De novo domestication is a process where new species are genetically altered to meet human needs, such as agriculture or companionship. It is performed both by farmers and scientists, and can be done through traditional selective breeding or modern biotechnological methods. Targets for de novo domestication are often species that have never been under cultivation, but may also include wild relatives of already domesticated species.
De novo domestication refers to the process by which wild species are intentionally transformed into domesticated varieties. [1] The majority of domesticated species has been under domestication for millenia, with the first animal, the dog, having been under domestication for between 40,000-30,000 years, and the first plants since the start of the Neolithic Revolution, approximately 12,000 years ago. [2] [3] This initial process of domestication is hypothesized to have been a passive process, resulting from the subconcious selection of individuals performing better in agricultural contexts. [4] The scientific field of de novo domestication seeks to domesticate new species in an accelerated manner as opposed to over the course of thousands of years, as more domesticated species may provide an advantage to humanity, especially in agriculture. [1] Newly domesticated crop species may allow for alternatives to agricultural extensification in regions where yields are plateauing, make agricultural systems more resilient to climate change, and increase the sustainability of agriculture. [5] [6] [7]
It is important to note that de novo domestication does not only happen in a scientific context, but that the active domestication of new species is also performed by farmers, especially in the Global South. The collection and subsequent agricultural integration of traditionally wild-gathered food plants still happens to this day, and also constitutes de novo domestication. [8]
The terminology in the scientific field of domestication is improperly standardized, with the same term meaning different things to different scientists.[ citation needed ] This means that in some cases, de novo domestication is solely used for species that have no history of domestication, while in other cases, it can be used to describe further studies into semi-domesticated crops, which already have gone through (early) stages of domestication. [9]
The study of de novo domestication is most prevalent in plants, due to the implications new crops may bring to agriculture. There are two potential applications to the study of de novo domestication in plant sciences: the introduction of novel crops into agricultural systems and the redomestication of wild relatives of conventionally domesticated crops. [1]
The introduction of novel species into agricultural systems has the potential to radically alter their workings. One set of candidates for de novo domestication are perennial grains, cereal crops that can be harvested for multiple seasons after planting, as opposed to the annual grains that dominate agriculture. [10] The successful de novo domestication of a perennial grain would drastically reduce the need for yearly plowing, seedling protection and energy spent on reaching maturity, thus decreasing environmental impact and labour use. [7] The de novo domestication of tropical fruit trees is suggested to be able to help address 14 out of 17 of the Sustainable Development Goals set by the United Nations, either directly or indirectly. [11]
Another use for de novo domestication is the redomestication of wild relatives of domesticated crops. Through millennia under selection, most domesticated crops have undergone many genetic bottlenecks, drastically reducing their genetic diversity, and thus the ability to breed in new traits. [12] Meanwhile, these bottlenecked crops have been spread over the entire world, and are often grown in areas with climates that differ significantly from their genetic center of origin. [13] Redomestication of crop wild relatives may offer a solution to long-term, repetitive plant breeding projects seeking to integrate wild relative DNA from the center of origin into established hybrid cultivars. [1] [14] [15] This is especially relevant for crops that are reproductively incompatible with their wild relatives through processes such as polyploidization, such as hexaploid wheat, where integration of wild relative DNA through traditional breeding projects is difficult. [16]
The de novo domestication of animals has less scientific traction than that of plants, but one notable project is that undertaken by the Russian Institute of Cytology and Genetics to domesticate the fox. [17] This project aimed to study the theory of evolution and domestication syndrome by attempting the domestication of foxes, but was not primarily aimed at providing a new domesticated animal. [17] De novo domestication of fish, either in the ornamental aquarium trade or for the purposes of pisciculture is also ongoing. [18] [19]
Fungiculture, the cultivation of fungi such as mushrooms, has historically been less important than horticulture or animal husbandry in providing food for humans. Mushrooms were often gathered from the wild, but the knowledge to do so has largely disappeared in the Global North due to lifestyle changes and urbanization, prompting an increased need for mushroom cultivation. [20] As a result, many fungi were de novo domesticated, such as snow fungus (1866), oyster mushroom (1917), and milky white mushroom (1974). [21] A fungus that has been notoriously difficult to bring under cultivation is white truffle, and projects to de novo domesticate it are running. [22]
Rice is a cereal grain and in its domesticated form is the staple food of over half of the world's population, particularly in Asia and Africa. Rice is the seed of the grass species Oryza sativa —or, much less commonly, Oryza glaberrima. Asian rice was domesticated in China some 13,500 to 8,200 years ago; African rice was domesticated in Africa about 3,000 years ago. Rice has become commonplace in many cultures worldwide; in 2021, 787 million tons were produced, placing it fourth after sugarcane, maize, and wheat. Only some 8% of rice is traded internationally. China, India, and Indonesia are the largest consumers of rice. A substantial amount of the rice produced in developing nations is lost after harvest through factors such as poor transport and storage. Rice yields can be reduced by pests including insects, rodents, and birds, as well as by weeds, and by diseases such as rice blast. Traditional rice polycultures such as rice-duck farming, and modern integrated pest management seek to control damage from pests in a sustainable way.
The oat, sometimes called the common oat, is a species of cereal grain grown for its seed, which is known by the same name. Oats appear to have been domesticated as a secondary crop, as their seeds resembled those of other cereals closely enough for them to be included by early cultivators. Oats tolerate cold winters less well than cereals such as wheat, barley, and rye, but need less summer heat and more rain, making them important in areas such as Northwest Europe that have cool wet summers. They can tolerate low-nutrient and acid soils. Oats grow thickly and vigorously, allowing them to outcompete many weeds, and compared to other cereals are relatively free from diseases.
Quinoa is a flowering plant in the amaranth family. It is a herbaceous annual plant grown as a crop primarily for its edible seeds; the seeds are rich in protein, dietary fiber, B vitamins and dietary minerals in amounts greater than in many grains. Quinoa is not a grass but rather a pseudocereal botanically related to spinach and amaranth, and originated in the Andean region of northwestern South America. It was first used to feed livestock 5,200–7,000 years ago, and for human consumption 3,000–4,000 years ago in the Lake Titicaca basin of Peru and Bolivia.
Einkorn wheat can refer either to a wild species of wheat (Triticum) or to its domesticated form. The wild form is T. boeoticum, and the domesticated form is T. monococcum. Einkorn is a diploid species of hulled wheat, with tough glumes ('husks') that tightly enclose the grains. The cultivated form is similar to the wild, except that the ear stays intact when ripe and the seeds are larger. The domestic form is known as "petit épeautre" in French, "Einkorn" in German, "einkorn" or "littlespelt" in English, "piccolo farro" in Italian and "escanda menor" in Spanish. The name refers to the fact that each spikelet contains only one grain.
Emmer wheat or hulled wheat is a type of awned wheat. Emmer is a tetraploid. The domesticated types are Triticum turgidum subsp. dicoccum and T. t. conv. durum. The wild plant is called T. t. subsp. dicoccoides. The principal difference between the wild and the domestic forms is that the ripened seed head of the wild plant shatters and scatters the seed onto the ground, while in the domesticated emmer, the seed head remains intact, thus making it easier for people to harvest the grain.
Domestication is a multi-generational mutualistic relationship in which an animal species, such as humans or leafcutter ants, takes over control and care of another species, such as sheep or fungi, to obtain from them a steady supply of resources, such as meat, milk, or labor. The process is gradual and geographically diffuse, based on trial and error.
Cicer is a genus of the legume family, Fabaceae, and the only genus found in tribe Cicereae. It is included within the IRLC, and its native distribution is across the Middle East and Asia. Its best-known and only domesticated member is Cicer arietinum, the chickpea.
The cowpea is an annual herbaceous legume from the genus Vigna. Its tolerance for sandy soil and low rainfall have made it an important crop in the semiarid regions across Africa and Asia. It requires very few inputs, as the plant's root nodules are able to fix atmospheric nitrogen, making it a valuable crop for resource-poor farmers and well-suited to intercropping with other crops. The whole plant is used as forage for animals, with its use as cattle feed likely responsible for its name.
The founder crops or primary domesticates are a group of flowering plants that were domesticated by early farming communities in Southwest Asia and went on to form the basis of agricultural economies across Eurasia. As originally defined by Daniel Zohary and Maria Hopf, they consisted of three cereals, four pulses, and flax. Subsequent research has indicated that many other species could be considered founder crops. These species were amongst the first domesticated plants in the world.
Foxtail millet, scientific name Setaria italica, is an annual grass grown for human food. It is the second-most widely planted species of millet, and the most grown millet species in Asia. The oldest evidence of foxtail millet cultivation was found along the ancient course of the Yellow River in Cishan, China, carbon dated to be from around 8,000 years before present. Foxtail millet has also been grown in India since antiquity.
Agriculture began independently in different parts of the globe, and included a diverse range of taxa. At least eleven separate regions of the Old and New World were involved as independent centers of origin. The development of agriculture about 12,000 years ago changed the way humans lived. They switched from nomadic hunter-gatherer lifestyles to permanent settlements and farming.
Sorghum bicolor, commonly called sorghum and also known as great millet, broomcorn, guinea corn, durra, imphee, jowar, or milo, is a species in the grass genus Sorghum cultivated for its grain. The grain is used for food for humans; the plant is used for animal feed and ethanol production. Sorghum originated in Africa, and is now cultivated widely in tropical and subtropical regions.
Genetic pollution is a term for uncontrolled gene flow into wild populations. It is defined as "the dispersal of contaminated altered genes from genetically engineered organisms to natural organisms, esp. by cross-pollination", but has come to be used in some broader ways. It is related to the population genetics concept of gene flow, and genetic rescue, which is genetic material intentionally introduced to increase the fitness of a population. It is called genetic pollution when it negatively impacts the fitness of a population, such as through outbreeding depression and the introduction of unwanted phenotypes which can lead to extinction.
A crop wild relative (CWR) is a wild plant closely related to a domesticated plant. It may be a wild ancestor of the domesticated (cultivated) plant or another closely related taxon.
A Vavilov center or center of origin is a geographical area where a group of organisms, either domesticated or wild, first developed its distinctive properties. They are also considered centers of diversity. Centers of origin were first identified in 1924 by Nikolai Vavilov.
Thinopyrum intermedium, known commonly as intermediate wheatgrass, is a sod-forming perennial grass in the Triticeae tribe of Pooideae native to Europe and Western Asia. It is part of a group of plants commonly called wheatgrasses because of the similarity of their seed heads or ears to common wheat. However, wheatgrasses generally are perennial, while wheat is an annual. It has gained the Royal Horticultural Society's Award of Garden Merit as an ornamental.
A perennial grain is a grain crop that lives and remains productive for two or more years, rather than growing for only one season before harvest, like most grains and annual crops. While many fruit, nut and forage crops are long-lived perennial plants, all major grain crops presently used in large-scale agriculture are annuals or short-lived perennials grown as annuals. Scientists from several nations have argued that perennial versions of today's grain crops could be developed and that these perennial grains could make grain agriculture more sustainable.
Plant breeding is the science of changing the traits of plants in order to produce desired characteristics. It has been used to improve the quality of nutrition in products for humans and animals. The goals of plant breeding are to produce crop varieties that boast unique and superior traits for a variety of applications. The most frequently addressed agricultural traits are those related to biotic and abiotic stress tolerance, grain or biomass yield, end-use quality characteristics such as taste or the concentrations of specific biological molecules and ease of processing.
Plant breeding started with sedentary agriculture, particularly the domestication of the first agricultural plants, a practice which is estimated to date back 9,000 to 11,000 years. Initially, early human farmers selected food plants with particular desirable characteristics and used these as a seed source for subsequent generations, resulting in an accumulation of characteristics over time. In time however, experiments began with deliberate hybridization, the science and understanding of which was greatly enhanced by the work of Gregor Mendel. Mendel's work ultimately led to the new science of genetics. Modern plant breeding is applied genetics, but its scientific basis is broader, covering molecular biology, cytology, systematics, physiology, pathology, entomology, chemistry, and statistics (biometrics). It has also developed its own technology. Plant breeding efforts are divided into a number of different historical landmarks.
Silphium integrifolium is a species of flowering plant in the family Asteraceae. Its common names include rosinweed, whole-leaf rosinweed, entire-leaf rosinweed, prairie rosinweed, and silflower. It is native to eastern North America, including Ontario in Canada and the eastern and central United States as far west as New Mexico.
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