RIPK1

Last updated

RIPK1
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases RIPK1 , RIP, RIP1, RIP-1, receptor interacting serine/threonine kinase 1, IMD57, AIEFL
External IDs OMIM: 603453; MGI: 108212; HomoloGene: 2820; GeneCards: RIPK1; OMA:RIPK1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_009068
NM_001359997

RefSeq (protein)

NP_033094
NP_001346926

Location (UCSC) Chr 6: 3.06 – 3.12 Mb Chr 13: 34.19 – 34.22 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Receptor-interacting serine/threonine-protein kinase 1 (RIPK1) functions in a variety of cellular pathways related to both cell survival and death. In terms of cell death, RIPK1 plays a role in apoptosis, necroptosis, and PANoptosis Some of the cell survival pathways RIPK1 participates in include NF-κB, Akt, and JNK. [5]

Contents

RIPK1 is an enzyme that in humans is encoded by the RIPK1 gene, which is located on chromosome 6. [6] [7] [8] This protein belongs to the Receptor Interacting Protein (RIP) kinases family, which consists of 7 members, RIPK1 being the first member of the family. [9]

Structure

RIPK1 protein is composed of 671 amino acids, and has a molecular weight of about 76 kDa. It contains a serine/threonine kinase domain (KD) in the 300 aa N-Terminus, a death domain (DD) in the 112 aa C-Terminus, and a central region between the KD and DD called intermediate domain (ID).

.

Structural domains of RIPK1 Structural domains of RIPK1.jpg
Structural domains of RIPK1

Function

Although, RIPK1 has been primarily studied in the context of TNFR signaling, RIPK1 is also activated in response to diverse stimuli. [13]

The kinase domain, while important for necroptotic (programmed necrotic) functions, appears dispensable for pro-survival roles. Kinase activity of RIPK1 is also required for RIPK1-dependent apoptosis in conditions of IAP1/2 depletion, RIPK3 depletion or MLKL depletion. [14] [15] Also, proteolytic processing of RIPK1, through both caspase-dependent and -independent mechanisms, triggers lethality that is dependent on the generation of one or more specific C-terminal cleavage product(s) of RIPk1 upon stress.

Role in cell survival

It has been shown that cell survival can be regulated through different RIPK1-mediated pathways that ultimately result in the expression of NF-kB, a protein complex known to regulate transcription of DNA and thus, related to survival processes. [16]

Receptor-mediated signalling

The most well-known pathway of NF-kB activation is that mediated by the death receptor TNFR1, which starts as in the necroptosis pathway with the assembly of TRADD, RIPK1, TRAF2 and clAP1 in the lipid rafts of the plasma membrane (complex I is formed). In survival signalling, RIPK1 is then polyubiquitinated, allowing NEMO (Necrosis Factor – kappa – B essential modulator) to bind to the IkB kinase or IKK complex. [17] To activate IKK, TAB2 and TAB3 adaptor proteins recruit TAK1 or MEKK3, which phosphorylate the complex. This results in the phosphorylation of the NF-kB inhibitors by the activated IKK complex, which in turn triggers their polyubiquitination and posterior degradation in the 26S proteasome.

As a result, NF-kB can now migrate to the nucleus where it will control DNA transcription by binding itself to the promoters of specific genes. Some of those genes are thought to have anti-apoptotic properties as well as to promote proteasomal degradation of RIPK1, resulting in a self-regulatory cycle.

While being in complex I, RIPK1 has also been proved to play a role in the activation of MAP (mitogen-activated protein) kinases such as JNK, ERK and p38. In particular, JNK can be found in both cell death and survival pathways, with its role in the cell death process being suppressed by activated NF-kB. [5]

Cell survival signalling can also be mediated by TLR-3 (toll-like receptors) and TLR-4. In here, RIPK1 is recruited to the receptors where it is phosphorylated and polyubiquitinated. This results in the recruit of the IKK complex activating proteins (TAK1, TAB1 and TAB2) so eventually NF-kB can now too migrate to the nucleus. RIPK2 is involved in this TLR-mediated signalling, which suggests that there might be a regulation of cell survival or death (the two possible outcomes) through the mutual interaction between the two RIPK family members. [5] [9]

Genotoxic stress-mediated activation

Upon DNA damage, RIPK1 mediates another NF-kB activation pathway where two simultaneous and exclusive processes occur. A pro-apoptotic complex is created while RIPK1 also mediates the interaction between PIDD, NEMO and IKK subunits that will eventually result in the IKK complex activation after interaction with ATM kinase (a DNA double-strand breaks stimulated protein). The interaction between RIPK1 and PIDD through their death domains is thought to promote cell survival to neutralize this pro-apoptotic complex. [9]

Others

It has been observed that RIPK1 may also interact with IGF-1R (insulin-like growth factor 1 receptor) to activate JNK (c-Jun N-terminal Kinases), it may be related to epidermal growth factor receptor signalling and it is largely expressed in glioblastoma cells, suggesting that RIPK1 is indeed involved in cell survival and proliferation processes. [5]

Role in cell death

Necroptosis

Necroptosis is a programmed form of necrosis which starts with the assembly of the TNF (tumor necrosis factor) ligand to its membrane receptor, the TNFR (tumor necrosis factor receptor). Once activated, the intracellular domain of TNFR starts the recruitment of the adaptor TNFR-1-associated death domain protein TRADD, which recruits RIPK1 and two ubiquitin ligases: TRAF2 and clAP1. This complex is called the TNFR-1 complex I. [18]

Complex-I is then modified by the IAPs (Inhibitor of Apoptosis Proteins) and the LUBAC (Linear Ubiquitination Assembly Complex), which generate linear ubiquitin linkages. The ubiquitination of complex-I leads to the activation of NF-κB, which in turn activates the expression of FLICE-like inhibitory protein FLIP. FLIP then binds to caspase-8, forming a caspase-8 FLIP heterodimer in the cytosol that disrupts the activity of caspase-8 and prevents caspase-8 mediated apoptosis from taking place. [19]

The assembly of complex II-b then starts in the cytosol. This new complex contains the caspase-8 FLIP heterodimer as well as RIPK1 and RIPK3. Caspase inhibition within this complex allows RIPK1 and RIPK3 to autotransphosphorylate each other, forming another complex called the necrosome. [20] The necrosome starts recruiting MLKL (Mixed Lineage Kinase Domain Like protein), which is phosphorylated by RIPK3 and immediately translocates to lipid rafts inside the plasma membrane. This leads to the formation of pores in the membrane, allowing the sodium influx to increase -and consequently the osmotic pressure-, which eventually causes cell membrane rupture. [20]

Apoptosis

The apoptotic extrinsic pathway starts with the formation of the TNFR-1 complex-I, which contains TRADD, RIPK1, and two ubiquitin ligases:TRAF2 and clAP1. [21] [18]

Unlike the necroptotic pathway, this pathway doesn't include the inhibition of caspase-8. Thus, in absence of NF-κB function, FLIP is not produced, and therefore active caspase-8 assembles with FADD, RIPK1 and RIPK3 in the cytosol, forming what is known as complex IIa. [20]

Caspase-8 activates Bid, a protein that binds to the mitochondrial membrane, allowing the release of intermembrane mitochondrial molecules such as cytochrome c. Cytochrome c then assembles with Apaf 1 and ATP molecules, forming a complex called apoptosome. The activation of caspase 3 and 9 by the apoptosome starts a proteolitic cascade that eventually leads to the degradation of organelles and proteins, and the fragmentation of the DNA, inducing apoptotic cell death.

PANoptosis

PANoptosis is a prominent innate immune, inflammatory, and lytic cell death pathway initiated by innate immune sensors and driven by caspases and receptor-interacting protein kinases (RIPKs) through PANoptosomes. [22] [23] PANoptosomes are multi-protein complexes assembled by germline-encoded pattern-recognition receptor(s) (PRRs) (innate immune sensor(s)) in response to pathogens, including bacterial, viral, and fungal infections, as well as pathogen-associated molecular patterns, damage-associated molecular patterns, cytokines, and homeostatic changes during infections, inflammatory conditions, and cancer. [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] RIPK1 has been identified as a component of multiple PANoptosomes, including the ZBP1-PANoptosome and the AIM2-PANoptosome. Additionally, RIPK1 also drives the formation of the RIPK1-PANoptosome to induce PANoptosis in response to TAK1 inhibition. [38] [39] [40] TAK1 is a central regulator in cell death that prevents spontaneous NLRP3 inflammasome activation and PANoptosis in a RIPK1-dependent manner. [38] [39] [40] Additionally, the Gram-negative bacterium Yersinia produces YopJ, which inhibits TAK1, and Yersinia infection can trigger the activation of the RIPK1-PANoptosome. [40]

Neurodegenerative diseases

Alzheimer's disease

Patients with Alzheimer's disease, a neurodegenerative disease characterized by a cognitive deterioration and a behavioural disorder, experience a chronic brain inflammation which leads to the atrophy of several brain regions.

A sign of this inflammation is an increased number of microglia, a type of glial cells located in the brain and the spinal cord. RIPK1 is known to appear in larger quantities in brains from those affected with AD. [41] This enzyme regulates not only necroptosis, but cell inflammation as well, and as a result it is involved in the regulation of microglial functions, specially those associated with the appearance and development of neurodegenerative diseases such as AD. [41]

Amyotrophic Lateral Sclerosis

Amyotrophic Lateral Sclerosis (ALS) is characterized by the degeneration of motor neurons which leads to the progressive loss of mobility. Consequently, patients are unable to do any physical activity due to the atrophy of their muscles. [42]

The optineurin gene (OPTN) and its mutation are known to be involved in ALS. When the organism loses OPTN, the dysmyelination of axons and its degeneration start. The degeneration of the axons is produced by several components from the Central Nervous System (CNS) including RIPK1 and another enzyme from the Receptor Interacting Protein kinases family, RIPK3, as well as other proteins such as MLKL. [43]

Once RIPK1, RIPK3 and MLKL have contributed to the dysmyelination and the consequent degeneration of axons, the nerve impulse can't to go from one neuron to another due to the lack of myelin, which leads to the consequent mobility problems as the nerve impulse does not arrive to its final destination. [44]

Multiple sclerosis

RIPK1 plays a role in the activation of multiple sclerosis and its progression driving neuroinflammatory signaling in microglia And astrocytes. SAR443820 is an investigational RIPK1 inhibitor that may be useful in the management of multiple sclerosis. [45]

Autoinflamatory disease

An autoinflammatory disease characterised by recurrent fevers and lymphadenopathy has been associated with mutations in this gene. [46]

CRIA syndrome (Cleavage-resistant RIPK1-induced autoinflammatory syndrome) is a disorder caused by specific mutations of the RIPK1 gene. Symptoms include "fevers, swollen lymph nodes, severe abdominal pain, gastrointestinal problems, headaches and, in some cases, abnormally enlarged spleen and liver". [47]

Interactions

RIPK1 has been shown to interact with:

Related Research Articles

<span class="mw-page-title-main">Tumor necrosis factor</span> Immune system messenger protein which induces inflammation

Tumor necrosis factor (TNF), formerly known as TNF-α, is a chemical messenger produced by the immune system that induces inflammation. TNF is produced primarily by activated macrophages, and induces inflammation by binding to its receptors on other cells. It is a member of the tumor necrosis factor superfamily, a family of transmembrane proteins that are cytokines, chemical messengers of the immune system. Excessive production of TNF plays a critical role in several inflammatory diseases, and TNF-blocking drugs are often employed to treat these diseases.

<span class="mw-page-title-main">Low-affinity nerve growth factor receptor</span> Human protein-coding gene

The p75 neurotrophin receptor (p75NTR) was first identified in 1973 as the low-affinity nerve growth factor receptor (LNGFR) before discovery that p75NTR bound other neurotrophins equally well as nerve growth factor. p75NTR is a neurotrophic factor receptor. Neurotrophic factor receptors bind Neurotrophins including Nerve growth factor, Neurotrophin-3, Brain-derived neurotrophic factor, and Neurotrophin-4. All neurotrophins bind to p75NTR. This also includes the immature pro-neurotrophin forms. Neurotrophic factor receptors, including p75NTR, are responsible for ensuring a proper density to target ratio of developing neurons, refining broader maps in development into precise connections. p75NTR is involved in pathways that promote neuronal survival and neuronal death.

<span class="mw-page-title-main">FADD</span> Human protein and coding gene

FAS-associated death domain protein, also called MORT1, is encoded by the FADD gene on the 11q13.3 region of chromosome 11 in humans.

<span class="mw-page-title-main">TRAF6</span> Protein-coding gene in the species Homo sapiens

TRAF6 is a TRAF human protein.

<span class="mw-page-title-main">TRAF2</span> Protein-coding gene in humans

TNF receptor-associated factor 2 is a protein that in humans is encoded by the TRAF2 gene.

<span class="mw-page-title-main">TRADD</span> Protein-coding gene in the species Homo sapiens

Tumor necrosis factor receptor type 1-associated DEATH domain protein is a protein that in humans is encoded by the TRADD gene.

<span class="mw-page-title-main">IKK2</span> Protein-coding gene in the species Homo sapiens

IKK-β also known as inhibitor of nuclear factor kappa-B kinase subunit beta is a protein that in humans is encoded by the IKBKB gene.

<span class="mw-page-title-main">Death receptor 4</span> Protein found in humans

Death receptor 4 (DR4), also known as TRAIL receptor 1 (TRAILR1) and tumor necrosis factor receptor superfamily member 10A (TNFRSF10A), is a cell surface receptor of the TNF-receptor superfamily that binds TRAIL and mediates apoptosis.

<span class="mw-page-title-main">TRAF1</span> Protein-coding gene in the species Homo sapiens

TNF receptor-associated factor 1 is a protein that in humans is encoded by the TRAF1 gene.

<span class="mw-page-title-main">TRAF3</span> Protein-coding gene in the species Homo sapiens

TNF receptor-associated factor (TRAF3) is a protein that in humans is encoded by the TRAF3 gene.

<span class="mw-page-title-main">Death receptor 5</span> Protein found in humans

Death receptor 5 (DR5), also known as TRAIL receptor 2 (TRAILR2) and tumor necrosis factor receptor superfamily member 10B (TNFRSF10B), is a cell surface receptor of the TNF-receptor superfamily that binds TRAIL and mediates apoptosis.

<span class="mw-page-title-main">RIPK2</span> Protein-coding gene in humans

Receptor-interacting serine/threonine-protein kinase 2 is an enzyme that in humans is encoded by the RIPK2 gene.

<span class="mw-page-title-main">MAP3K14</span> Protein-coding gene in the species Homo sapiens

Mitogen-activated protein kinase kinase kinase 14 (MAP3K14), also known as NF-kappa-B-inducing kinase (NIK), is a MAP kinase kinase kinase enzyme that in humans is encoded by the MAP3K14 gene.

<span class="mw-page-title-main">RIPK3</span> Protein-coding gene in humans

Receptor-interacting serine/threonine-protein kinase 3 is an enzyme that is encoded by the RIPK3 gene in humans.

<span class="mw-page-title-main">ZBP1</span> Protein-coding gene in the species Homo sapiens

Z-DNA-binding protein 1, also known as DNA-dependent activator of IFN-regulatory factors (DAI) and DLM-1, is a protein that in humans is encoded by the ZBP1 gene.

<span class="mw-page-title-main">Death domain</span> Protein domain

The death domain (DD) is a protein interaction module composed of a bundle of six alpha-helices. DD is a subclass of protein motif known as the death fold and is related in sequence and structure to the death effector domain (DED) and the caspase recruitment domain (CARD), which work in similar pathways and show similar interaction properties. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats, caspase-like folds, kinase domains, leucine zippers, leucine-rich repeats (LRR), TIR domains, and ZU5 domains.

<span class="mw-page-title-main">NLRC5</span> Protein-coding gene in the species Homo sapiens

NLRC5, short for NOD-like receptor family CARD domain containing 5, is an intracellular protein that plays a role in the immune system. NLRC5 is a pattern recognition receptor implicated in innate immunity to viruses potentially by regulating interferon activity. It also acts as an innate immune sensor to drive inflammatory cell death, PANoptosis. In humans, the NLRC5 protein is encoded by the NLRC5 gene. It has also been called NOD27, NOD4, and CLR16.1.

<span class="mw-page-title-main">Necroptosis</span> Programmed form of necrosis, or inflammatory cell death

Necroptosis is a programmed form of necrosis, or inflammatory cell death. Conventionally, necrosis is associated with unprogrammed cell death resulting from cellular damage or infiltration by pathogens, in contrast to orderly, programmed cell death via apoptosis. The discovery of necroptosis showed that cells can execute necrosis in a programmed fashion and that apoptosis is not always the preferred form of cell death. Furthermore, the immunogenic nature of necroptosis favors its participation in certain circumstances, such as aiding in defence against pathogens by the immune system. Necroptosis is well defined as a viral defense mechanism, allowing the cell to undergo "cellular suicide" in a caspase-independent fashion in the presence of viral caspase inhibitors to restrict virus replication. In addition to being a response to disease, necroptosis has also been characterized as a component of inflammatory diseases such as Crohn's disease, pancreatitis, and myocardial infarction.

<span class="mw-page-title-main">Vishva Dixit</span> Kenyan molecular biologist

Vishva Mitra Dixit is a Kenyan-American physician who is currently Vice President and Senior Fellow of Physiological Chemistry and Research Biology at Genentech.

PANoptosis is a prominent innate immune, inflammatory, and lytic cell death pathway initiated by innate immune sensors and driven by caspases and receptor-interacting protein kinases (RIPKs) through multiprotein PANoptosome complexes. The assembly of the PANoptosome cell death complex occurs in response to germline-encoded pattern-recognition receptors (PRRs) sensing pathogens, including bacterial, viral, and fungal infections, as well as pathogen-associated molecular patterns, damage-associated molecular patterns, and cytokines that are released during infections, inflammatory conditions, and cancer. Several PANoptosome complexes, such as the ZBP1-, AIM2-, RIPK1-, and NLRC5- and NLRP12-PANoptosomes, have been characterized so far.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000137275 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000021408 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. 1 2 3 4 5 6 Lin Y (2014). "RIP1-Mediated Signaling Pathways in Cell Survival and Death Control". In Shen HM, Vandenabeele P (eds.). Necrotic Cell Death. Springer New York. pp. 23–43. doi:10.1007/978-1-4614-8220-8_2. ISBN   978-1-4614-8219-2.
  6. Stanger BZ, Leder P, Lee TH, Kim E, Seed B (May 1995). "RIP: a novel protein containing a death domain that interacts with Fas/APO-1 (CD95) in yeast and causes cell death". Cell. 81 (4): 513–523. doi: 10.1016/0092-8674(95)90072-1 . PMID   7538908. S2CID   6525044.
  7. 1 2 3 4 Hsu H, Huang J, Shu HB, Baichwal V, Goeddel DV (April 1996). "TNF-dependent recruitment of the protein kinase RIP to the TNF receptor-1 signaling complex". Immunity. 4 (4): 387–396. doi: 10.1016/S1074-7613(00)80252-6 . PMID   8612133.
  8. "Entrez Gene: RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1".
  9. 1 2 3 4 Festjens N, Vanden Berghe T, Cornelis S, Vandenabeele P (March 2007). "RIP1, a kinase on the crossroads of a cell's decision to live or die". Cell Death and Differentiation. 14 (3): 400–410. doi:10.1038/sj.cdd.4402085. PMID   17301840. S2CID   8846685.
  10. Vandenabeele P, Grootjans S, Callewaert N, Takahashi N (February 2013). "Necrostatin-1 blocks both RIPK1 and IDO: consequences for the study of cell death in experimental disease models". Cell Death and Differentiation. 20 (2): 185–187. doi:10.1038/cdd.2012.151. PMC   3554339 . PMID   23197293.
  11. Online Mendelian Inheritance in Man (OMIM): Receptor-interacting serine/threonine kinase 1 (RIPK1) - 603453
  12. Zhu G, Wu CJ, Zhao Y, Ashwell JD (August 2007). "Optineurin negatively regulates TNFalpha- induced NF-kappaB activation by competing with NEMO for ubiquitinated RIP". Current Biology. 17 (16): 1438–1443. Bibcode:2007CBio...17.1438Z. doi: 10.1016/j.cub.2007.07.041 . PMID   17702576. S2CID   16248887.
  13. Vanlangenakker N, Vanden Berghe T, Vandenabeele P (January 2012). "Many stimuli pull the necrotic trigger, an overview". Cell Death and Differentiation. 19 (1): 75–86. doi:10.1038/cdd.2011.164. PMC   3252835 . PMID   22075985.
  14. Dondelinger Y, Aguileta MA, Goossens V, Dubuisson C, Grootjans S, Dejardin E, et al. (October 2013). "RIPK3 contributes to TNFR1-mediated RIPK1 kinase-dependent apoptosis in conditions of cIAP1/2 depletion or TAK1 kinase inhibition". Cell Death and Differentiation. 20 (10): 1381–1392. doi:10.1038/cdd.2013.94. PMC   3770330 . PMID   23892367.
  15. Remijsen Q, Goossens V, Grootjans S, Van den Haute C, Vanlangenakker N, Dondelinger Y, et al. (January 2014). "Depletion of RIPK3 or MLKL blocks TNF-driven necroptosis and switches towards a delayed RIPK1 kinase-dependent apoptosis". Cell Death & Disease. 5 (1): e1004. doi:10.1038/cddis.2013.531. PMC   4040672 . PMID   24434512.
  16. Christofferson DE, Li Y, Yuan J (2014). "Control of life-or-death decisions by RIP1 kinase". Annual Review of Physiology. 76: 129–150. doi: 10.1146/annurev-physiol-021113-170259 . PMID   24079414.
  17. Zhang J, Zhang H, Li J, Rosenberg S, Zhang EC, Zhou X, et al. (December 2011). "RIP1-mediated regulation of lymphocyte survival and death responses". Immunologic Research. 51 (2–3): 227–236. doi:10.1007/s12026-011-8249-3. PMC   3244575 . PMID   22038529.
  18. 1 2 Hsu H, Huang J, Shu HB, Baichwal V, Goeddel DV (April 1996). "TNF-dependent recruitment of the protein kinase RIP to the TNF receptor-1 signaling complex". Immunity. 4 (4): 387–396. doi: 10.1016/s1074-7613(00)80252-6 . PMID   8612133.
  19. 1 2 Linkermann A, Green DR (January 2014). "Necroptosis". The New England Journal of Medicine. 370 (5): 455–465. doi:10.1056/NEJMra1310050. PMC   4035222 . PMID   24476434.
  20. 1 2 3 Cho YS, Challa S, Moquin D, Genga R, Ray TD, Guildford M, et al. (June 2009). "Phosphorylation-driven assembly of the RIP1-RIP3 complex regulates programmed necrosis and virus-induced inflammation". Cell. 137 (6): 1112–1123. doi:10.1016/j.cell.2009.05.037. PMC   2727676 . PMID   19524513.
  21. 1 2 3 4 Green DR, Oberst A, Dillon CP, Weinlich R, Salvesen GS (October 2011). "RIPK-dependent necrosis and its regulation by caspases: a mystery in five acts". Molecular Cell. 44 (1): 9–16. doi:10.1016/j.molcel.2011.09.003. PMC   3192321 . PMID   21981915.
  22. "St. Jude finds NLRP12 as a new drug target for infection, inflammation and hemolytic diseases". www.stjude.org. 2023-06-01. Retrieved 2024-08-19.
  23. Pandeya A, Kanneganti TD (January 2024). "Therapeutic potential of PANoptosis: innate sensors, inflammasomes, and RIPKs in PANoptosomes". Trends in Molecular Medicine. 30 (1) (published 2024-01-30): 74–88. doi:10.1016/j.molmed.2023.10.001. PMC   10842719 . PMID   37977994.
  24. "Promising preclinical cancer therapy harnesses a newly discovered cell death pathway". www.stjude.org. 2021-10-19. Retrieved 2024-08-19.
  25. "ZBP1 links interferon treatment and dangerous inflammatory cell death during COVID-19". www.stjude.org. 2022-05-19. Retrieved 2024-08-19.
  26. "The PANoptosome: a new frontier in innate immune responses". www.stjude.org. 2021-09-01. Retrieved 2024-08-19.
  27. "In the lab, St. Jude scientists identify possible COVID-19 treatment". www.stjude.org. 2020-11-18. Retrieved 2024-08-19.
  28. "Discovering the secrets of the enigmatic caspase-6". www.stjude.org. 2020-04-15. Retrieved 2024-08-19.
  29. "Breaking the dogma: Key cell death regulator has more than one way to get the job done". www.stjude.org. 2019-12-23. Retrieved 2024-08-19.
  30. Kuriakose T, Man SM, Malireddi RK, Karki R, Kesavardhana S, Place DE, et al. (August 2016). "ZBP1/DAI is an innate sensor of influenza virus triggering the NLRP3 inflammasome and programmed cell death pathways". Science Immunology. 1 (2) (published 2016-08-05). doi:10.1126/sciimmunol.aag2045. PMC   5131924 . PMID   27917412.
  31. Karki R, Sharma BR, Lee E, Banoth B, Malireddi RK, Samir P, et al. (June 2020). "Interferon regulatory factor 1 regulates PANoptosis to prevent colorectal cancer". JCI Insight. 5 (12) (published 2020-06-18): e136720. doi:10.1172/jci.insight.136720. PMC   7406299 . PMID   32554929.
  32. "Diet affects mix of intestinal bacteria and the risk of inflammatory bone disease". www.stjude.org. 2014-10-02. Retrieved 2024-08-19.
  33. Malireddi RK, Karki R, Sundaram B, Kancharana B, Lee S, Samir P, et al. (July 2021). "Inflammatory Cell Death, PANoptosis, Mediated by Cytokines in Diverse Cancer Lineages Inhibits Tumor Growth". ImmunoHorizons. 5 (7) (published 2022-01-21): 568–580. doi:10.4049/immunohorizons.2100059. PMC   8522052 . PMID   34290111.
  34. Karki R, Sharma BR, Tuladhar S, Williams EP, Zalduondo L, Samir P, et al. (January 2021). "Synergism of TNF-α and IFN-γ Triggers Inflammatory Cell Death, Tissue Damage, and Mortality in SARS-CoV-2 Infection and Cytokine Shock Syndromes". Cell. 184 (1) (published 2021-01-07): 149–168.e17. doi:10.1016/j.cell.2020.11.025. PMC   7674074 . PMID   33278357.
  35. Karki R, Lee S, Mall R, Pandian N, Wang Y, Sharma BR, et al. (August 2022). "ZBP1-dependent inflammatory cell death, PANoptosis, and cytokine storm disrupt IFN therapeutic efficacy during coronavirus infection". Science Immunology. 7 (74) (published 2022-05-19): eabo6294. doi:10.1126/sciimmunol.abo6294. PMC   9161373 . PMID   35587515.
  36. Wang Y, Pandian N, Han JH, Sundaram B, Lee S, Karki R, et al. (September 2022). "Single cell analysis of PANoptosome cell death complexes through an expansion microscopy method". Cellular and Molecular Life Sciences. 79 (10) (published 2023-09-28): 531. doi:10.1007/s00018-022-04564-z. PMC   9545391 . PMID   36169732.
  37. Sundaram B, Pandian N, Mall R, Wang Y, Sarkar R, Kim HJ, et al. (June 2023). "NLRP12-PANoptosome activates PANoptosis and pathology in response to heme and PAMPs". Cell. 186 (13) (published 2024-06-22): 2783–2801.e20. doi:10.1016/j.cell.2023.05.005. PMC   10330523 . PMID   37267949.
  38. 1 2 Malireddi RK, Gurung P, Mavuluri J, Dasari TK, Klco JM, Chi H, et al. (April 2018). "TAK1 restricts spontaneous NLRP3 activation and cell death to control myeloid proliferation". The Journal of Experimental Medicine. 215 (4) (published 2018-04-02): 1023–1034. doi:10.1084/jem.20171922. PMC   5881469 . PMID   29500178.
  39. 1 2 Malireddi RK, Gurung P, Kesavardhana S, Samir P, Burton A, Mummareddy H, et al. (March 2020). "Innate immune priming in the absence of TAK1 drives RIPK1 kinase activity-independent pyroptosis, apoptosis, necroptosis, and inflammatory disease". The Journal of Experimental Medicine. 217 (3) (published 2020-03-02). doi:10.1084/jem.20191644. PMC   7062518 . PMID   31869420.
  40. 1 2 3 Malireddi RK, Kesavardhana S, Karki R, Kancharana B, Burton AR, Kanneganti TD (December 2020). "RIPK1 Distinctly Regulates Yersinia-Induced Inflammatory Cell Death, PANoptosis". ImmunoHorizons. 4 (12) (published 2020-12-11): 789–796. doi:10.4049/immunohorizons.2000097. PMC   7906112 . PMID   33310881.
  41. 1 2 Ofengeim D, Mazzitelli S, Ito Y, DeWitt JP, Mifflin L, Zou C, et al. (October 2017). "RIPK1 mediates a disease-associated microglial response in Alzheimer's disease". Proceedings of the National Academy of Sciences of the United States of America. 114 (41): E8788 –E8797. Bibcode:2017PNAS..114E8788O. doi: 10.1073/pnas.1714175114 . PMC   5642727 . PMID   28904096.
  42. "What is ALS?". ALSA.org. Retrieved 2017-10-21.
  43. Ito Y, Ofengeim D, Najafov A, Das S, Saberi S, Li Y, et al. (August 2016). "RIPK1 mediates axonal degeneration by promoting inflammation and necroptosis in ALS". Science. 353 (6299): 603–608. Bibcode:2016Sci...353..603I. doi:10.1126/science.aaf6803. PMC   5444917 . PMID   27493188.
  44. "Transmission of Nerve Impulses". www.cliffsnotes.com. Retrieved 2017-10-21.
  45. Media Update: Sanofi presents new data from robust MS clinical pipeline exploring multiple approaches to address important unmet patient needs October 2, 2023
  46. Tao P, Sun J, Wu Z, Wang S, Wang J, Li W, et al. (January 2020). "A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1". Nature. 577 (7788): 109–114. doi:10.1038/s41586-019-1830-y. PMID   31827280. S2CID   209311868.
  47. Lalaoui N, Boyden SE, Oda H, Wood GM, Stone DL, Chau D, et al. (January 2020). "Mutations that prevent caspase cleavage of RIPK1 cause autoinflammatory disease". Nature. 577 (7788): 103–108. doi:10.1038/s41586-019-1828-5. PMC   6930849 . PMID   31827281.; Lay summary in: Ganguly P (23 December 2019). "Researchers discover a new autoinflammatory disease called CRIA syndrome". Genome.gov. National Human Genome Research Institute. Retrieved 6 February 2022.
  48. 1 2 3 4 Bertrand MJ, Milutinovic S, Dickson KM, Ho WC, Boudreault A, Durkin J, et al. (June 2008). "cIAP1 and cIAP2 facilitate cancer cell survival by functioning as E3 ligases that promote RIP1 ubiquitination". Molecular Cell. 30 (6): 689–700. doi: 10.1016/j.molcel.2008.05.014 . PMID   18570872.
  49. 1 2 Liao W, Xiao Q, Tchikov V, Fujita K, Yang W, Wincovitch S, et al. (May 2008). "CARP-2 is an endosome-associated ubiquitin ligase for RIP and regulates TNF-induced NF-kappaB activation". Current Biology. 18 (9): 641–649. Bibcode:2008CBio...18..641L. doi:10.1016/j.cub.2008.04.017. PMC   2587165 . PMID   18450452.
  50. 1 2 Chaudhary PM, Eby MT, Jasmin A, Kumar A, Liu L, Hood L (September 2000). "Activation of the NF-kappaB pathway by caspase 8 and its homologs". Oncogene. 19 (39): 4451–4460. doi: 10.1038/sj.onc.1203812 . PMID   11002417.
  51. Oshima S, Turer EE, Callahan JA, Chai S, Advincula R, Barrera J, et al. (February 2009). "ABIN-1 is a ubiquitin sensor that restricts cell death and sustains embryonic development". Nature. 457 (7231): 906–909. Bibcode:2009Natur.457..906O. doi:10.1038/nature07575. PMC   2642523 . PMID   19060883.
  52. Kataoka T, Budd RC, Holler N, Thome M, Martinon F, Irmler M, et al. (June 2000). "The caspase-8 inhibitor FLIP promotes activation of NF-kappaB and Erk signaling pathways". Current Biology. 10 (11): 640–648. Bibcode:2000CBio...10..640K. doi: 10.1016/S0960-9822(00)00512-1 . PMID   10837247. S2CID   14819939.
  53. 1 2 Duan H, Dixit VM (January 1997). "RAIDD is a new 'death' adaptor molecule". Nature. 385 (6611): 86–89. Bibcode:1997Natur.385...86D. doi:10.1038/385086a0. hdl: 2027.42/62739 . PMID   8985253. S2CID   4317538.
  54. Ahmad M, Srinivasula SM, Wang L, Talanian RV, Litwack G, Fernandes-Alnemri T, et al. (February 1997). "CRADD, a novel human apoptotic adaptor molecule for caspase-2, and FasL/tumor necrosis factor receptor-interacting protein RIP". Cancer Research. 57 (4): 615–619. PMID   9044836.
  55. Yu PW, Huang BC, Shen M, Quast J, Chan E, Xu X, et al. (May 1999). "Identification of RIP3, a RIP-like kinase that activates apoptosis and NFkappaB". Current Biology. 9 (10): 539–542. Bibcode:1999CBio....9..539Y. doi: 10.1016/S0960-9822(99)80239-5 . PMID   10339433. S2CID   18024859.
  56. Li J, McQuade T, Siemer AB, Napetschnig J, Moriwaki K, Hsiao YS, et al. (July 2012). "The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis". Cell. 150 (2): 339–350. doi:10.1016/j.cell.2012.06.019. PMC   3664196 . PMID   22817896.
  57. Shembade N, Parvatiyar K, Harhaj NS, Harhaj EW (March 2009). "The ubiquitin-editing enzyme A20 requires RNF11 to downregulate NF-kappaB signalling". The EMBO Journal. 28 (5): 513–522. doi:10.1038/emboj.2008.285. PMC   2657574 . PMID   19131965.
  58. Chen D, Li X, Zhai Z, Shu HB (May 2002). "A novel zinc finger protein interacts with receptor-interacting protein (RIP) and inhibits tumor necrosis factor (TNF)- and IL1-induced NF-kappa B activation". The Journal of Biological Chemistry. 277 (18): 15985–15991. doi: 10.1074/jbc.M108675200 . PMID   11854271.
  59. Sanz L, Sanchez P, Lallena MJ, Diaz-Meco MT, Moscat J (June 1999). "The interaction of p62 with RIP links the atypical PKCs to NF-kappaB activation". The EMBO Journal. 18 (11): 3044–3053. doi:10.1093/emboj/18.11.3044. PMC   1171386 . PMID   10356400.
  60. Kim JW, Choi EJ, Joe CO (September 2000). "Activation of death-inducing signaling complex (DISC) by pro-apoptotic C-terminal fragment of RIP". Oncogene. 19 (39): 4491–4499. doi: 10.1038/sj.onc.1203796 . PMID   11002422.
  61. Blankenship JW, Varfolomeev E, Goncharov T, Fedorova AV, Kirkpatrick DS, Izrael-Tomasevic A, et al. (January 2009). "Ubiquitin binding modulates IAP antagonist-stimulated proteasomal degradation of c-IAP1 and c-IAP2(1)". The Biochemical Journal. 417 (1): 149–160. doi:10.1042/BJ20081885. PMID   18939944.
  62. 1 2 Newton K, Matsumoto ML, Wertz IE, Kirkpatrick DS, Lill JR, Tan J, et al. (August 2008). "Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies". Cell. 134 (4): 668–678. doi: 10.1016/j.cell.2008.07.039 . PMID   18724939. S2CID   3955385.
  63. 1 2 Varfolomeev E, Goncharov T, Fedorova AV, Dynek JN, Zobel K, Deshayes K, et al. (September 2008). "c-IAP1 and c-IAP2 are critical mediators of tumor necrosis factor alpha (TNFalpha)-induced NF-kappaB activation". The Journal of Biological Chemistry. 283 (36): 24295–24299. doi: 10.1074/jbc.C800128200 . PMC   3259840 . PMID   18621737.
  64. Takeuchi M, Rothe M, Goeddel DV (August 1996). "Anatomy of TRAF2. Distinct domains for nuclear factor-kappaB activation and association with tumor necrosis factor signaling proteins". The Journal of Biological Chemistry. 271 (33): 19935–19942. doi: 10.1074/jbc.271.33.19935 . PMID   8702708.
  65. Tada K, Okazaki T, Sakon S, Kobarai T, Kurosawa K, Yamaoka S, et al. (September 2001). "Critical roles of TRAF2 and TRAF5 in tumor necrosis factor-induced NF-kappa B activation and protection from cell death". The Journal of Biological Chemistry. 276 (39): 36530–36534. doi: 10.1074/jbc.M104837200 . PMID   11479302.
  66. Malinin NL, Boldin MP, Kovalenko AV, Wallach D (February 1997). "MAP3K-related kinase involved in NF-kappaB induction by TNF, CD95 and IL-1". Nature. 385 (6616): 540–544. doi:10.1038/385540a0. PMID   9020361. S2CID   4366355.
  67. Ma Q, Zhou L, Shi H, Huo K (June 2008). "NUMBL interacts with TAB2 and inhibits TNFalpha and IL-1beta-induced NF-kappaB activation". Cellular Signalling. 20 (6): 1044–1051. doi:10.1016/j.cellsig.2008.01.015. PMID   18299187.
  68. Belizário J, Vieira-Cordeiro L, Enns S (2015). "Necroptotic Cell Death Signaling and Execution Pathway: Lessons from Knockout Mice". Mediators of Inflammation. 2015: 128076. doi: 10.1155/2015/128076 . PMC   4600508 . PMID   26491219.

Further reading