Pyrococcus

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Pyrococcus
Pyrococcus furiosus.png
Pyrococcus furiosus
Scientific classification
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Pyrococcus

Fiala and Stetter 1986
Type species
Pyrococcus furiosus
Fiala and Stetter 1986
Species

Pyrococcus is a genus of Thermococcaceaen archaean. [1]

Contents

Description and significance

Pyrococcus has similar characteristics of other thermoautotrophican archaea such as Archaeoglobus , and Methanococcus in the respect that they are all thermophilic and anaerobic. Pyrococcus differs, however, because its optimal growth temperature is nearly 100 °C and dwells at a greater sea depth than the other archaea. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.

Phylogeny

16S rRNA based LTP_06_2022 [2] [3] [4] 53 marker proteins based GTDB 08-RS214 [5] [6] [7]
Pyrococcus

P. yayanosii

P. horikoshii

P. furiosus

P. woesei Zillig et al. 1988

P. kukulkanii

" P. chitonophagus "

P. glycovoransBarbier et al. 1999

Pyrococcus

P. yayanosiiBirrien et al. 2011

P. furiosus Fiala & Stetter 1986

" P. abyssi " Erauso et al. 1993

P. horikoshii Gonzlez et al. 1999

P. kukulkaniiCallac et al. 2016

" P. chitonophagus " (Huber & Stetter 1996) Lepage et al. 2004

Genome structure

Three of the Pyrococcus species have been sequenced. P. furiosus is the largest containing 1.9 Mb followed by P. abyssi with 1.8 Mb and P. horikoshii with 1.7 Mb.[ citation needed ] The genomes encode for many different metabolic enzymes which gives themselves a wider spectrum of living conditions because they can transport and metabolize a wide range of organic substances. Variation was detected between species as well.

Cell structure and metabolism

The cells of Pyrococcus are about 0.8–2 μm and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of So. [ citation needed ]

Ecology

Pyrococcus species inhabit environments with extremely high temperatures such as hydrothermal vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98 °C. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of Hydrothermal vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature.

See also

Related Research Articles

<span class="mw-page-title-main">Karl Stetter</span> German microbiologist

Karl Otto Stetter is a German microbiologist and authority on astrobiology. Stetter is an expert on microbial life at high temperatures.

Archaeoglobus is a genus of the phylum Euryarchaeota. Archaeoglobus can be found in high-temperature oil fields where they may contribute to oil field souring.

In taxonomy, the Picrophilaceae are a family of microbes within Thermoplasmatales.

<i>Pyrococcus furiosus</i> Species of archaeon

Pyrococcus furiosus is a heterotrophic, strictly anaerobic, extremophilic, model species of archaea. It is classified as a hyperthermophile because it thrives best under extremely high temperatures, and is notable for having an optimum growth temperature of 100 °C. P. furiosus belongs to the Pyrococcus genus, most commonly found in extreme environmental conditions of hydrothermal vents. It is one of the few prokaryotic organisms that has enzymes containing tungsten, an element rarely found in biological molecules.

Thermoproteus is a genus of archaeans in the family Thermoproteaceae. These prokaryotes are thermophilic sulphur-dependent organisms related to the genera Sulfolobus, Pyrodictium and Desulfurococcus. They are hydrogen-sulphur autotrophs and can grow at temperatures of up to 95 °C.

Methanococcus is a genus of coccoid methanogens of the family Methanococcaceae. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaeal genome to be completely sequenced, revealing many novel and eukaryote-like elements.

<span class="mw-page-title-main">Thermococci</span> Class of archaea

In taxonomy, the Thermococci are a class of microbes within the Euryarchaeota.

<span class="mw-page-title-main">Sulfolobaceae</span> Family of archaea

Sulfolobaceae are a family of the Sulfolobales belonging to the domain Archaea. The family consists of several genera adapted to survive environmental niches with extreme temperature and low pH conditions.

<span class="mw-page-title-main">Thermococcaceae</span> Family of archaea

In taxonomy, the Thermococcaceae are a family of the Thermococcales. Almost all species within the three genera of Thermococcaceae were isolated from hydrothermal vents in the ocean. All are strictly anaerobes.

Methanocaldococcus formerly known as Methanococcus is a genus of coccoid methanogen archaea. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaean genome to be completely sequenced, revealing many novel and eukaryote-like elements.

Pyrobaculum is a genus of the Thermoproteaceae.

Sulfurisphaera is a genus of the Sulfolobaceae.

In taxonomy, Palaeococcus is a genus of the Thermococcaceae.

In taxonomy, Thermococcus is a genus of thermophilic Archaea in the family the Thermococcaceae.

<i>Acidilobus</i> Genus of archaea

Acidilobus is a genus of archaea in the family Acidilobaceae.

<i>Methanobacterium</i> Genus of archaea

Methanobacterium is a genus of the Methanobacteria class in the Archaea kingdom, which produce methane as a metabolic byproduct. Despite the name, this genus belongs not to the bacterial domain but the archaeal domain. Methanobacterium are nonmotile and live without oxygen, which is toxic to them, and they only inhabit anoxic environments.

In taxonomy, Methanofollis is a genus of the Methanomicrobiaceae.

Thermococcus kodakarensis is a species of thermophilic archaea. The type strain T. kodakarensis KOD1 is one of the best-studied members of the genus.

<i>Pyrococcus abyssi</i> Species of archaeon

Pyrococcus abyssi is a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the North Fiji Basin at 2,000 metres (6,600 ft). It is anaerobic, sulfur-metabolizing, gram-negative, coccus-shaped and highly motile. Its optimum growth temperature is 96 °C (205 °F). Its type strain is GE5. Pyrococcus abyssi has been used as a model organism in studies of DNA polymerase. This species can also grow at high cell densities in bioreactors.

<span class="mw-page-title-main">TACK</span> Clade of Archaea

TACK is a group of archaea, its name an acronym for Thaumarchaeota, Aigarchaeota, Crenarchaeota, and Korarchaeota, the first groups discovered. They are found in different environments ranging from acidophilic thermophiles to mesophiles and psychrophiles and with different types of metabolism, predominantly anaerobic and chemosynthetic. TACK is a clade that is sister to the Asgard branch that gave rise to the eukaryotes. It has been proposed that the TACK clade be classified as Crenarchaeota and that the traditional "Crenarchaeota" (Thermoproteota) be classified as a class called "Sulfolobia", along with the other phyla with class rank or order. After including the kingdom category into ICNP, the proposed name of this group is kingdom Thermoproteati.

References

  1. See the NCBI webpage on Pyrococcus. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information . Retrieved 2007-03-19.
  2. "The LTP" . Retrieved 10 May 2023.
  3. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  4. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  5. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  6. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  7. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading