Haplogroup S1a (Y-DNA)

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Haplogroup S1a
Possible place of origin Maritime Southeast Asia or Oceania
Ancestor S1 (S-B255)
DescendantsS-P405
Defining mutationsZ41335, Z41336, Z41337, Z41338, Z41339, Z41340, Z41341

Haplogroup S1a is a human Y-DNA haplogroup, defined by SNPs Z41335, Z41336, Z41337, Z41338, Z41339, Z41340, and Z41341.

Contents

S1a is found primarily in Melanesia (especially in Papua New Guinea), Micronesia, Maritime Southeast Asia and among indigenous Australians. [1]

As of 2017, it includes an unnamed primary subclade referred to by ISOGG as "S1a~" (P405), [1] [2] [3] (which was previously known as K2b1a). The "~" symbol is ISOGG's way of indicating that an unverified and as-yet unnamed immediate ancestor may exist.

Its secondary subclades include: S1a1 (Z42413), S1a2~ (P79, P307) and S1a3 (P315).

Before 2016, S1a1b (M230, P202, P204) was known as Haplogroup S* (and before that as Haplogroup K5). (In 2016, haplogroup S-B254 was "promoted" to S*, from its previous position of S1.)

The "sibling" clades of S1a include: S1b (B275, Z33756, Z33757, Z33758, Z33759), S1c (Z41926, Z41927, Z41928, Z41929, Z41930) and S1d (SK1806).


Phylogeny

Haplogroup S1 (B255) includes the following subclades:
S1a Z41335

S1b~ B275, Z33756, Z33757, Z33758, Z33759
S1c~ Z41926, Z41927, Z41928, Z41929, Z41930
S1d SK1806
(Based on the 2017 ISOGG tree and subsequent published research. [1] )

Distribution

Basal S1a* appears to be extremely rare or extinct in living males. The primary subclade S-P405* is also relatively rare, but is found at significant levels among various Micronesian populations: 5.6%. It is also found among males on the Indonesian island of Sumba at a rate of 0.2%. [4]

According to ISOGG (2017), S1a1 (Z42413) has been found among the Lebbo' people of Indonesia and S1a1a1 (P60) among indigenous Australians. [1] One study has reported finding S-M230 (S1a1b) in: 52% (16/31) of a sample from the Papua New Guinea (PNG) Highlands; 21% (7/34) of a sample from the Moluccas (Maluku); 16% (5/31) of a sample from the Papua New Guinea coast; 12.5% (2/16) of a sample of Tolai from New Britain; 10% (3/31) of a sample from Nusa Tenggara, and; 2% (2/89) of a sample from the West New Guinea lowlands/coast. One subclade, Haplogroup S1a1b1d1a (S-M226.1) has been found at low frequencies in the Admiralty Islands and along the coast of mainland PNG. [5] [6]

The distribution of the other major subclades of S1a according to ISOGG, [1] is as follows:

Footnotes

  1. 1 2 3 4 5 International Society of Genetic Genealogy (ISOGG; 2017), Y-DNA Haplogroup Tree 2015 (24 March 2017).
  2. "PhyloTree y - Minimal y tree".
  3. Karafet TM, Mendez FL, Sudoyo H, Lansing JS, Hammer MF (June 2014). "Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia". Eur J Hum Genet. 23 (3): 369–373. doi:10.1038/ejhg.2014.106. PMC   4326703 . PMID   24896152.
  4. Karafet TM, Mendez FL, Sudoyo H, Lansing JS, Hammer MF (2013). "Table 1 ("Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia")". European Journal of Human Genetics. 23 (3): 369–373. doi:10.1038/ejhg.2014.106. PMC   4326703 . PMID   24896152.
  5. Kayser M, Choi Y, Van Oven M, Mona S, Brauer S, Trent RJ, Suarkia D, Schiefenhovel W, Stoneking M (2008). "The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia". Molecular Biology and Evolution. 25 (7): 1362–74. doi: 10.1093/molbev/msn078 . PMID   18390477.
  6. Cox MP, Mirazón Lahr M (2006). "Y-chromosome diversity is inversely associated with language affiliation in paired Austronesian- and Papuan-speaking communities from Solomon Islands". American Journal of Human Biology. 18 (1): 35–50. doi:10.1002/ajhb.20459. PMID   16378340. S2CID   4824401.
Phylogenetic tree of human Y-chromosome DNA haplogroups [χ 1] [χ 2]
"Y-chromosomal Adam"
A00 A0-T   [χ 3]
A0 A1   [χ 4]
A1a A1b
A1b1 BT
B CT
DE CF
D E C F
F1   F2   F3   GHIJK
G HIJK
IJK H
IJ K
I    J      LT   [χ 5]        K2   [χ 6]
L      T     K2a   [χ 7]         K2b   [χ 8]      K2c      K2d K2e   [χ 9]   
K-M2313   [χ 10]      K2b1   [χ 11] P   [χ 12]
NO    S   [χ 13]   M   [χ 14]     P1      P2
N O Q R

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