Glycoside hydrolase family 38

Last updated
Glycosyl hydrolases family 38 N-terminal domain
PDB 1hty EBI.jpg
golgi alpha-mannosidase ii
Identifiers
SymbolGlyco_hydro_38
Pfam PF01074
Pfam clan CL0158
InterPro IPR000602
SCOP2 1o7d / SCOPe / SUPFAM
CAZy GH38
Membranome 311
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Alpha mannosidase, middle domain
PDB 1hty EBI.jpg
golgi alpha-mannosidase ii
Identifiers
SymbolAlpha-mann_mid
Pfam PF09261
InterPro IPR015341
SCOP2 1o7d / SCOPe / SUPFAM
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Glycosyl hydrolases family 38 C-terminal domain
PDB 1hty EBI.jpg
golgi alpha-mannosidase ii
Identifiers
SymbolGlyco_hydro_38C
Pfam PF07748
Pfam clan CL0103
InterPro IPR011682
SCOP2 1o7d / SCOPe / SUPFAM
CAZy GH38
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

In molecular biology, glycoside hydrolase family 38 is a family of glycoside hydrolases.

Glycoside hydrolases EC 3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycoside hydrolases, based on sequence similarity, has led to the definition of >100 different families. [1] [2] [3] This classification is available on the CAZy web site, [4] [5] and also discussed at CAZypedia, an online encyclopedia of carbohydrate active enzymes. [6] [7]

Glycoside hydrolase family 38 CAZY GH_38 comprises enzymes with only one known activity; alpha-mannosidase (EC 3.2.1.24) (EC 3.2.1.114).

Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyzes the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.

A domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase. [8]

Related Research Articles

<span class="mw-page-title-main">Glycoside hydrolase family 2</span>

In molecular biology, Glycoside hydrolase family 2 is a family of glycoside hydrolases EC 3.2.1., which are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycoside hydrolases, based on sequence similarity, has led to the definition of >100 different families. This classification is available on the CAZy web site, and also discussed at CAZypedia, an online encyclopedia of carbohydrate active enzymes.

<span class="mw-page-title-main">Glycoside hydrolase family 20</span>

In molecular biology, glycoside hydrolase family 20 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 3</span>

In molecular biology, glycoside hydrolase family 3 is a family of glycoside hydrolases. Glycoside hydrolases EC 3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycoside hydrolases, based on sequence similarity, has led to the definition of over 100 different families. This classification is available on the CAZy web site, and also discussed at CAZypedia, an online encyclopedia of carbohydrate active enzymes.

<span class="mw-page-title-main">Glycoside hydrolase family 31</span>

In molecular biology, glycoside hydrolase family 31 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 32</span> Family of glycoside hydrolases

In molecular biology, glycoside hydrolase family 32 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 35</span>

In molecular biology, glycoside hydrolase family 35 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 39</span> Family of glycoside hydrolases

In molecular biology, glycoside hydrolase family 39 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 42</span>

In molecular biology, glycoside hydrolase family 42 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 43 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 49</span>

In molecular biology, glycoside hydrolase family 49 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 62 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 65</span>

In molecular biology, glycoside hydrolase family 65 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 68</span>

In molecular biology, glycoside hydrolase family 68 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 70 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 76 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 77</span>

In molecular biology, glycoside hydrolase family 77 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 92 is a family of glycoside hydrolases.

<span class="mw-page-title-main">Glycoside hydrolase family 29</span>

In molecular biology, glycoside hydrolase family 29 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 37 is a family of glycoside hydrolases.

In molecular biology, glycoside hydrolase family 89 is a family of glycoside hydrolases.

References

  1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G (July 1995). "Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases". Proceedings of the National Academy of Sciences of the United States of America. 92 (15): 7090–4. Bibcode:1995PNAS...92.7090H. doi: 10.1073/pnas.92.15.7090 . PMC   41477 . PMID   7624375.
  2. Davies G, Henrissat B (September 1995). "Structures and mechanisms of glycosyl hydrolases". Structure. 3 (9): 853–9. doi: 10.1016/S0969-2126(01)00220-9 . PMID   8535779.
  3. Henrissat B, Bairoch A (June 1996). "Updating the sequence-based classification of glycosyl hydrolases". The Biochemical Journal. 316 (Pt 2): 695–6. doi:10.1042/bj3160695. PMC   1217404 . PMID   8687420.
  4. "Home". CAZy.org. Retrieved 2018-03-06.
  5. Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B (January 2014). "The carbohydrate-active enzymes database (CAZy) in 2013". Nucleic Acids Research. 42 (Database issue): D490-5. doi:10.1093/nar/gkt1178. PMC   3965031 . PMID   24270786.
  6. "Glycoside Hydrolase Family 38". CAZypedia.org. Retrieved 2018-03-06.
  7. CAZypedia Consortium (December 2018). "Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes" (PDF). Glycobiology. 28 (1): 3–8. doi: 10.1093/glycob/cwx089 . PMID   29040563.
  8. Heikinheimo P, Helland R, Leiros HK, Leiros I, Karlsen S, Evjen G, Ravelli R, Schoehn G, Ruigrok R, Tollersrud OK, McSweeney S, Hough E (March 2003). "The structure of bovine lysosomal alpha-mannosidase suggests a novel mechanism for low-pH activation". Journal of Molecular Biology. 327 (3): 631–44. doi:10.1016/S0022-2836(03)00172-4. PMID   12634058.
This article incorporates text from the public domain Pfam and InterPro: IPR000602
This article incorporates text from the public domain Pfam and InterPro: IPR011682
This article incorporates text from the public domain Pfam and InterPro: IPR015341