Haloferacaceae

Last updated

Haloferacaceae
Haloquadratum walsbyi00.jpg
Haloquadratum walsbyi
Scientific classification
Domain:
Phylum:
Class:
Order:
Family:
Haloferacaceae

Gupta et al. 2015
Genera

Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. [1] [2] [3] The type genus of this family is Haloferax. [4] Its biochemical characteristics are the same as the order Haloferacales.

Contents

The name Haloferacaceae is derived from the Latin term Haloferax, referring to the type genus of the family and the suffix "-ceae", an ending used to denote a family. Together, Haloferacaceae refers to a family whose nomenclatural type is the genus Haloferax.

Taxonomy and molecular signatures

As of 2021, Haloferacaceae contains 10 validly published genera. [4] This family can be molecularly distinguished from other Halobacteria by the presence of five conserved signature proteins (CSPs) and four conserved signature indels (CSIs) present in the following proteins: thermosome, ribonuclease BN and hypothetical proteins. [1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [5] and National Center for Biotechnology Information (NCBI). [6]

16S rRNA-based LTP_08_2023 [7] [8] [9] 53 marker proteins based GTDB 07-RS207 [10] [11] [12]
Haloferacales

Halobaculum

Salinigranum

Halolamina

Natronocalculus Sorokin et al. 2023

Halalkalirubrum Zuo et al. 2022

Halohasta

Halonotius

Haloferax *

Halopelagius *

Halogeometricum *

Halobellus (incl. Haloquadratum ) *

Halobium

Halegenticoccus *

Haloprofundus *

Halogranum *

Haloplanus *

Halalkaliarchaeum

Halopenitus

Haloparvum Chen et al. 2016 *

Halorubrum

Haloferacales

Halorubraceae

Haloferacaceae

Haloplanus Elevi Bardavid et al. 2007

Haloprofundus Zhang et al. 2017

Halegenticoccus Liu et al. 2020

Halogranum Cui et al. 2010

Salinigranum

Haloferax Torreblanca et al. 1986

Halopelagius Cui et al. 2010

Halogeometricum Montalvo-Rodriguez et al. 1998

Haloquadratum Burns et al. 2007

Halobellus Cui et al. 2011

See also

Related Research Articles

Halobacteriaceae is a family in the order Halobacteriales and the domain Archaea. Halobacteriaceae represent a large part of halophilic Archaea, along with members in two other methanogenic families, Methanosarcinaceae and Methanocalculaceae. The family consists of many diverse genera that can survive extreme environmental niches. Most commonly, Halobacteriaceae are found in hypersaline lakes and can even tolerate sites polluted by heavy metals. They include neutrophiles, acidophiles, alkaliphiles, and there have even been psychrotolerant species discovered. Some members have been known to live aerobically, as well as anaerobically, and they come in many different morphologies. These diverse morphologies include rods in genus Halobacterium, cocci in Halococcus, flattened discs or cups in Haloferax, and other shapes ranging from flattened triangles in Haloarcula to squares in Haloquadratum, and Natronorubrum. Most species of Halobacteriaceae are best known for their high salt tolerance and red-pink pigmented members, but there are also non-pigmented species and those that require moderate salt conditions. Some species of Halobacteriaceae have been shown to exhibit phosphorus solubilizing activities that contribute to phosphorus cycling in hypersaline environments. Techniques such as 16S rRNA analysis and DNA-DNA hybridization have been major contributors to taxonomic classification in Halobacteriaceae, partly due to the difficulty in culturing halophilic Archaea.

<span class="mw-page-title-main">Halobacteriales</span> Order of archaea

Halobacteriales are an order of the Halobacteria, found in water saturated or nearly saturated with salt. They are also called halophiles, though this name is also used for other organisms which live in somewhat less concentrated salt water. They are common in most environments where large amounts of salt, moisture, and organic material are available. Large blooms appear reddish, from the pigment bacteriorhodopsin. This pigment is used to absorb light, which provides energy to create ATP. Halobacteria also possess a second pigment, halorhodopsin, which pumps in chloride ions in response to photons, creating a voltage gradient and assisting in the production of energy from light. The process is unrelated to other forms of photosynthesis involving electron transport; however, and halobacteria are incapable of fixing carbon from carbon dioxide.

<span class="mw-page-title-main">Haloarchaea</span> Class of salt-tolerant archaea

Haloarchaea are a class of the Euryarchaeota, found in water saturated or nearly saturated with salt. Halobacteria are now recognized as archaea rather than bacteria and are one of the largest groups. The name 'halobacteria' was assigned to this group of organisms before the existence of the domain Archaea was realized, and while valid according to taxonomic rules, should be updated. Halophilic archaea are generally referred to as haloarchaea to distinguish them from halophilic bacteria.

<span class="mw-page-title-main">Acidilobales</span> Order of archaea

Acidilobales are an order of archaea in the class Thermoprotei.

In taxonomy, the Ferroplasmaceae are a family of the Thermoplasmatales.

The Pyrodictiaceae are a family of disc-shaped anaerobic microorganisms belonging to the order Desulfurococcales, in the domain Archaea. Members of this family are distinguished from the other family (Desulfurococcaceae) in the order Desulfurococcales by having an optimal growth temperature above 100 °C, rather than below 100 °C.

<i>Haloarcula</i> Genus of archaea

Haloarcula is a genus of extreme halophilic Archaea in the class of Halobactaria.

<i>Haloferax</i> Genus of archaea

In taxonomy, Haloferax is a genus of the Haloferacaceae.

In taxonomy, Halogeometricum is a genus of the Haloferacaceae.

<i>Methanobacterium</i> Genus of archaea

Methanobacterium is a genus of the Methanobacteriaceae family of Archaea. Despite the name, this genus belongs not to the bacterial domain but the archaeal domain. Methanobacterium are nonmotile and live without oxygen. Some members of this genus can use formate to reduce methane; others live exclusively through the reduction of carbon dioxide with hydrogen. They are ubiquitous in some hot, low-oxygen environments, such as anaerobic digestors, their wastewater, and hot springs.

Halopiger is a genus of archaeans in the family Natrialbaceae that have high tolerance to salinity.

In taxonomy, Natrialba is a genus of the Natrialbaceae. The genus consists of many diverse species that can survive extreme environmental niches, especially they are capable to live in the waters saturated or nearly saturated with salt (halophiles). They have certain adaptations to live within their salty environments. For example, their cellular machinery is adapted to high salt concentrations by having charged amino acids on their surfaces, allowing the cell to keep its water molecules around these components. The osmotic pressure and these amino acids help to control the amount of salt within the cell.

Natronorubrum is a genus in the family Halobacteriaceae.

The Selenomonadales are an order of bacteria within the class Negativicutes; unlike most other members of Bacillota, they are Gram-negative. The phylogeny of this order was initially determined by 16S rRNA comparisons. More recently, molecular markers in the form of conserved signature indels (CSIs) have been found specific for all Selenomonadales species. On the basis of these markers, the Selenomonadales are inclusive of two distinct families, and are no longer the sole order within the Negativicutes. Several CSIs have also been found specific for both families, Sporomusaceae and Selenomonadceae. Samples of bacterial strains within this order have been isolated from the root canals of healthy human teeth.

<i>Carboxydocella</i> Genus of bacteria

Carboxydocella is a Gram-positive and obligate anaerobe bacterial genus from the family of Syntrophomonadaceae.

Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.

Haloferacales is an order of halophilic, chemoorganotrophic or heterotrophic archaea within the class Haloarchaea. The type genus of this order is Haloferax.

Halorubraceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Halorubrum. Its biochemical characteristics are the same as the order Haloferacales.

Haloarculaceae is a family of halophilic and mostly chemoorganotrophic archaea within the order Halobacteriales. The type genus of this family is Haloarcula. Its biochemical characteristics are the same as the order Halobacteriales.

Halococcaceae is a family of halophilic and mostly chemoorganotrophic archaea within the order Halobacteriales. The type genus of this family is Halococcus. Its biochemical characteristics are the same as the order Halobacteriales.

References

  1. 1 2 Gupta, Radhey S.; Naushad, Sohail; Baker, Sheridan (2015-03-01). "Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov". International Journal of Systematic and Evolutionary Microbiology. 65 (Pt_3): 1050–1069. doi: 10.1099/ijs.0.070136-0 . ISSN   1466-5026. PMID   25428416.
  2. Grant, William D.; Kamekura, Masahiro; McGenity, Terry J.; Ventosa, Antonio (2015-09-14). "Halobacteria class. nov". Bergey's Manual of Systematics of Archaea and Bacteria: 1. doi:10.1002/9781118960608.cbm00026. ISBN   9781118960608.
  3. Oren, Aharon (2012-02-01). "Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics". International Journal of Systematic and Evolutionary Microbiology. 62 (2): 263–271. doi: 10.1099/ijs.0.038653-0 . ISSN   1466-5026. PMID   22155757.
  4. 1 2 "Family: Haloferacaceae". lpsn.dsmz.de. Retrieved 2021-06-27.
  5. J.P. Euzéby. "Haloferacaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
  6. Sayers; et al. "Haloferacaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
  7. "The LTP" . Retrieved 20 November 2023.
  8. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  9. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  10. "GTDB release 07-RS207". Genome Taxonomy Database . Retrieved 20 June 2022.
  11. "ar53_r207.sp_labels". Genome Taxonomy Database . Retrieved 20 June 2022.
  12. "Taxon History". Genome Taxonomy Database . Retrieved 20 June 2022.