Nucleoporin 88

Last updated
NUP88
Identifiers
Aliases NUP88 , nucleoporin 88, FADS4
External IDs OMIM: 602552 MGI: 104900 HomoloGene: 1901 GeneCards: NUP88
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_002532
NM_001320653

NM_001083331
NM_001276406
NM_172394

RefSeq (protein)

NP_001307582
NP_002523

NP_001076800
NP_001263335
NP_765982

Location (UCSC) Chr 17: 5.36 – 5.42 Mb Chr 11: 70.83 – 70.86 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Nucleoporin 88 (Nup88) is a protein that in humans is encoded by the NUP88 gene. [5] [6]

Contents

Function

The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins, a family of 50 to 100 proteins, are the main components of the nuclear pore complex in eukaryotic cells. The protein encoded by this gene belongs to the nucleoporin family and is associated with the oncogenic nucleoporin CAN/Nup214 in a dynamic subcomplex. This protein is also overexpressed in a large number of malignant neoplasms and precancerous dysplasias. [6]

Interactions

NUP88 has been shown to interact with NUP98. [7]

Related Research Articles

<span class="mw-page-title-main">Nuclear pore</span>

A nuclear pore is a part of a large complex of proteins, known as a nuclear pore complex that spans the nuclear envelope, which is the double membrane surrounding the eukaryotic cell nucleus. There are approximately 1,000 nuclear pore complexes (NPCs) in the nuclear envelope of a vertebrate cell, but this number varies depending on cell type and the stage in the life cycle. The human nuclear pore complex (hNPC) is a 110 megadalton (MDa) structure. The proteins that make up the nuclear pore complex are known as nucleoporins; each NPC contains at least 456 individual protein molecules and is composed of 34 distinct nucleoporin proteins. About half of the nucleoporins typically contain solenoid protein domains—either an alpha solenoid or a beta-propeller fold, or in some cases both as separate structural domains. The other half show structural characteristics typical of "natively unfolded" or intrinsically disordered proteins, i.e. they are highly flexible proteins that lack ordered tertiary structure. These disordered proteins are the FG nucleoporins, so called because their amino-acid sequence contains many phenylalanine—glycine repeats.

<span class="mw-page-title-main">Nucleoporin 62</span> Protein-coding gene in the species Homo sapiens

Nucleoporin p62 (p62) is a protein complex associated with the nuclear envelope. The p62 protein remains associated with the nuclear pore complex-lamina fraction. p62 is synthesized as a soluble cytoplasmic precursor of 61 kDa followed by modification that involve addition of N-acetylglucosamine residues, followed by association with other complex proteins.

<span class="mw-page-title-main">Nucleoporin</span> Family of proteins that form the nuclear pore complex

Nucleoporins are a family of proteins which are the constituent building blocks of the nuclear pore complex (NPC). The nuclear pore complex is a massive structure embedded in the nuclear envelope at sites where the inner and outer nuclear membranes fuse, forming a gateway that regulates the flow of macromolecules between the cell nucleus and the cytoplasm. Nuclear pores enable the passive and facilitated transport of molecules across the nuclear envelope. Nucleoporins, a family of around 30 proteins, are the main components of the nuclear pore complex in eukaryotic cells. Nucleoporin 62 is the most abundant member of this family. Nucleoporins are able to transport molecules across the nuclear envelope at a very high rate. A single NPC is able to transport 60,000 protein molecules across the nuclear envelope every minute.

<span class="mw-page-title-main">NUP98</span>

Nuclear pore complex protein Nup98-Nup96 is a protein that in humans is encoded by the NUP98 gene.

<span class="mw-page-title-main">Nucleoporin 153</span>

Nucleoporin 153 (Nup153) is a protein which in humans is encoded by the NUP153 gene. It is an essential component of the basket of nuclear pore complexes (NPCs) in vertebrates, and required for the anchoring of NPCs. It also acts as the docking site of an importing karyopherin. On the cytoplasmic side of the NPC, Nup358 fulfills an analogous role.

<span class="mw-page-title-main">Nucleoporin 214</span> Protein-coding gene in the species Homo sapiens

Nucleoporin 214 (Nup2014) is a protein that in humans is encoded by the NUP214 gene.

<span class="mw-page-title-main">RAE1</span>

mRNA export factor is a protein that in humans is encoded by the RAE1 gene.

<span class="mw-page-title-main">Nucleoporin 50</span>

Nucleoporin 50 (Nup50) is a protein that in humans is encoded by the NUP50 gene.

<span class="mw-page-title-main">Nucleoporin 107</span>

Nucleoporin 107 (Nup107) is a protein that in humans is encoded by the NUP107 gene.

<span class="mw-page-title-main">Nucleoporin 54</span>

Nucleoporin 54 (Nup54) is a protein that in humans is encoded by the NUP54 gene.

<span class="mw-page-title-main">Nucleoporin 133</span> Protein-coding gene in the species Homo sapiens

Nucleoporin 133 (Nup133) is a protein that in humans is encoded by the NUP133 gene.

<span class="mw-page-title-main">Nucleoporin 160</span>

Nucleoporin 160 (Nup160) is a protein that in humans is encoded by the NUP160 gene.

<span class="mw-page-title-main">Nucleoporin 155</span>

Nucleoporin 155 (Nup155) is a protein that in humans is encoded by the NUP155 gene.

<span class="mw-page-title-main">Nucleoporin 43</span>

Nucleoporin 43 (Nup43) is a protein that in humans is encoded by the NUP43 gene.

<span class="mw-page-title-main">Nucleoporin 93</span>

Nucleoporin 93 (Nup93) is a protein that in humans is encoded by the NUP93 gene.

<span class="mw-page-title-main">Nucleoporin 35</span>

Nucleoporin 35 (Nup35) is a protein that in humans is encoded by the NUP35 gene.

Nucleoporin 37 (Nup37) is a protein that in humans is encoded by the NUP37 gene.

<span class="mw-page-title-main">Nucleoporin 188</span> Protein-coding gene in the species Homo sapiens

Nucleoporin 188 (Nup188) is a protein that in humans is encoded by the NUP188 gene.

<span class="mw-page-title-main">Nucleoporin 205</span>

Nucleoporin 205 (Nup205) is a protein that in humans is encoded by the NUP205 gene.

Gene gating is a phenomenon by which transcriptionally active genes are brought next to nuclear pore complexes (NPCs) so that nascent transcripts can quickly form mature mRNA associated with export factors. Gene gating was first hypothesised by Günter Blobel in 1985. It has been shown to occur in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster as well as mammalian model systems.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000108559 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000040667 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Fornerod M, van Deursen J, van Baal S, Reynolds A, Davis D, Murti KG, Fransen J, Grosveld G (Mar 1997). "The human homologue of yeast CRM1 is in a dynamic subcomplex with CAN/Nup214 and a novel nuclear pore component Nup88". EMBO J. 16 (4): 807–16. doi:10.1093/emboj/16.4.807. PMC   1169681 . PMID   9049309.
  6. 1 2 "Entrez Gene: NUP88 nucleoporin 88kDa".
  7. Griffis ER, Xu S, Powers MA (Feb 2003). "Nup98 localizes to both nuclear and cytoplasmic sides of the nuclear pore and binds to two distinct nucleoporin subcomplexes". Mol. Biol. Cell. 14 (2): 600–10. doi:10.1091/mbc.E02-09-0582. PMC   149995 . PMID   12589057.

Further reading