ASCC3L1

SNRNP200
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2Q0Z, 4F91, 4F92, 4F93, 4KIT, 3JCR
Identifiers
Aliases	SNRNP200 , ASCC3L1, BRR2, HELIC2, RP33, U5-200KD, small nuclear ribonucleoprotein U5 subunit 200
External IDs	OMIM: 601664; MGI: 2444401; HomoloGene: 5859; GeneCards: SNRNP200; OMA:SNRNP200 - orthologs
Gene location (Human) Chr. Chromosome 2 (human) [1] Band 2q11.2 Start 96,274,338 bp [1] End 96,321,271 bp [1]
Gene location (Mouse) Chr. Chromosome 2 (mouse) [2] Band 2 F1|2 61.84 cM Start 127,050,306 bp [2] End 127,082,371 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ventricular zone embryo epithelium of nasopharynx ganglionic eminence nasal epithelium urethra parotid gland pylorus nipple tibia Top expressed in hand otic vesicle mandibular prominence maxillary prominence primitive streak condyle abdominal wall Paneth cell Gonadal ridge otolith organ More reference expression data BioGPS More reference expression data
Gene ontology Molecular function nucleotide binding helicase activity protein binding identical protein binding nucleic acid binding hydrolase activity ATP binding RNA binding Cellular component catalytic step 2 spliceosome membrane U5 snRNP nucleoplasm spliceosomal complex nucleus U4/U6 x U5 tri-snRNP complex post-mRNA release spliceosomal complex Biological process mRNA splicing, via spliceosome mRNA processing osteoblast differentiation cis assembly of pre-catalytic spliceosome RNA splicing spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 23020 320632 Ensembl ENSG00000144028 ENSMUSG00000003660 UniProt O75643 Q6P4T2 RefSeq (mRNA) NM_014014 NM_177214 RefSeq (protein) NP_054733 NP_796188 Location (UCSC) Chr 2: 96.27 – 96.32 Mb Chr 2: 127.05 – 127.08 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

U5 small nuclear ribonucleoprotein 200 kDa helicase is an enzyme that in humans is encoded by the SNRNP200 gene. ^{[5] [6] [7] [8] [9]}

References

1. GRCh38: Ensembl release 89: ENSG00000144028 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000003660 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Nagase T, Ishikawa K, Suyama M, Kikuno R, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Apr 1999). "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 5 (5): 277–86. doi: 10.1093/dnares/5.5.277 . PMID   9872452.
6. Lauber J, Fabrizio P, Teigelkamp S, Lane WS, Hartmann E, Luhrmann R (Oct 1996). "The HeLa 200 kDa U5 snRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases". EMBO J. 15 (15): 4001–15. doi:10.1002/j.1460-2075.1996.tb00774.x. PMC   452120 . PMID   8670905.
7. Achsel T, Ahrens K, Brahms H, Teigelkamp S, Luhrmann R (Nov 1998). "The Human U5-220kD Protein (hPrp8) Forms a Stable RNA-Free Complex with Several U5-Specific Proteins, Including an RNA Unwindase, a Homologue of Ribosomal Elongation Factor EF-2, and a Novel WD-40 Protein". Mol Cell Biol. 18 (11): 6756–66. doi:10.1128/mcb.18.11.6756. PMC   109259 . PMID   9774689.
8. Laggerbauer B, Achsel T, Luhrmann R (May 1998). "The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro". Proc Natl Acad Sci U S A. 95 (8): 4188–92. Bibcode:1998PNAS...95.4188L. doi: 10.1073/pnas.95.8.4188 . PMC   22463 . PMID   9539711.
9. "Entrez Gene: ASCC3L1 activating signal cointegrator 1 complex subunit 3-like 1".

External links

• Human SNRNP200 genome location and SNRNP200 gene details page in the UCSC Genome Browser .

Further reading

• Nakajima D, Okazaki N, Yamakawa H, et al. (2003). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Res. 9 (3): 99–106. doi: 10.1093/dnares/9.3.99 . PMID   12168954.
• Laggerbauer B, Lauber J, Lührmann R (1996). "Identification of an RNA-dependent ATPase activity in mammalian U5 snRNPs". Nucleic Acids Res. 24 (5): 868–75. doi:10.1093/nar/24.5.868. PMC   145735 . PMID   8600454.
• Meister G, Hannus S, Plöttner O, et al. (2001). "SMNrp is an essential pre-mRNA splicing factor required for the formation of the mature spliceosome". EMBO J. 20 (9): 2304–14. doi:10.1093/emboj/20.9.2304. PMC   125440 . PMID   11331595.
• Andersen JS, Lyon CE, Fox AH, et al. (2002). "Directed proteomic analysis of the human nucleolus". Curr. Biol. 12 (1): 1–11. Bibcode:2002CBio...12....1A. doi: 10.1016/S0960-9822(01)00650-9 . PMID   11790298. S2CID   14132033.
• Jurica MS, Licklider LJ, Gygi SR, et al. (2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". RNA. 8 (4) S1355838202021088: 426–39. doi:10.1017/S1355838202021088. PMC   1370266 . PMID   11991638.
• Peng R, Dye BT, Pérez I, et al. (2002). "PSF and p54nrb bind a conserved stem in U5 snRNA". RNA. 8 (10) S1355838202022070: 1334–47. doi:10.1017/S1355838202022070. PMC   1370341 . PMID   12403470.
• Nakayama M, Kikuno R, Ohara O (2003). "Protein–Protein Interactions Between Large Proteins: Two-Hybrid Screening Using a Functionally Classified Library Composed of Long cDNAs". Genome Res. 12 (11): 1773–84. doi:10.1101/gr.406902. PMC   187542 . PMID   12421765.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Will CL, Schneider C, Hossbach M, et al. (2004). "The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome". RNA. 10 (6): 929–41. doi:10.1261/rna.7320604. PMC   1370585 . PMID   15146077.
• Vertegaal AC, Ogg SC, Jaffray E, et al. (2004). "A proteomic study of SUMO-2 target proteins". J. Biol. Chem. 279 (32): 33791–8. doi: 10.1074/jbc.M404201200 . PMID   15175327.
• Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Jin J, Smith FD, Stark C, et al. (2004). "Proteomic, functional, and domain-based analysis of in vivo 14-3-3 binding proteins involved in cytoskeletal regulation and cellular organization". Curr. Biol. 14 (16): 1436–50. Bibcode:2004CBio...14.1436J. doi: 10.1016/j.cub.2004.07.051 . PMID   15324660. S2CID   2371325.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID   15635413. S2CID   4344740.