Haloferax

Last updated

Haloferax
Haloferax mediterranei SEM.png
SEM image of Haloferax mediterranei .
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Archaea
Kingdom: Methanobacteriati
Phylum: Methanobacteriota
Class: Halobacteria
Order: Haloferacales
Family: Haloferacaceae
Genus: Haloferax
Torreblanca et al. 1986 [1]
Type species
Haloferax volcanii
(Mullakhanbhai & Larsen 1975) Torreblanca et al. 1986
Species

See text

Haloferax (common abbreviation: Hfx.) is a genus of halobacteria in the order Haloferacaceae. [2]

Contents

Genetic exchange

Cells of H. mediterranei and cells of the related species H. volcanii can undergo a process of genetic exchange between two cells which involves cell fusion resulting in a heterodiploid cell (containing two different chromosomes in one cell). [3] Although this genetic exchange ordinarily occurs between two cells of the same species, it can also occur at a lower frequency between an H. mediterranei and an H. volcani cell. These two species have an average nucleotide sequence identity of 86.6%. [3] During this exchange process, a diploid cell is formed that contains the full genetic repertoire of both parental cells, and genetic recombination is facilitated. Subsequently, the cells separate, giving rise to recombinant cells.

Taxonomy

As of 2022, 13 species are validly published under the genus Haloferax. [1]

Proposed species

Several species and novel binomial names have been proposed, but not validly published.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI). [2]

16S rRNA based LTP_10_2024 [10] [11] [12] 53 marker proteins based GTDB 10-RS226 [13] [14] [15]
Haloferax

H. namakaokahaiaeMcDuff et al. 2017

Haloferax

H. elongans Allen et al. 2008

H. larsenii Xu et al. 2007

H. litoreumCho et al. 2025

"H. profundi" Zhang et al. 2020

H. marinisediminisCho et al. 2025

H. marinumCho et al. 2025

H. mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987

H. mucosum Allen et al. 2008

H. gibbonsii Juez et al. 1986

H. prahovense Enache et al. 2007

"H. marisrubri" Zhang et al. 2020

H. denitrificans (Tomlinson et al. 1986) Tindall et al. 1989 [incl. H. sulfurifontis ]

"H. massiliensis" Khelaifia & Raoult 2016

H. volcanii (Mullakhanbhai & Larsen 1975) Torreblanca et al. 1986
[incl. H. alexandrinus , H. lucentense ]

Unassigned Haloferax:

Industrial biotechnology

Several Haloferax species, especially Haloferax mediterranei have gained eminence for their ability to serve as an efficient chassis for bioproduction. H. mediterranei is a well-known producer of polyhydroxyalkanoates, a sustainable and biodegradable bioplastic. [16] They have been studied for the production of several value-added products such as bioplastics, pigments and exoenzymes. [17] H. mediterranei is capable of accumulating high amounts of both homopolymer PHAs and co-polymer PHAs from a wide array of sustainable carbon substrates. [16] [18] Haloferax species have also been used to produce industrially relevant exoenzymes such as laccase for bioprocessing. [19] Since they can thrive in extreme conditions of salinity, toxicity, heavy metal exposure and UV radiation, the fermentation costs are significantly lowered as the chance of contamination is reduced. [17] In hypersaline environments like the Dead Sea & Great Salt Lake, Haloferax species shoulder most of the responsibility of denitrification. [20] These strains could be leveraged for nitrogen removal systems designed to remediate saline effluents from fisheries, textile industries and food processing plants.

See also

References

  1. 1 2 3 J.P. Euzéby. "Haloferax". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-10-10.
  2. 1 2 Sayers; et al. "Haloferax". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-10-10.
  3. 1 2 Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U (August 2012). "Low species barriers in halophilic archaea and the formation of recombinant hybrids". Curr. Biol. 22 (15): 1444–8. doi: 10.1016/j.cub.2012.05.056 . PMID   22748314.
  4. EBA - European Nucleotide Archive , retrieved 2022-07-14
  5. NCBI Taxonomy browser (Haloferax antrum) , retrieved 2022-07-14
  6. NCBI Taxonomy browser (Haloferax berberensis) , retrieved 2022-07-14
  7. "LPSN - List of Prokaryotic names with Standing in Nomenclature". Deutsche Sammlung von Mikroorganismen und Zellkulturen . Retrieved 2022-07-14.
  8. "LPSN - List of Prokaryotic names with Standing in Nomenclature". Deutsche Sammlung von Mikroorganismen und Zellkulturen . Retrieved 2022-07-14.
  9. "LPSN - List of Prokaryotic names with Standing in Nomenclature". Deutsche Sammlung von Mikroorganismen und Zellkulturen . Retrieved 2022-07-14.
  10. "The LTP" . Retrieved 10 December 2024.
  11. "LTP_all tree in newick format" . Retrieved 10 December 2024.
  12. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  13. "GTDB release 10-RS226". Genome Taxonomy Database . Retrieved 1 May 2025.
  14. "ar53_r226.sp_label". Genome Taxonomy Database . Retrieved 1 May 2025.
  15. "Taxon History". Genome Taxonomy Database . Retrieved 1 May 2025.
  16. 1 2 Parroquin-Gonzalez, Mariana; Winterburn, James (2023-09-13). "Continuous bioreactor production of polyhydroxyalkanoates in Haloferax mediterranei". Frontiers in Bioengineering and Biotechnology. 11. doi:10.3389/fbioe.2023.1220271. ISSN   2296-4185.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  17. 1 2 Griffiths, Dana B.; Tiwari, Ravi P.; Murphy, Daniel V.; Scott, Colin (November 2025). "Haloferax and the Haloferacaceae: Potential role in bioindustry". Biotechnology Advances. 84: 108666. doi:10.1016/j.biotechadv.2025.108666. ISSN   1873-1899. PMID   40744239.{{cite journal}}: CS1 maint: article number as page number (link)
  18. Wang, Ke; Zhang, Ruihong (2021-02-28). "Production of Polyhydroxyalkanoates (PHA) by Haloferax mediterranei from Food Waste Derived Nutrients for Biodegradable Plastic Applications". Journal of Microbiology and Biotechnology. 31 (2): 338–347. doi:10.4014/jmb.2008.08057. ISSN   1738-8872. PMC   9706037 . PMID   33203825.
  19. Kasirajan, Lakshmi; Adams, Zachary; Couto-Rodriguez, Ricardo L.; Gal, Daniel; Jia, Huiyong; Mondragon, Paula; Wassel, Paul C.; Yu, David; Uthandi, Sivakumar; Maupin-Furlow, Julie A. (2021). "High-level synthesis and secretion of laccase, a metalloenzyme biocatalyst, by the halophilic archaeon Haloferax volcanii". Methods in Enzymology. 659: 297–313. doi:10.1016/bs.mie.2021.05.012. ISSN   1557-7988. PMC   8867731 . PMID   34752290.
  20. Torregrosa-Crespo, Javier; Pire, Carmen; Martínez-Espinosa, Rosa María; Bergaust, Linda (2019). "Denitrifying haloarchaea within the genus Haloferax display divergent respiratory phenotypes, with implications for their release of nitrogenous gases". Environmental Microbiology. 21 (1): 427–436. doi:10.1111/1462-2920.14474. ISSN   1462-2920.

Further reading