Thermoproteales

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Thermoproteales
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Archaea
Kingdom: Proteoarchaeota
Superphylum: TACK group
Phylum: Thermoproteota
Class: Thermoprotei
Order: Thermoproteales
Zillig & Stetter, 1982
Families
Synonyms
  • "Thermocladiaceae" Rinke et al. 2020
  • Thermofilales Zayulina et al. 2021

Thermoproteales are an order of archaeans in the class Thermoprotei. [1] They are the only organisms known to lack the SSB proteins, instead possessing the protein ThermoDBP that has displaced them. The rRNA genes of these organisms contain multiple introns, which can be homing endonuclease encoding genes, and their presence can impact the binding of "universal" 16S rRNA primers often used in environmental sequencing surveys. [2]

Contents

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [3] and National Center for Biotechnology Information (NCBI) [4]

16S rRNA based LTP_06_2022 [5] [6] [7] 53 marker proteins based GTDB 08-RS214 [8] [9] [10]
Thermoproteales

Thermofilaceae

Thermoproteaceae

Thermofilales

Thermofilaceae

Thermoproteales

"Thermocladiaceae"

Thermoproteaceae

Related Research Articles

<span class="mw-page-title-main">Nanoarchaeota</span> Phylum of archaea

Nanoarchaeota is a proposed phylum in the domain Archaea that currently has only one representative, Nanoarchaeum equitans, which was discovered in a submarine hydrothermal vent and first described in 2002.

<span class="mw-page-title-main">Thermoproteota</span> Phylum of archaea

The Thermoproteota are prokaryotes that have been classified as a phylum of the Archaea domain. Initially, the Thermoproteota were thought to be sulfur-dependent extremophiles but recent studies have identified characteristic Thermoproteota environmental rRNA indicating the organisms may be the most abundant archaea in the marine environment. Originally, they were separated from the other archaea based on rRNA sequences; other physiological features, such as lack of histones, have supported this division, although some crenarchaea were found to have histones. Until recently all cultured Thermoproteota had been thermophilic or hyperthermophilic organisms, some of which have the ability to grow at up to 113°C. These organisms stain Gram negative and are morphologically diverse, having rod, cocci, filamentous and oddly-shaped cells.

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

The Thermoprotei is a class of the Thermoproteota.

<span class="mw-page-title-main">Acidilobales</span> Order of archaea

Acidilobales are an order of archaea in the class Thermoprotei.

In taxonomy, the Methanococcales are an order of the Methanococci.

<span class="mw-page-title-main">Thermococcales</span> Order of archaea

In taxonomy, the Thermococcales are an order of microbes within the Thermococci. The species within the Thermococcales are used in laboratories as model organisms. All these species are strict anaerobes and can ferment sugars as sources of carbon, but they also need elemental sulfur.

The Pyrodictiaceae are a family of disc-shaped anaerobic microorganisms belonging to the order Desulfurococcales, in the domain Archaea. Members of this family are distinguished from the other family (Desulfurococcaceae) in the order Desulfurococcales by having an optimal growth temperature above 100 °C, rather than below 100 °C.

Thermofilaceae are a family of archaea in the order Thermoproteales.

In taxonomy, the Thermoproteaceae are a family of the Thermoproteales.

In taxonomy, Caldivirga is a genus of the Thermoproteaceae.

Pyrobaculum is a genus of the Thermoproteaceae.

In taxonomy, Thermocladium is a genus of the Thermoproteaceae.

In taxonomy, Vulcanisaeta is a genus of the Thermoproteaceae.

<i>Acidianus</i> Genus of archaea

In taxonomy, Acidianus is a genus of the Sulfolobaceae.

<i>Acidilobus</i> Genus of archaea

Acidilobus is a genus of archaea in the family Acidilobaceae.

In taxonomy, Sulfophobococcus is a genus of the Desulfurococcaceae.

Thermodiscus is a genus of archaea in the family Desulfurococcaceae. The only species is Thermodiscus maritimus.

Thermosphaera is a genus of the Desulfurococcaceae. They are a group of prokaryotic organisms which have been discovered in extremely hot environments such as sulfur springs, volcanoes, and magma pools. Isolates of Thermosphaera were first identified in 1998 from the Obsidian Pool in Yellowstone National Park.

Thermofilum is a genus of archaea in the family Thermofilaceae.

References

  1. See the NCBI webpage on Thermoproteales. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information . Retrieved 2007-03-19.
  2. Jay ZJ and Inskeep WP. (July 2015). "The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales". Biology Direct. 10 (35): 35. doi: 10.1186/s13062-015-0065-6 . PMC   4496867 . PMID   26156036.
  3. J.P. Euzéby. "Thermoproteales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-05-10.
  4. Sayers; et al. "Thermoproteaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-05-10.
  5. "The LTP" . Retrieved 10 May 2023.
  6. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  7. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  8. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  9. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading