Monosaccharide nomenclature

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Monosaccharide nomenclature is the naming system of the building blocks of carbohydrates, the monosaccharides, which may be monomers or part of a larger polymer. Monosaccharides are subunits that cannot be further hydrolysed in to simpler units. Depending on the number of carbon atom they are further classified into trioses, tetroses, pentoses, hexoses etc., which is further classified in to aldoses and ketoses depending on the type of functional group present in them. [1]

Contents

Systematic name of molecular graph

The elementary formula of a simple monosaccharide is CnH2nOn, where the integer n is at least 3 and rarely greater than 7. Simple monosaccharides may be named generically based on the number of carbon atoms n: trioses, tetroses, pentoses, hexoses, etc.

Every simple monosaccharide has an acyclic (open chain) form, which can be written as ; that is, a straight chain of carbon atoms, one of which is a carbonyl group, all the others bearing a hydrogen -H and a hydroxyl -OH each, with one extra hydrogen at either end. The carbons of the chain are conventionally numbered from 1 to n, starting from the end which is closest to the carbonyl.

If the carbonyl is at the very beginning of the chain (carbon 1), the monosaccharide is said to be an aldose, otherwise it is a ketose. These names can be combined with the chain length prefix, as in aldohexose or ketopentose. Most ketoses found in nature have the carbonyl in position 2; when that is not the case, one uses a numeric prefix to indicate the carbonyl's position. Thus for example, aldohexose means H(C=O)(CHOH)5H, ketopentose means H(CHOH)(C=O)(CHOH)3H, and 3-ketopentose means H(CHOH)2(C=O)(CHOH)2H.

An alternative nomenclature uses the suffix '-ose' only for aldoses, and '-ulose' for ketoses. The position of the carbonyl (when it is not 1 or 2) is indicated by a numerical infix. For example, hexose in this nomenclature means H(C=O)(CHOH)5H, pentulose means H(CHOH)(C=O)(CHOH)3H, and hexa-3-ulose means H(CHOH)2(C=O)(CHOH)3H.

Naming of acyclic stereoisomers

Open-chain monosaccharides with same molecular graph may exist as two or more stereoisomers. The Fischer projection is a systematic way of drawing the skeletal formula of an open-chain monosaccharide so that each stereoisomer is uniquely identified.

Two isomers whose molecules are mirror-images of each other are identified by prefixes 'D-' or 'L-', according to the handedness of the chiral carbon atom that is farthest from the carbonyl. In the Fischer projection, that is the second carbon from the bottom; the prefix is 'D-' or 'L-' according to whether the hydroxyl on that carbon lies to the right or left of the backbone, respectively.

If the molecular graph is symmetrical (H(CHOH)x(CO)(CHOH)xH) and the two halves are mirror images of each other, then the molecule is identical to its mirror image, and there is no 'L-' form.

A distinct common name, such as "glucose" or "ribose", is traditionally assigned to each pair of mirror-image stereoisomers, and to each achiral stereoisomer. These names have standard three-letter abbreviations, such as 'Glc' for glucose and 'Rib' for ribose.

Another nomenclature uses the systematic name of the molecular graph, a 'D-' or 'L-' prefix to indicate the position of the last chiral hydroxyl on the Fischer diagram (as above), and another italic prefix to indicate the positions of the remaining hydroxyls relative to the first one, read from bottom to top in the diagram, skipping the keto group if any. These prefixes are attached to the systematic name of the molecular graph. So for example, D-glucose is D-gluco-hexose, D-ribose is D-ribo-pentose, and D-psicose is D-ribo-hexulose. Note that, in this nomenclature, mirror-image isomers differ only in the 'D'/'L' prefix, even though all their hydroxyls are reversed.

Acyclic sugars.png

The following tables shows the Fischer projections of selected monosaccharides (in open-chain form), with their conventional names. The table shows all aldoses with 3 to 6 carbon atoms, and a few ketoses. For chiral molecules, only the 'D-' form (with the next-to-last hydroxyl on the right side) is shown; the corresponding forms have mirror-image structures. Some of these monosaccharides are only synthetically prepared in the laboratory and not found in nature.

Names of aldoses

Aldotrioses
Trioses
DGlyceraldehyde Fischer.svg
D-Glyceraldehyde
 
 
Aldotetroses
Tetroses
DErythrose Fischer.svg
D-Erythrose
erythro-
Ery [2]
DThreose Fischer.svg
D-Threose
threo-
Tho
Aldopentoses
Pentoses
DRibose Fischer.svg
D-Ribose
ribo-
Rib
DArabinose Fischer.svg
D-Arabinose
arabino-
Ara
DXylose Fischer.svg
D-Xylose
xylo-
Xyl
DLyxose Fischer.svg
D-Lyxose
lyxo-
Lyx
Aldohexoses
Hexoses
DAllose Fischer.svg
D-Allose
allo-
All
DAltrose Fischer.svg
D-Altrose
altro-
Alt
DGlucose Fischer.svg
D-Glucose
gluco-
Glc
Mannose.svg
D-Mannose
manno-
Man
DGulose Fischer.svg
D-Gulose
gulo-
Gul
DIdose Fischer.svg
D-Idose
ido-
Ido
DGalactose Fischer.svg
D-Galactose
galacto-
Gal
DTalose Fischer.svg
D-Talose
talo-
Tal

Names of ketoses

Ketotrioses
Triuloses
Dihydroxyacetone Fischer.svg
Glycerone
 
 
Ketotetrose
Tetruloses
DErythrulose Fischer.svg
D-Erythrulose
erythrulo-
 
Ketopentoses
Pentuloses
DRibulose Fischer.svg
D-Ribulose
ribulo-
Rul
DXylulose Fischer.svg
D-Xylulose
xylulo-
Xul
Ketohexoses
Hexuloses
DPsicose Fischer.svg
D-Psicose
psico-
Psi
DFructose Fischer.svg
D-Fructose
fructo-
Fru
DSorbose Fischer.svg
D-Sorbose
sorbo-
Sor
DTagatose Fischer.svg
D-Tagatose
tagato-
Tag

Names of 3-ketoses

3-Ketopentoses
Penta-3-uloses

SYM-3-Ketopentose
 
 

D-UNS-3-Ketopentose
 
 
3-Ketohexoses
Hexa-3-uloses

D-RRR-3-Ketohexose
 
 

D-RRL-3-Ketohexose
 
 

D-RLR-3-Ketohexose
 
 

D-RLL-3-Ketohexose
 
 

D-LRR-3-Ketohexose
 
 

D-LRL-3-Ketohexose
 
 

D-LLR-3-Ketohexose
 
 

D-LLL-3-Ketohexose
 
 

Cyclic forms

For monosaccharides in their cyclic form, an infix is placed before the '-ose', '-ulose', or 'n-ulose' suffix to specify the ring size. The infix is "furan" for a 5-atom ring, "pyran" for 6, "septan" for 7, and so on.

Ring closure creates another chiral center at the anomeric carbon (the one with the hemiacetal or acetal functionality), and therefore each open-chain stereoisomer gives rise to two distinct stereoisomers (anomers). These are identified by the prefixes 'α-' and 'β-', which denote the relative configuration of the anomeric carbon to that of the stereocenter at the other end of the carbon chain. If the conformation (R or S) is identical at both the anomeric carbon and the most distant stereocenter, the configuration is 'α-'. If the conformations are different, the configuration is 'β-' [3]

Examples

Cyclic sugars.png

Glycosides

Glycosides are saccharides in which the hydroxyl -OH at the anomeric centre is replaced by an oxygen-bridged group -OR. The carbohydrate part of the molecule is called glycone, the -O- bridge is the glycosisdic oxygen, and the attached group is the aglycone. Glycosides are named by giving the aglyconic alcohol HOR, followed by the saccharide name with the '-e' ending replaced by '-ide'; as in [[phenol D-glucopyranoside]].

Glycoside.png
Glucosaide eg.png

Modified sugars

Modification of sugar is generally done by replacing one or more –OH group with other functional groups at all positions except C-1.

Rules for nomenclature of modified sugars:

Examples

Modified sugar.png

Protected sugars

Sugars in which –OH is protected by some modification are called protected sugars.

Rules for nomenclature for protected sugars:

Protected.png

See also

Related Research Articles

<span class="mw-page-title-main">Carbohydrate</span> Organic compound that consists only of carbon, hydrogen, and oxygen

A carbohydrate is a biomolecule consisting of carbon (C), hydrogen (H) and oxygen (O) atoms, usually with a hydrogen–oxygen atom ratio of 2:1 and thus with the empirical formula Cm(H2O)n, which does not mean the H has covalent bonds with O. However, not all carbohydrates conform to this precise stoichiometric definition, nor are all chemicals that do conform to this definition automatically classified as carbohydrates.

Monosaccharides, also called simple sugars, are the simplest forms of sugar and the most basic units (monomers) from which all carbohydrates are built.

In chemistry, a pentose is a monosaccharide with five carbon atoms. The chemical formula of many pentoses is C
5
H
10
O
5
, and their molecular weight is 150.13 g/mol.

Deoxyribose, or more precisely 2-deoxyribose, is a monosaccharide with idealized formula H−(C=O)−(CH2)−(CHOH)3−H. Its name indicates that it is a deoxy sugar, meaning that it is derived from the sugar ribose by loss of a hydroxy group. Discovered in 1929 by Phoebus Levene, deoxyribose is most notable for its presence in DNA. Since the pentose sugars arabinose and ribose only differ by the stereochemistry at C2′, 2-deoxyribose and 2-deoxyarabinose are equivalent, although the latter term is rarely used because ribose, not arabinose, is the precursor to deoxyribose.

<span class="mw-page-title-main">Hexose</span> 6-Carbon simple sugar

In chemistry, a hexose is a monosaccharide (simple sugar) with six carbon atoms. The chemical formula for all hexoses is C6H12O6, and their molecular weight is 180.156 g/mol.

An aldose is a monosaccharide with a carbon backbone chain with a carbonyl group on the endmost carbon atom, making it an aldehyde, and hydroxyl groups connected to all the other carbon atoms. Aldoses can be distinguished from ketoses, which have the carbonyl group away from the end of the molecule, and are therefore ketones.

<span class="mw-page-title-main">Fischer projection</span> Method of representing 3D organic molecules as a 2D image

In chemistry, the Fischer projection, devised by Emil Fischer in 1891, is a two-dimensional representation of a three-dimensional organic molecule by projection. Fischer projections were originally proposed for the depiction of carbohydrates and used by chemists, particularly in organic chemistry and biochemistry. The use of Fischer projections in non-carbohydrates is discouraged, as such drawings are ambiguous and easily confused with other types of drawing. The main purpose of Fischer projections is to show the chirality of a molecule and to distinguish between a pair of enantiomers. Some notable uses include drawing sugars and depicting isomers.

<span class="mw-page-title-main">Diastereomer</span> Molecules which are non-mirror image, non-identical stereoisomers

In stereochemistry, diastereomers are a type of stereoisomer. Diastereomers are defined as non-mirror image, non-identical stereoisomers. Hence, they occur when two or more stereoisomers of a compound have different configurations at one or more of the equivalent (related) stereocenters and are not mirror images of each other. When two diastereoisomers differ from each other at only one stereocenter, they are epimers. Each stereocenter gives rise to two different configurations and thus typically increases the number of stereoisomers by a factor of two.

<span class="mw-page-title-main">Ketose</span> Class of carbohydrates

A ketose is a monosaccharide containing one ketone group per molecule. The simplest ketose is dihydroxyacetone, which has only three carbon atoms. It is the only ketose with no optical activity. All monosaccharide ketoses are reducing sugars, because they can tautomerize into aldoses via an enediol intermediate, and the resulting aldehyde group can be oxidised, for example in the Tollens' test or Benedict's test. Ketoses that are bound into glycosides, for example in the case of the fructose moiety of sucrose, are nonreducing sugars.

<span class="mw-page-title-main">Sugar alcohol</span> Organic compounds

Sugar alcohols are organic compounds, typically derived from sugars, containing one hydroxyl group (–OH) attached to each carbon atom. They are white, water-soluble solids that can occur naturally or be produced industrially by hydrogenating sugars. Since they contain multiple –OH groups, they are classified as polyols.

In carbohydrate chemistry, a pair of anomers is a pair of near-identical stereoisomers or diastereomers that differ at only the anomeric carbon, the carbon that bears the aldehyde or ketone functional group in the sugar's open-chain form. However, in order for anomers to exist, the sugar must be in its cyclic form, since in open-chain form, the anomeric carbon is planar and thus achiral. More formally stated, then, an anomer is an epimer at the hemiacetal/hemiketal carbon in a cyclic saccharide. Anomerization is the process of conversion of one anomer to the other. As is typical for stereoisomeric compounds, different anomers have different physical properties, melting points and specific rotations.

<span class="mw-page-title-main">Reducing sugar</span> Sugars that contain free OH group at the anomeric carbon atom

A reducing sugar is any sugar that is capable of acting as a reducing agent. In an alkaline solution, a reducing sugar forms some aldehyde or ketone, which allows it to act as a reducing agent, for example in Benedict's reagent. In such a reaction, the sugar becomes a carboxylic acid.

Aldaric acids are a group of sugar acids, where the terminal hydroxyl and carbonyl groups of the sugars have been replaced by terminal carboxylic acids, and are characterised by the formula HOOC-(CHOH)n-COOH.

<span class="mw-page-title-main">Threose</span> Chemical compound

Threose is a four-carbon monosaccharide with molecular formula C4H8O4. It has a terminal aldehyde group rather than a ketone in its linear chain, and so is considered part of the aldose family of monosaccharides. The threose name can be used to refer to both the D- and L-stereoisomers, and more generally to the racemic mixture (D/L-, equal parts D- and L-) as well as to the more generic threose structure (absolute stereochemistry unspecified).

A heptose is a monosaccharide with seven carbon atoms.

<span class="mw-page-title-main">Transketolase</span> Enzyme involved in metabolic pathways

Transketolase is an enzyme that, in humans, is encoded by the TKT gene. It participates in both the pentose phosphate pathway in all organisms and the Calvin cycle of photosynthesis. Transketolase catalyzes two important reactions, which operate in opposite directions in these two pathways. In the first reaction of the non-oxidative pentose phosphate pathway, the cofactor thiamine diphosphate accepts a 2-carbon fragment from a 5-carbon ketose (D-xylulose-5-P), then transfers this fragment to a 5-carbon aldose (D-ribose-5-P) to form a 7-carbon ketose (sedoheptulose-7-P). The abstraction of two carbons from D-xylulose-5-P yields the 3-carbon aldose glyceraldehyde-3-P. In the Calvin cycle, transketolase catalyzes the reverse reaction, the conversion of sedoheptulose-7-P and glyceraldehyde-3-P to pentoses, the aldose D-ribose-5-P and the ketose D-xylulose-5-P.

<span class="mw-page-title-main">Pyranose</span> Class of chemical compounds

Pyranose is a collective term for saccharides that have a chemical structure that includes a six-membered ring consisting of five carbon atoms and one oxygen atom. There may be other carbons external to the ring. The name derives from its similarity to the oxygen heterocycle pyran, but the pyranose ring does not have double bonds. A pyranose in which the anomeric OH at C(l) has been converted into an OR group is called a pyranoside.

The Kiliani–Fischer synthesis, named for German chemists Heinrich Kiliani and Emil Fischer, is a method for synthesizing monosaccharides. It proceeds via synthesis and hydrolysis of a cyanohydrin, followed by reduction of the intermediate acid to the aldehyde, thus elongating the carbon chain of an aldose by one carbon atom while preserving stereochemistry on all the previously present chiral carbons. The new chiral carbon is produced with both stereochemistries, so the product of a Kiliani–Fischer synthesis is a mixture of two diastereomeric sugars, called epimers. For example, D-arabinose is converted to a mixture of D-glucose and D-mannose.

<span class="mw-page-title-main">Aldonic acid</span> Family of sugar acids

An aldonic acid is any of a family of sugar acids obtained by oxidation of the aldehyde functional group of an aldose to form a carboxylic acid functional group. Thus, their general chemical formula is HOOC-(CHOH)n-CH2OH. Oxidation of the terminal hydroxyl group instead of the terminal aldehyde yields a uronic acid, while oxidation of both terminal ends yields an aldaric acid.

The suffix -ose is used in biochemistry to form the names of sugars. This Latin suffix means "full of", "abounding in", "given to", or "like". Numerous systems exist to name specific sugars more descriptively.

References

  1. Light, Robley (2001). "General Biochemistry I Summer 2001 Lecture Notes" (PDF). Archived (PDF) from the original on 29 June 2022.
  2. Monosaccharide Codes in KEGG
  3. Essentials of Glycobiology