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Halobacteriaceae is a family in the order Halobacteriales and the domain Archaea. Halobacteriaceae represent a large part of halophilic Archaea, along with members in two other methanogenic families, Methanosarcinaceae and Methanocalculaceae. The family consists of many diverse genera that can survive extreme environmental niches. Most commonly, Halobacteriaceae are found in hypersaline lakes and can even tolerate sites polluted by heavy metals. They include neutrophiles, acidophiles, alkaliphiles, and there have even been psychrotolerant species discovered. Some members have been known to live aerobically, as well as anaerobically, and they come in many different morphologies. These diverse morphologies include rods in genus Halobacterium, cocci in Halococcus, flattened discs or cups in Haloferax, and other shapes ranging from flattened triangles in Haloarcula to squares in Haloquadratum, and Natronorubrum. Most species of Halobacteriaceae are best known for their high salt tolerance and red-pink pigmented members, but there are also non-pigmented species and those that require moderate salt conditions. Some species of Halobacteriaceae have been shown to exhibit phosphorus solubilizing activities that contribute to phosphorus cycling in hypersaline environments. Techniques such as 16S rRNA analysis and DNA-DNA hybridization have been major contributors to taxonomic classification in Halobacteriaceae, partly due to the difficulty in culturing halophilic Archaea.
Methanococcus is a genus of coccoid methanogens of the family Methanococcaceae. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaeal genome to be completely sequenced, revealing many novel and eukaryote-like elements.
In the taxonomy of microorganisms, the Methanomicrobia are a class of the Euryarchaeota.
Acidilobales are an order of archaea in the class Thermoprotei.
Methanobacteriales is an order of archaeans in the class Methanobacteria. Species within this order differ from other methanogens in that they can use fewer catabolic substrates and have distinct morphological characteristics, lipid compositions, and RNA sequences. Their cell walls are composed of pseudomurein. Most species are Gram-positive with rod-shaped bodies and some can form long filaments. Most of them use formate to reduce carbon dioxide, but those of the genus Methanosphaera use hydrogen to reduce methanol to methane.
In taxonomy, the Methanococcales are an order of the Methanococci.
In the taxonomy of microorganisms, the Methanomicrobiales are an order of the Methanomicrobia. Methanomicrobiales are strictly carbon dioxide reducing methanogens, using hydrogen or formate as the reducing agent. As seen from the phylogenetic tree based on 'The All-Species Living Tree' Project the family Methanomicrobiaceae is highly polyphyletic within the Methanomicrobiales.
Sulfolobales is an order of archaeans in the class Thermoprotei.
In taxonomy, the Methanocaldococcaceae are a family of microbes within the order Methanococcales. It contains two genera, the type genus Methanocaldococcus and Methanotorris. These species are coccoid in form, neutrophilic to slightly acidophilic, and predominantly motile, and they have a very short generation period, from 25 to 45 minutes under optimal conditions. They produce energy exclusively through the reduction of carbon dioxide with hydrogen. Some species have been found in marine hydrothermal vents.
In taxonomy, the Methanococcaceae are a family of the Methanococcales. These organisms produce methane from formate or through the reduction of carbon dioxide with hydrogen. They live in marshes and other coastal areas. Members of the genus Methanothermococcus have been found in deep-sea hydrothermal vents.
Methanomicrobiaceae are a family of archaea in the order the Methanomicrobiales.
Methanospirillaceae are a family of microbes within Methanomicrobiales.
Sulfolobaceae are a family of the Sulfolobales belonging to the domain Archaea. The family consists of several genera adapted to survive environmental niches with extreme temperature and low pH conditions.
In taxonomy, the Thermococcaceae are a family of the Thermococcales. Almost all species within the three genera of Thermococcaceae were isolated from hydrothermal vents in the ocean. All are strictly anaerobes.
Thermofilaceae are a family of archaea in the order Thermoproteales.
Halalkalicoccus is a genus of the Halobacteriaceae.
Halobiforma is a genus of halophilic archaea of the family Natrialbaceae.
Halorhabdus is a genus of halophilic archaea in the Haloarculaceae. With an extremely high salinity optimum of 27% NaCl, Halorhabdus has one of the highest reported salinity optima of any living organism.
In taxonomy, Methanocorpusculum is a genus of microbes within the family Methanocorpusculaceae. The species within Methanocorpusculum were first isolated from biodisgester wastewater and activated sludge from anaerobic digestors. In nature, they live in freshwater environments. Unlike most other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow.
Methanocalculus is a genus of the Methanomicrobiales, and is known to include methanogens.
References
- 1 2 Sayers; et al. "Methanocorpusculaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
- ↑ Oren, Aharon (19 October 2014). "The Family Methanocorpusculaceae". The Prokaryotes. Springer: 225–230. doi:10.1007/978-3-642-38954-2_314. ISBN 978-3-642-38953-5.
- 1 2 David R. Boone; Richard W. Castenholz, eds. (2001). Bergey's Manual of Systematic Bacteriology. Vol. 1 (1 ed.). p. 262. doi:10.1007/978-0-387-21609-6. ISBN 978-1-4419-3159-7. S2CID 41426624 . Retrieved 2016-07-31.
- ↑ J.P. Euzéby. "Methanocorpusculaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
- ↑ "The LTP" . Retrieved 10 May 2023.
- ↑ "LTP_all tree in newick format" . Retrieved 10 May 2023.
- ↑ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
- ↑ "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
- ↑ "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
- ↑ "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
