KHDRBS3

KHDRBS3
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 5ELR, 5ELS, 5EMO, 5ELT, 5EL3
Identifiers
Aliases	KHDRBS3 , Etle, SALP, SLM-2, SLM2, T-STAR, TSTAR, etoile, KH domain containing, RNA binding, signal transduction associated 3, KH RNA binding domain containing, signal transduction associated 3
External IDs	OMIM: 610421; MGI: 1313312; HomoloGene: 4780; GeneCards: KHDRBS3; OMA:KHDRBS3 - orthologs
Gene location (Mouse) Chr. Chromosome 15 (mouse) [1] Band 15 D3|15 30.36 cM Start 68,800,269 bp [1] End 68,973,060 bp [1]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in middle temporal gyrus prefrontal cortex Brodmann area 9 secondary oocyte Brodmann area 23 sperm Brodmann area 46 cingulate gyrus orbitofrontal cortex amygdala Top expressed in interventricular septum neural layer of retina dentate gyrus of hippocampal formation granule cell visual cortex primary visual cortex superior frontal gyrus hippocampus proper ventricular zone prefrontal cortex primary motor cortex More reference expression data BioGPS More reference expression data
Gene ontology Molecular function SH3 domain binding protein binding RNA binding nucleic acid binding protein domain specific binding identical protein binding Cellular component nucleus nucleoplasm Biological process regulation of transcription, DNA-templated transcription, DNA-templated mRNA processing regulation of mRNA splicing, via spliceosome protein complex oligomerization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10656 13992 Ensembl n/a ENSMUSG00000022332 UniProt O75525 Q9R226 RefSeq (mRNA) NM_006558 NM_010158 RefSeq (protein) NP_006549 NP_034288 Location (UCSC) n/a Chr 15: 68.8 – 68.97 Mb PubMed search [2] [3]
Wikidata
View/Edit Human View/Edit Mouse

KH domain-containing, RNA-binding, signal transduction-associated protein 3 is a protein that in humans is encoded by the KHDRBS3 gene. ^{[4] [5] [6]}

Interactions

KHDRBS3 has been shown to interact with SIAH1. ^{[7] [8]}

KHDRBS3 interacts with splicing protein Sam68 and oncogene metadherin in prostate cancer cells. ^[9]

Clinical significance

KHDRBS3 (T-STAR) expression has been shown to be increased in prostate cancer tissue compared to the surrounding benign tissue. ^[9] Expression of KHDRBS3 correlates with mpMRI signal measured through Likert score a system similar to PI-RADS. ^[9] While still under debate, mpMRI signal correlates with higher Gleason grade and tumour size, in addition to histopathological features associated with clinically aggressive prostate cancer. ^{[10] [11]} Expression of KHDRBS3 was increased in the failing human myocardium of heart failure patients, here KHDRBS3 protein interacted with several important mRNAs coding for sarcomere components, such as actin gamma 1 ( ACTG1 ), myosin light chain 2 ( MYL2 ), ryanodine receptor 2 ( RYR2 ), troponin I3 ( TNNI3 ), troponin T2 ( TNNT2 ), tropomyosin 1 ( TPM1 ), tropomyosin 2 ( TPM2 ), and titin ( TTN). ^[12]

In prostate cancer cell lines KHDRBS3 appears to be androgen regulated, with a reduction in mRNA expression occurring following addition of synthetic androgen R1881 to cells. ^[9]

Function

KHDRBS3 regulates the alternative mRNA splicing of the sacromere protein titin (TTN), leading to intron retention. Overexpression of KHDRBS3 in induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) increased Ca²⁺ transient amplitude and resulted in an increase of F_max. ^[12]

References

1. GRCm38: Ensembl release 89: ENSMUSG00000022332 – Ensembl, May 2017
2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
3. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. Venables JP, Vernet C, Chew SL, Elliott DJ, Cowmeadow RB, Wu J, et al. (June 1999). "T-STAR/ETOILE: a novel relative of SAM68 that interacts with an RNA-binding protein implicated in spermatogenesis". Human Molecular Genetics. 8 (6): 959–69. doi: 10.1093/hmg/8.6.959 . PMID   10332027.
5. Lee J, Burr JG (November 1999). "Salpalpha and Salpbeta, growth-arresting homologs of Sam68". Gene. 240 (1): 133–47. doi:10.1016/S0378-1119(99)00421-7. PMID   10564820.
6. "Entrez Gene: KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3".
7. Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
8. Venables JP, Dalgliesh C, Paronetto MP, Skitt L, Thornton JK, Saunders PT, et al. (July 2004). "SIAH1 targets the alternative splicing factor T-STAR for degradation by the proteasome". Human Molecular Genetics. 13 (14): 1525–34. doi:10.1093/hmg/ddh165. PMID   15163637.
9. Luxton HJ, Simpson BS, Mills IG, Brindle NR, Ahmed Z, Stavrinides V, et al. (August 2019). "The Oncogene Metadherin Interacts with the Known Splicing Proteins YTHDC1, Sam68 and T-STAR and Plays a Novel Role in Alternative mRNA Splicing". Cancers. 11 (9): 1233. doi: 10.3390/cancers11091233 . PMC   6770463 . PMID   31450747.
10. Norris JM, Carmona Echeverria LM, Bott SR, Brown LC, Burns-Cox N, Dudderidge T, et al. (May 2020). "What Type of Prostate Cancer Is Systematically Overlooked by Multiparametric Magnetic Resonance Imaging? An Analysis from the PROMIS Cohort". European Urology. 78 (2): 163–170. doi: 10.1016/j.eururo.2020.04.029 . PMC   7397509 . PMID   32370911.
11. Norris JM, Carmona Echeverria LM, Simpson BS, Allen C, Ball R, Freeman A, et al. (April 2020). "Prostate cancer visibility on multiparametric magnetic resonance imaging: high Gleason grade and increased tumour volume are not the only important histopathological features". BJU International. 126 (2): 237–239. doi: 10.1111/bju.15085 . PMID   32319152.
12. Boeckel, Jes-Niels; Möbius-Winkler, Maximilian; Müller, Marion; Rebs, Sabine; Eger, Nicole; Schoppe, Laura; Tappu, Rewati; Kokot, Karoline E.; Kneuer, Jasmin M.; Gaul, Susanne; Bordalo, Diana M. (2021-07-15). "SLM2 Is A Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy". Genomics, Proteomics & Bioinformatics. 20 (1): 129–146. doi: 10.1016/j.gpb.2021.01.006 . ISSN   1672-0229. PMC   9510876 . PMID   34273561.

Further reading

• Di Fruscio M, Chen T, Richard S (March 1999). "Characterization of Sam68-like mammalian proteins SLM-1 and SLM-2: SLM-1 is a Src substrate during mitosis". Proceedings of the National Academy of Sciences of the United States of America. 96 (6): 2710–5. Bibcode:1999PNAS...96.2710D. doi: 10.1073/pnas.96.6.2710 . PMC   15834 . PMID   10077576.
• Venables JP, Elliott DJ, Makarova OV, Makarov EM, Cooke HJ, Eperon IC (March 2000). "RBMY, a probable human spermatogenesis factor, and other hnRNP G proteins interact with Tra2beta and affect splicing". Human Molecular Genetics. 9 (5): 685–94. doi: 10.1093/hmg/9.5.685 . PMID   10749975.
• Stoss O, Olbrich M, Hartmann AM, Konig H, Memmott J, Andreadis A, Stamm S (March 2001). "The STAR/GSG family protein rSLM-2 regulates the selection of alternative splice sites". The Journal of Biological Chemistry. 276 (12): 8665–73. doi: 10.1074/jbc.M006851200 . PMID   11118435.
• Sugimoto Y, Morita R, Amano K, Shah PU, Pascual-Castroviejo I, Khan S, et al. (August 2001). "T-STAR gene: fine mapping in the candidate region for childhood absence epilepsy on 8q24 and mutational analysis in patients". Epilepsy Research. 46 (2): 139–44. doi:10.1016/S0920-1211(01)00274-1. PMID   11463515. S2CID   28713407.
• Kool J, van Zaane W, van der Eb AJ, Terleth C (November 2001). "Down-regulation of T-STAR, a growth inhibitory protein, after SV40-mediated immortalization". Cell Growth & Differentiation. 12 (11): 535–41. PMID   11714634.
• Reddy TR, Suhasini M, Xu W, Yeh LY, Yang JP, Wu J, et al. (February 2002). "A role for KH domain proteins (Sam68-like mammalian proteins and quaking proteins) in the post-transcriptional regulation of HIV replication". The Journal of Biological Chemistry. 277 (8): 5778–84. doi: 10.1074/jbc.M106836200 . PMID   11741900.
• Côté J, Boisvert FM, Boulanger MC, Bedford MT, Richard S (January 2003). "Sam68 RNA binding protein is an in vivo substrate for protein arginine N-methyltransferase 1". Molecular Biology of the Cell. 14 (1): 274–87. doi:10.1091/mbc.E02-08-0484. PMC   140244 . PMID   12529443.
• Venables JP, Dalgliesh C, Paronetto MP, Skitt L, Thornton JK, Saunders PT, et al. (July 2004). "SIAH1 targets the alternative splicing factor T-STAR for degradation by the proteasome". Human Molecular Genetics. 13 (14): 1525–34. doi:10.1093/hmg/ddh165. PMID   15163637.
• Cohen CD, Doran PP, Blattner SM, Merkle M, Wang GQ, Schmid H, et al. (July 2005). "Sam68-like mammalian protein 2, identified by digital differential display as expressed by podocytes, is induced in proteinuria and involved in splice site selection of vascular endothelial growth factor". Journal of the American Society of Nephrology. 16 (7): 1958–65. doi: 10.1681/ASN.2005020204 . PMID   15901763.
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Zhang L, Guo L, Peng Y, Chen B (July 2006). "Expression of T-STAR gene is associated with regulation of telomerase activity in human colon cancer cell line HCT-116". World Journal of Gastroenterology. 12 (25): 4056–60. doi: 10.3748/wjg.v12.i25.4056 . PMC   4087721 . PMID   16810759.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.