanic acid.
Boromycin is a bacteriocidal polyether-macrolide antibiotic. It was initially isolated from the Streptomyces antibioticus, and is notable for being the first natural product found to contain the element boron. It is effective against most Gram-positive bacteria, but is ineffective against Gram-negative bacteria. Boromycin kills bacteria by negatively affecting the cytoplasmic membrane, resulting in the loss of potassium ions from the cell.
Pikromycin was studied by Brokmann and Hekel in 1951 and was the first antibiotic macrolide to be isolated. Pikromycin is synthesized through a type I polyketide synthase system in Streptomyces venezuelae, a species of Gram-positive bacterium in the genus Streptomyces. Pikromycin is derived from narbonolide, a 14-membered ring macrolide. Along with the narbonolide backbone, pikromycin includes a desosamine sugar and a hydroxyl group. Although Pikromycin is not a clinically useful antibiotic, it can be used as a raw material to synthesize antibiotic ketolide compounds such as ertythromycins and new epothilones.
Streptomyces nodosus is a bacterial species in the genus Streptomyces.
Streptomyces isolates have yielded the majority of human, animal, and agricultural antibiotics, as well as a number of fundamental chemotherapy medicines. Streptomyces is the largest antibiotic-producing genus of Actinomycetota, producing chemotherapy, antibacterial, antifungal, antiparasitic drugs, and immunosuppressants. Streptomyces isolates are typically initiated with the aerial hyphal formation from the mycelium.
Mervyn James Bibb FRS is an Emeritus Fellow at the John Innes Centre, Norwich, UK.
Actinoplanes friuliensis is a species of bacteria that produces lipopeptide antibiotics with peptidoglycan synthesis-inhibiting activity, called friulimicins.
Streptomyces glaucescens is a bacterium species from the genus of Streptomyces which has been isolated from soil. Streptomyces glaucescens produces tetracenomycin C, tetracenomycin D and tetracenomycin E.
Streptomyces kasugaensis is a bacterium species from the genus of Streptomyces which has been isolated from soil from the city Nara in Japan. Streptomyces kasugaensis produces kasugamycin and thiolutin.
Streptomyces laurentii is a bacterium species from the genus of Streptomyces which has been isolated from soil. Streptomyces laurentii produces thiostrepton.
Streptomyces niveus is a bacterium species from the genus of Streptomyces which has been isolated from soil in the United States. Streptomyces niveus produces the aminocoumarin antibiotic novobiocin and the compounds nivetetracyclate A and nivetetracyclate B.
Monoraphidium neglectum is a single-cell green alga of the family Selenastraceae. There is interest in using M. neglectum for the production of biofuels because it can accumulate large quantities of triacylglycerides (TAGs).
Bacillus methanolicus is a gram positive, thermophilic, methylotrophic member of the genus Bacillus. The most well characterized strain of the species, Bacillus methanolicus MGA3, was isolated from freshwater marsh soils, and grows rapidly in cultures heated to up to 60 °C using only methanol as a carbon source. The genome of B. methanolicus MGA3 was fully sequenced in 2014, revealing a 3,337,035 bp linear chromosome and two natural plasmids, pBM19 and pBM69.
The 'German Network for Bioinformatics Infrastructure – de.NBI' is a national, academic and non-profit infrastructure initiated by the Federal Ministry of Education and Research funding 2015-2021. The network provides bioinformatics services to users in life sciences research and biomedicine in Germany and Europe. The partners organize training events, courses and summer schools on tools, standards and compute services provided by de.NBI to assist researchers to more effectively exploit their data. From 2022, the network will be integrated into Forschungszentrum Jülich.
Streptomyces cinnabarigriseus is a bacterium species from the genus of Streptomyces.
Streptomyces davaonensis is a bacterium species from the genus of Streptomyces.
Borrelidin is an 18-membered polyketide macrolide derived from several Streptomyces species. First discovered in 1949 from Streptomyces rochei, Borrelidin shows antibacterial activity by acting as an inhibitor of threonyl-tRNA synthetase and features a nitrile moiety, a unique functionality in natural products., Borrelidin also exhibits potent angiogenesis inhibition, which was shown in a rat aorta matrix model. Other studies have been performed to show that low concentrations of borrelidin can suppress growth and induce apoptosis in malignant acute lymphoblastic leukemia cells. Borredlidin's antimalarial activity has also been shown in vitro and in vivo.
Streptomyces dysideae is a Gram-positive bacterium species from the genus of Streptomyces which has been isolated from the sponge Dysidea tupha from Rovinj.
