Methanocalculus

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Methanocalculus
Scientific classification
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Methanocalculus

Ollivier et al. 1998
Type species
Methanocalculus halotolerans
Ollivier et al. 1998
Species

Methanocalculus is a genus of the Methanomicrobiales, and is known to include methanogens. [1]

Contents

The genome of Methanocalculus is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. [2] The species within Methanocalculus also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. [3] Some species within Methanocalculus are neutrophiles, and Methanocalculus natronophilus , discovered in 2013, is a strict alkaliphile. [2]

Nomenclature

The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means gravel-shaped organism that produces methane. [3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [4] and National Center for Biotechnology Information (NCBI). [1]

16S rRNA based LTP_06_2022 [5] [6] [7] 53 marker proteins based GTDB 08-RS214 [8] [9] [10]
Methanocalculus

M. alkaliphilus Sorokin et al. 2015

M. chunghsingensis Lai et al. 2004

M. halotolerans Ollivier et al. 1998

M. natronophilus Zhilina et al. 2014

M. pumilus Mori et al. 2000

M. taiwanensis Lai et al. 2002

Methanocalculus

M. alkaliphilus

M. chunghsingensis

M. natronophilus

M. taiwanensis

See also

Related Research Articles

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<span class="mw-page-title-main">Acidilobales</span> Order of archaea

Acidilobales are an order of archaea in the class Thermoprotei.

Methanobacteriales is an order of archaeans in the class Methanobacteria. Species within this order differ from other methanogens in that they can use fewer catabolic substrates and have distinct morphological characteristics, lipid compositions, and RNA sequences. Their cell walls are composed of pseudomurein. Most species are Gram-positive with rod-shaped bodies and some can form long filaments. Most of them use formate to reduce carbon dioxide, but those of the genus Methanosphaera use hydrogen to reduce methanol to methane.

In taxonomy, the Methanococcales are an order of the Methanococci.

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<span class="mw-page-title-main">Sulfolobales</span> Order of archaea

Sulfolobales is an order of archaeans in the class Thermoprotei.

In taxonomy, the Methanococcaceae are a family of the Methanococcales. These organisms produce methane from formate or through the reduction of carbon dioxide with hydrogen. They live in marshes and other coastal areas. Members of the genus Methanothermococcus have been found in deep-sea hydrothermal vents.

In taxonomy, the Methanocorpusculaceae are a family of microbes within the order Methanomicrobiales. It contains exactly one genus, Methanocorpusculum. The species within Methanocorpusculum were first isolated from anaerobic digesters and anaerobic wastewater treatment plants. In the wild, they prefer freshwater environments. Unlike many other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow.

Methanomicrobiaceae are a family of archaea in the order the Methanomicrobiales.

<span class="mw-page-title-main">Methanosarcinaceae</span> Family of archaea

In taxonomy, the Methanosarcinaceae are a family of the Methanosarcinales.

<i>Acidilobus</i> Genus of archaea

Acidilobus is a genus of archaea in the family Acidilobaceae.

In taxonomy, Methanolobus is a genus of methanogenic archaea within the Methanosarcinaceae. These organisms are strictly anaerobes and live exclusively through the production of methane, but the species within Methanolobus cannot use carbon dioxide with hydrogen, acetate or formate, only methyl compounds. The cells are irregular coccoid in form and approximately 1 μm in diameter. They do not form endospores. They are Gram negative and only some are motile, via a single flagellum. They are found in lake and ocean sediments that lack oxygen.

Halalkalicoccus is a genus of the Halobacteriaceae.

Halobaculum is a genus of the Halorubraceae.

Halobiforma is a genus of halophilic archaea of the family Natrialbaceae.

In taxonomy, Halogeometricum is a genus of the Haloferacaceae.

In taxonomy, Haloplanus is a genus of the Halobacteriaceae.

In taxonomy, Halovivax is a genus of the Natrialbaceae. Some species of Halovivax are halophiles and have been found in Iran's Aran-Bidgol hypersaline lake.

Natronomonas is a genus of the Halobacteriaceae.

Natronorubrum is a genus in the family Halobacteriaceae.

References

  1. 1 2 Sayers; et al. "Methanocalculaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
  2. 1 2 T.N. Zhilina; D.G. Zavarzina; V.V. Kevbrin; T.V. Kolganova (November 2013). "Methanocalculus natronophilus sp. nov., a new alkaliphilic hydrogenotrophic methanogenic archaeon from a soda lake, and proposal of the new family Methanocalculaceae". Mikrobiologiya. 82 (6): 698–706. doi:10.1134/S0026261713060131. S2CID   9754709.
  3. 1 2 David R. Boone; Richard W. Castenholz, eds. (2012-01-13). Bergey's Manual of Systematic Bacteriology. Vol. 1 (2 ed.). Nueva York: Springer Science and Business Media. p. 267. doi:10.1007/978-0-387-21609-6. ISBN   978-1-4419-3159-7. S2CID   41426624 . Retrieved 2016-07-26.
  4. J.P. Euzéby. "Methanocalculaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
  5. "The LTP" . Retrieved 10 May 2023.
  6. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  7. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  8. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  9. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading