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References
- ↑ J.P. Euzéby. "Archaea". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
- ↑ Sayers; et al. "Archaea". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- ↑ Parks, DH; Chuvochina, M; Waite, DW; Rinke, C; Skarshewski, A; Chaumeil, PA; Hugenholtz, P (November 2018). "A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life". Nature Biotechnology. 36 (10): 996–1004. bioRxiv 10.1101/256800 . doi:10.1038/nbt.4229. PMID 30148503. S2CID 52093100.
- ↑ Parks, DH; Chuvochina, M; Chaumeil, PA; Rinke, C; Mussig, AJ; Hugenholtz, P (September 2020). "A complete domain-to-species taxonomy for Bacteria and Archaea". Nature Biotechnology. 38 (9): 1079–1086. bioRxiv 10.1101/771964 . doi:10.1038/s41587-020-0501-8. PMID 32341564. S2CID 216560589.
- ↑ Chaumeil, PA; Mussig, AJ; Hugenholtz, P; Parks, DH (15 November 2019). "GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database". Bioinformatics. 36 (6): 1925–1927. doi: 10.1093/bioinformatics/btz848 . PMC 7703759 . PMID 31730192.
- ↑ Almeida, Alexandre; Nayfach, Stephen; Boland, Miguel; Strozzi, Francesco; Beracochea, Martin; Shi, Zhou Jason; Pollard, Katherine S.; Sakharova, Ekaterina; Parks, Donovan H.; Hugenholtz, Philip; Segata, Nicola; Kyrpides, Nikos C.; Finn, Robert D. (20 July 2020). "A unified catalog of 204,938 reference genomes from the human gut microbiome". Nature Biotechnology. 39 (1): 105–114. doi: 10.1038/s41587-020-0603-3 . PMC 7801254 . PMID 32690973.
- ↑ Nayfach, Stephen; et al. (9 November 2020). "A genomic catalog of Earth's microbiomes". Nature Biotechnology. 39 (4): 499–509. doi: 10.1038/s41587-020-0718-6 . PMC 8041624 . PMID 33169036.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
- ↑ "The LTP" . Retrieved 23 February 2021.
- ↑ "LTP_all tree in newick format" . Retrieved 23 February 2021.
- ↑ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
- 1 2 3 Ruize Xie, Yinzhao Wang, Danyue Huang, Jialin Hou, Liuyang Li, Haining Hu, Xiaoxiao Zhao, Fengping Wang: Expanding Asgard members in the domain of Archaea sheds new light on the origin of eukaryotes. In: Science China Life Sciences, vol. 65, p. 818–829, April 2022. doi:10.1007/s11427-021-1969-6, PMID 34378142. Epub: Aug. 6, 2021. Along with:Njordarchaeota, a new candidate for a sister group to eukaryotes. EurekAlert!, Oct. 20, 2021.
- ↑ LPSN: Order "Candidatus Freyrarchaeales"
- ↑ LPSN: Order "Candidatus Njordarchaeales"
- 1 2 3 Fabai Wu, Daan R. Speth, Alon Philosof, Antoine Crémière, Aditi Narayanan, Roman A. Barco, Stephanie A. Connon, Jan P. Amend, Igor A. Antoshechkin, Victoria J. Orphan: Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes. In: Nature Microbiology volume 7, p. 200–212, Jan 13, 2022. doi:10.1038/s41564-021-01039-y, PMID 35027677, PMC 8813620. See also Extended Data Fig. 2.
- ↑ LPSN: Family "Candidatus Sigynarchaeaceae"