Methanobrevibacter

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Methanobrevibacter
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Archaea
Kingdom: Euryarchaeota
Class: Methanobacteria
Order: Methanobacteriales
Family: Methanobacteriaceae
Genus: Methanobrevibacter
Balch and Wolfe 1981
Type species
Methanobrevibacter ruminantium
(Smith & Hungate 1958) Balch & Wolfe 1981
Species

Methanobrevibacter is a genus of archaeans in the family Methanobacteriaceae. [1] The species within Methanobrevibacter are strictly anaerobic archaea that produce methane, for the most part through the reduction of carbon dioxide via hydrogen. Most species live in the intestines of larger organisms, such as termites and are responsible for the large quantities of greenhouse gases that they produce.

Nomenclature

The name Methanobrevibacter has Latin and Greek roots. Methanum is Latin for methane, brevi is Latin for short, and bacter is Greek for bar. [2]

Professional publications use the abbreviations M., Mbb., and Mbr., as in M. smithii, [3] Mbb. smithii, [4] and Mbr. smithii. [5]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [6] and National Center for Biotechnology Information (NCBI). [1]

16S rRNA based LTP_06_2022 [7] [8] [9] 53 marker proteins based GTDB 08-RS214 [10] [11] [12]
Methanobrevibacter

M. cuticularis Leadbetter & Breznak 1997

M. curvatus Leadbetter & Breznak 1997

M. filiformis Leadbetter & Breznak 1997

M. olleyae Rea et al. 2007

M. ruminantium (Smith & Hungate 1958) Balch & Wolfe 1981

M. smithii Balch & Wolfe 1981

M. millerae Rea et al. 2007

M. gottschalkii Miller & Lin 2002

M. thaueri Miller & Lin 2002

M. woesei Miller & Lin 2002

M. acididurans Savant et al. 2002

M. arboriphilus corrig. (Zeikus & Henning 1975) Balch & Wolfe 1981

M. boviskoreani Lee et al. 2013

M. wolinii Miller & Lin 2002

See also

Related Research Articles

<span class="mw-page-title-main">Euryarchaeota</span> Phylum of archaea

Euryarchaeota is a phylum of archaea. Euryarchaeota are highly diverse and include methanogens, which produce methane and are often found in intestines; halobacteria, which survive extreme concentrations of salt; and some extremely thermophilic aerobes and anaerobes, which generally live at temperatures between 41 and 122 °C. They are separated from the other archaeans based mainly on rRNA sequences and their unique DNA polymerase.

Chrysiogenaceae is a family of bacteria.

The Thermoprotei is a class of the Thermoproteota.

Methanobacteriales is an order of archaeans in the class Methanobacteria. Species within this order differ from other methanogens in that they can use fewer catabolic substrates and have distinct morphological characteristics, lipid compositions, and RNA sequences. Their cell walls are composed of pseudomurein. Most species are Gram-positive with rod-shaped bodies and some can form long filaments. Most of them use formate to reduce carbon dioxide, but those of the genus Methanosphaera use hydrogen to reduce methanol to methane.

In taxonomy, the Methanococcaceae are a family of the Methanococcales. These organisms produce methane from formate or through the reduction of carbon dioxide with hydrogen. They live in marshes and other coastal areas. Members of the genus Methanothermococcus have been found in deep-sea hydrothermal vents.

In taxonomy, the Methanocorpusculaceae are a family of microbes within the order Methanomicrobiales. It contains exactly one genus, Methanocorpusculum. The species within Methanocorpusculum were first isolated from anaerobic digesters and anaerobic wastewater treatment plants. In the wild, they prefer freshwater environments. Unlike many other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow.

<span class="mw-page-title-main">Methanosarcinaceae</span> Family of archaea

In taxonomy, the Methanosarcinaceae are a family of the Methanosarcinales.

In taxonomy, Methanococcoides is a genus of the Methanosarcinaceae.

<i>Methanohalophilus</i> Genus of archaea

In taxonomy, Methanohalophilus is a genus of the Methanosarcinaceae.

In taxonomy, Methanomethylovorans is a genus of microorganisms with the family Methanosarcinaceae. This genus was first described in 1999. The species within it generally live in freshwater environments, including rice paddies, freshwater sediments and contaminated soil. They produce methane from methanol, methylamines, dimethyl sulfide and methanethiol. With the exception of M. thermophila, which has an optimal growth temperature of 50 °C, these species are mesophiles and do not tend to grow at temperatures above 40 °C.

<i>Methanobacterium</i> Genus of archaea

Methanobacterium is a genus of the Methanobacteria class in the Archaea kingdom, which produce methane as a metabolic byproduct. Despite the name, this genus belongs not to the bacterial domain but the archaeal domain. Methanobacterium are nonmotile and live without oxygen, which is toxic to them, and they only inhabit anoxic environments.

Methanosphaera is a genus of microbes within the family Methanobacteriaceae. It was distinguished from other genera within Methanobacteriaceae in 1985 on the basis of the oligonucleotide sequence of its 16S RNA. Like other archaea within Methanobacteriaceae, those of Methanosphaera are methanogens, but while most use formate to reduce carbon dioxide, those of Methanosphaera use hydrogen to reduce methanol to methane.

<i>Methanothermobacter</i> Genus of archaea

Methanothermobacter is a genus of archaeans in the family Methanobacteriaceae. The species within this genus are thermophilic and grow best at temperatures between 55 °C and 65 °C. They are methanogens; they use carbon dioxide and hydrogen as substrates to produce methane for energy.

Methanocalculus is a genus of the Methanomicrobiales, and is known to include methanogens.

Methanobrevibacter smithii is the predominant archaeon in the microbiota of the human gut. M. smithii has a coccobacillus shape. It plays an important role in the efficient digestion of polysaccharides by consuming the end products of bacterial fermentation. Methanobrevibacter smithii is a single-celled microorganism from the Archaea domain. M. smithii is a methanogen, and a hydrogenotroph that recycles the hydrogen by combining it with carbon dioxide to methane. The removal of hydrogen by M. smithii is thought to allow an increase in the extraction of energy from nutrients by shifting bacterial fermentation to more oxidized end products.

The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring Clostridia species also stain gram-negative, the proteins responsible for the unusual diderm structure of the Negativicutes may have actually been laterally acquired from Pseudomonadota. Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes.

The Cryptosporangiaceae are the only family of the order Cryptosporangiales, which is a part of the phylum Actinomycetota.

The Kineosporiaceae is a family of Gram positive bacteria.

Methanobrevibacter oralis is a methanogenic archaeon species considered to be a member of the human microbiota, mainly associated to the oral cavity. M. oralis is a coccobacillary shaped, single-cell, Gram-positive, non-motile microorganism of the Archaea domain of life. This species has been isolated and sequenced from humans in dental plaque and in their gastrointestinal tract. As a methanogen and a hydrogenotroph, this prokaryote can produce methane by using hydrogen and carbon dioxide as substrates through a process called methanogenesis.

Brucella intermedia is a bacterium from the genus of Brucella. It was first described by Velasco and others in 1998. It causes diseases in humans only rarely, with single case reports of cholangitis following liver transplantation, bacteremia in a patient with bladder cancer, a pelvic abscess after abdominal surgery, dyspepsia, endophthalmitis in the presence of a foreign body, pneumonia, and endocarditis.

References

  1. 1 2 See the NCBI webpage on Methanobrevibacter. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information . Retrieved 2007-03-19.
  2. David R. Boone; Richard W. Castenholz, eds. (2012-01-13). Bergey's Manual of Systematic Bacteriology. Vol. 1 (2 ed.). Nueva York: Springer Science and Business Media. p. 218. doi:10.1007/978-0-387-21609-6. ISBN   978-1-4419-3159-7. S2CID   41426624 . Retrieved 2016-07-24.
  3. R. Mathur; M. Amachai; K.S. Chua; J. Mirocha; G.M. Barlow; M. Pimentel (2013-03-23). "Methane and hydrogen positivity on breath test is associated with greater body mass index and body fat". Journal of Clinical Endocrinology and Metabolism. 98 (4): E698–E702. doi:10.1210/jc.2012-3144. PMC   3615195 . PMID   23533244.
  4. L.C. Skillman; P.N. Evans; C. Strömpl; K.N. Joblin (2006-03-04). "16S rDNA directed PCR primers and detection of methanogens in the bovine rumen". Lett Appl Microbiol. 42 (3): 222–228. doi:10.1111/j.1472-765X.2005.01833.x. PMID   16478508. S2CID   25989690.
  5. Abhijit S. Dighe; Kamlesh Jangid; José M González; Vyankatesh J. Pidiyar; Milind S Patole; Dilip R. Ranade; Yogesh S. Shouche (2004-05-20). "Comparison of 16S rRNA gene sequences of genus Methanobrevibacter". BMC Microbiol. 4: 20. doi: 10.1186/1471-2180-4-20 . PMC   415545 . PMID   15128464.
  6. J.P. Euzéby. "Methanobacteriaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 23 February 2022.
  7. "The LTP" . Retrieved 10 May 2023.
  8. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  9. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  10. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  11. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  12. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading

Scientific journals

Dighe, Abhigit S; Jangid, Kamlesh; Gonzalez, Jose M; Pidiyar, Vyankatesh J; Patole, Milind S; Ranade, Dilip R; Shouche, Yogesh S (May 5, 2004). "Comparison of 16S rRNA gene sequences of genus Methanobrevibacter". BMC Microbiology. 4 (1): 20. doi: 10.1186/1471-2180-4-20 . PMC   415545 . PMID   15128464.