Methanocalculus

Methanocalculus
Scientific classification
Domain:	Archaea
Kingdom:	Methanobacteriati
Phylum:	Halobacteriota
Class:	Methanomicrobia
Order:	Methanomicrobiales
Family:	Methanocorpusculaceae
Genus:	Methanocalculus Ollivier et al. 1998
Type species
Methanocalculus halotolerans Ollivier et al. 1998
Species
M. alkaliphilus M. chunghsingensis M. halotolerans M. natronophilus M. pumilus M. taiwanensis

Methanocalculus is a genus of archaeans in the order Methanomicrobiales, and is known to include methanogens. ^[1]

The genome of Methanocalculus is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. ^[2] The species within Methanocalculus also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. ^[3] Some species within Methanocalculus are neutrophiles, and Methanocalculus natronophilus , discovered in 2013, is a strict alkaliphile. ^[2]

Nomenclature

The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means gravel-shaped organism that produces methane. ^[3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) ^[4] and National Center for Biotechnology Information (NCBI). ^[1]

16S rRNA based LTP_06_2022 [5] [6] [7]	53 marker proteins based GTDB 08-RS214 [8] [9] [10]
Methanocalculus M. alkaliphilus Sorokin et al. 2015 M. chunghsingensis Lai et al. 2004 M. halotolerans Ollivier et al. 1998 M. natronophilus Zhilina et al. 2014 M. pumilus Mori et al. 2000 M. taiwanensis Lai et al. 2002	Methanocalculus M. alkaliphilus M. chunghsingensis M. natronophilus M. taiwanensis

See also

• List of Archaea genera

References

1. Sayers; et al. "Methanocalculaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
2. T.N. Zhilina; D.G. Zavarzina; V.V. Kevbrin; T.V. Kolganova (November 2013). "Methanocalculus natronophilus sp. nov., a new alkaliphilic hydrogenotrophic methanogenic archaeon from a soda lake, and proposal of the new family Methanocalculaceae". Mikrobiologiya. 82 (6): 698–706. doi:10.1134/S0026261713060131. S2CID   9754709.
3. David R. Boone; Richard W. Castenholz, eds. (2012-01-13). Bergey's Manual of Systematic Bacteriology. Vol. 1 (2 ed.). Nueva York: Springer Science and Business Media. p. 267. doi:10.1007/978-0-387-21609-6. ISBN   978-1-4419-3159-7. S2CID   41426624 . Retrieved 2016-07-26.
4. J.P. Euzéby. "Methanocalculaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
5. "The LTP" . Retrieved 10 May 2023.
6. "LTP_all tree in newick format" . Retrieved 10 May 2023.
7. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
8. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
9. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
10. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading

• Judicial Commission of the International Committee on Systematics of Prokaryotes (2005). "The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobacterium, Methanobacterium, Methanococcus, Methanomicrobium, Planctomyces, Prochloron, Sulfolobus, Thermococcus, Thermoproteus and Verrucomicrobium, respectively. Opinion 79". Int. J. Syst. Evol. Microbiol. 55 (Pt 1): 517–518. doi: 10.1099/ijs.0.63548-0 . PMID   15653928.
• Euzeby JP; Tindall BJ (2001). "Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion". Int. J. Syst. Evol. Microbiol. 51 (Pt 2): 725–727. doi: 10.1099/00207713-51-2-725 . PMID   11321122.
• Ollivier B; Fardeau ML; Cayol JL; Magot M; et al. (1998). "Methanocalculus halotolerans gen. nov., sp. nov., isolated from an oil-producing well". Int. J. Syst. Bacteriol. 48 (3): 821–828. doi: 10.1099/00207713-48-3-821 . PMID   9734036.
• Rouviere P; Mandelco L; Winker S; Woese CR (1992). "A detailed phylogeny for the Methanomicrobiales". Syst. Appl. Microbiol. 15 (3): 363–371. doi:10.1016/S0723-2020(11)80209-2. PMID   11540078.
• Balch WE; Fox GE; Magrum LJ; Woses CR; et al. (1979). "Methanogens: reevaluation of a unique biological group". Microbiol. Rev. 43 (2): 260–296. doi:10.1128/MMBR.43.2.260-296.1979. PMC   281474 . PMID   390357.
• Zhilina, T. N.; Zavarzina, D. G.; Kevbrin, V. V.; Kolganova, T. V. (November 2013). "Methanocalculus natronophilus sp. nov., a new alkaliphilic hydrogenotrophic methanogenic archaeon from a soda lake, and proposal of the new family Methanocalculaceae". Microbiology. 82 (6): 698–706. doi:10.1134/S0026261713060131. S2CID   9754709.

External links

• Methanocalculus at BacDive - the Bacterial Diversity Metadatabase