Natrinema

Natrinema
Scientific classification
Domain:	Archaea
Kingdom:	Methanobacteriati
Phylum:	Halobacteriota
Class:	Halobacteria
Order:	Natrialbales
Family:	Natrialbaceae
Genus:	Natrinema McGenity et al. 1998 [1]
Type species
Natrinema pellirubrum McGenity et al. 1998
Species
See text

Natrinema (common abbreviation Nnm.) is a genus of the Natrialbaceae. ^[2]

Taxonomy

As of 2022, there are 18 species validly published in the genus Natrinema. ^[1]

Natrinema is related to the genus Haloterrigena , established in 1999, resulting in confusion about taxon limits and several species apparently being assigned to the wrong genus. ^[3] Based on phylogenomic analysis, eight species from Haloterrigena as well as Halopiger salifodinae were transferred to Natrinema in 2022. ^[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) ^[1] and National Center for Biotechnology Information (NCBI). ^[2]

16S rRNA based LTP_10_2024 [5] [6] [7]

53 marker proteins based GTDB 09-RS220 [8] [9] [10]

Natrinema 2 N. hispanicum N. limicola Natrinema 3 N. versiforme "N. marinum" N. thermotolerans N. mahii N. saccharevitans Natrinema s.s. N. amylolyticum N. salinisoli N. salsiterrestre N. gari N. altunense N. pellirubrum N. pallidum Natrinema 4 N. salaciae N. soli "N. zhouii" N. ejinorense N. longum (Cui et al. 2006) de la Haba et al. 2022 Natrinema 5 N. halophilum "N. caseinilyticum" "N. gelatinilyticum" Natronorubrum

Natronolimnohabitans Haloterrigena Natronorubrum Natrinema N. salifodinae(Zhang et al. 2013) de la Haba et al. 2022 "N. marinum" Hu et al. 2023 N. halophilumBao et al. 2022 "N. caseinilyticum" Hu et al. 2023 "N. gelatinilyticum" Hu et al. 2023 N. hispanicum (Romano et al. 2007) de la Haba et al. 2022 N. limicola (Cui et al. 2006) Rinke et al. 2020 N. mahii(Ding et al. 2017) de la Haba et al. 2022 N. saccharevitans (Xu et al. 2005) Rinke et al. 2020 N. pellirubrum McGenity et al. 1998 N. thermotolerans (Montalvo-Rodrguez et al. 2000) Rinke et al. 2020 N. salaciaeAlbuquerque et al. 2012 N. soliRasooli et al. 2017 "N. zhouii" Hu et al. 2023 N. ejinorenseCastillo et al. 2006 N. salinisoliBao et al. 2022 N. salsiterrestreStraková et al. 2023 N. versiforme Xin et al. 2000 N. amylolyticumBao et al. 2022 N. gari Tapingkae et al. 2008 N. altunense Xu et al. 2005 N. pallidum McGenity et al. 1998

Note: Unassigned Natrinema

• "N. aidingensis" Liu et al. 2003a
• "N. ajinwuensis" Mahansaria et al. 2018
• "N. xinjiang" Habdin & Tohty 2005
• "N. zhouii" Hu et al. 2023

See also

• List of Archaea genera

References

1. J.P. Euzéby. "Natrinema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-10-10.
2. Sayers; et al. "Natrinema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-10-10.
3. Tindall, B. J. (2003). "Taxonomic problems arising in the genera Haloterrigena and Natrinema". Int. J. Syst. Evol. Microbiol. 53 (Pt 5): 1697–1698. Published online 28 February 2003. doi:10.1099/ijs.0.02529-0. PMID   13130070.
4. de la Haba, Rafael; Minegishi, Hiroaki; Kamekura, Masahiro; Shimane, Yasuhiro; Ventosa, Antonio (2021). "Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena". Frontiers in Microbiology. 12: 740909. doi: 10.3389/fmicb.2021.740909 . PMC   8530250 . PMID   34690986.
5. "The LTP" . Retrieved 10 December 2024.
6. "LTP_all tree in newick format" . Retrieved 10 December 2024.
7. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
8. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
9. "ar53_r220.sp_label". Genome Taxonomy Database . Retrieved 10 May 2024.
10. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.

Further reading

Scientific journals

• Xin H; Itoh T; Zhou P; Suzuki K; et al. (2000). "Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China". Int. J. Syst. Evol. Microbiol. 50 (3): 1297–1303. doi: 10.1099/00207713-50-3-1297 . PMID   10843075.
• Oren A; Ventosa A (2000). "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia". Int. J. Syst. Evol. Microbiol. 50 (3): 1405–1407. doi: 10.1099/00207713-50-3-1405 . PMID   10843089.
• McGenity TJ; Gemmell RT; Grant WD (1998). "Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov". Int. J. Syst. Bacteriol. 48 (4): 1187–1196. doi: 10.1099/00207713-48-4-1187 . PMID   9828420.
• Feng, Jie; Wang, Jian; Du, Xin; Tang, Wei; et al. (Mar 2014). "Proteomic Analysis of the Secretome of Haloarchaeon Natrinema sp. J7−2". Journal of Proteome Research. 13 (3): 1248–1258. doi:10.1021/pr400728x. PMID   24512091.^{[ permanent dead link ‍]}

Scientific books

• Gibbons, NE (1974). "Family V. Halobacteriaceae fam. nov.". In RE Buchanan; NE Gibbons (eds.). Bergey's Manual of Determinative Bacteriology (8th ed.). Baltimore: The Williams & Wilkins Co.