Ascorbate peroxidase

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L-ascorbate peroxidase
APX-ascorbate.png
Structure of ascorbate peroxidase in complex with ascorbate (in blue); a histidine ligand (in red) coordinates to the iron of the heme group (also in red). Image taken from PDB 1OAF and created using Pymol
Identifiers
EC no. 1.11.1.11
CAS no. 72906-87-7
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Ascorbate peroxidase (or L-ascorbate peroxidase, APX or APEX) (EC 1.11.1.11) is an enzyme that catalyzes the chemical reaction

Contents

L-ascorbate + H2O2 dehydroascorbate + 2 H2O

It is a member of the family of heme-containing peroxidases. Heme peroxidases catalyse the H2O2-dependent oxidation of a wide range of different, usually organic, substrates in biology.

This enzyme belongs to the family of oxidoreductases, specifically those acting on a peroxide as acceptor (peroxidases). The systematic name of this enzyme class is L-ascorbate:hydrogen-peroxide oxidoreductase. Other names in common use include L-ascorbic acid peroxidase, L-ascorbic acid-specific peroxidase, ascorbate peroxidase, and ascorbic acid peroxidase. This enzyme participates in ascorbate and aldarate metabolism.

Overview

Ascorbate-dependent peroxidase activity was first reported in 1979, [1] , [2] more than 150 years after the first observation of peroxidase activity in horseradish plants [3] and almost 40 years after the discovery of the closely related cytochrome c peroxidase enzyme. [4]

Peroxidases have been classified into three types (class I, class II and class III): ascorbate peroxidases is a class I peroxidase enzyme. [5] APXs catalyse the H2O2-dependent oxidation of ascorbate in plants, algae and certain cyanobacteria. [6] APX has high sequence identity to cytochrome c peroxidase, which is also a class I peroxidase enzyme. Under physiological conditions, the immediate product of the reaction, the monodehydroascorbate radical, is reduced back to ascorbate by a monodehydroascorbate reductase (monodehydroascorbate reductase (NADH)) enzyme. In the absence of a reductase, two monodehydroascorbate radicals disproportionate rapidly to dehydroascorbic acid and ascorbate. APX is an integral component of the glutathione-ascorbate cycle. [7]

Substrate specificity

APX enzymes show high specificity for ascorbate as an electron donor, but most APXs will also oxidise other organic substrates that are more characteristic of the class III peroxidases (such as horseradish peroxidase), in some cases at rates comparable to that of ascorbate itself. This means that defining an enzyme as an APX is not straightforward, but is usually applied when the specific activity for ascorbate is higher than that for other substrates. Some proteins from the APX family lack the ascorbate-binding amino acid residues suggesting that they might oxidize other molecules than ascorbate. [8]

Mechanism

Most of the information on mechanism comes from work on the pea cytosolic and soybean cytosolic enzymes. The mechanism of oxidation of ascorbate is achieved by means of an oxidized Compound I intermediate, which is subsequently reduced by substrate in two, sequential single electron transfer steps (equations [1]–[3], where HS = substrate and S = one electron oxidised form of substrate).

APX + H2O2 → Compound I + H2O [1]
Compound I + HS → Compound II + S [2]
Compound II + HS → APX + S + H2O [3]

In ascorbate peroxidase, Compound I is a transient (green) species and contains a high-valent iron species (known as ferryl heme, FeIV) and a porphyrin pi-cation radical, [9] , [10] as found in horseradish peroxidase. Compound II contains only the ferryl heme.

Structural information

The structure of pea cytosolic APX was reported in 1995. [11] The binding interaction of soybean cytosolic APX with its physiological substrate, ascorbate [12] , [13] and with a number of other substrates [14] are also known.

As of late 2007, 12 structures have been solved for this class of enzymes, with PDB accession codes 1APX, 1IYN, 1OAF, 1OAG, 1V0H, 2CL4, 2GGN, 2GHC, 2GHD, 2GHE, 2GHH, and 2GHK.

Applications in cellular imaging

Both pea APX [15] and soybean APX and their mutants (APEX, APEX2) [16] have been used in electron microscopy studies for cellular imaging.

See also

Related Research Articles

Antioxidants are compounds that inhibit oxidation, a chemical reaction that can produce free radicals. Autoxidation leads to degradation of organic compounds, including living matter. Antioxidants are frequently added to industrial products, such as polymers, fuels, and lubricants, to extend their usable lifetimes. Food are also treated with antioxidants to forestall spoilage, in particular the rancidification of oils and fats. In cells, antioxidants such as glutathione, mycothiol or bacillithiol, and enzyme systems like superoxide dismutase, can prevent damage from oxidative stress.

<span class="mw-page-title-main">Cytochrome c</span> Protein-coding gene in the species Homo sapiens

The cytochrome complex, or cyt c, is a small hemeprotein found loosely associated with the inner membrane of the mitochondrion where it plays a critical role in cellular respiration. It transfers electrons between Complexes III and IV. Cytochrome c is highly water-soluble, unlike other cytochromes. It is capable of undergoing oxidation and reduction as its iron atom converts between the ferrous and ferric forms, but does not bind oxygen. It also plays a major role in cell apoptosis. In humans, cytochrome c is encoded by the CYCS gene.

<span class="mw-page-title-main">Peroxidase</span> Peroxide-decomposing enzyme

Peroxidases or peroxide reductases are a large group of enzymes which play a role in various biological processes. They are named after the fact that they commonly break up peroxides.

<span class="mw-page-title-main">Heme</span> Chemical coordination complex of an iron ion chelated to a porphyrin

Heme, or haem, is a precursor to hemoglobin, which is necessary to bind oxygen in the bloodstream. Heme is biosynthesized in both the bone marrow and the liver.

<span class="mw-page-title-main">Cytochrome c peroxidase</span>

Cytochrome c peroxidase, or CCP, is a water-soluble heme-containing enzyme of the peroxidase family that takes reducing equivalents from cytochrome c and reduces hydrogen peroxide to water:

<span class="mw-page-title-main">Cytochrome P450</span> Class of enzymes

Cytochromes P450 are a superfamily of enzymes containing heme as a cofactor that mostly, but not exclusively, function as monooxygenases. In mammals, these proteins oxidize steroids, fatty acids, and xenobiotics, and are important for the clearance of various compounds, as well as for hormone synthesis and breakdown. In 1963, Estabrook, Cooper, and Rosenthal described the role of CYP as a catalyst in steroid hormone synthesis and drug metabolism. In plants, these proteins are important for the biosynthesis of defensive compounds, fatty acids, and hormones.

Cytochrome b<sub>5</sub>

Cytochromes b5 are ubiquitous electron transport hemoproteins found in animals, plants, fungi and purple phototrophic bacteria. The microsomal and mitochondrial variants are membrane-bound, while bacterial and those from erythrocytes and other animal tissues are water-soluble. The family of cytochrome b5-like proteins includes hemoprotein domains covalently associated with other redox domains in flavocytochrome cytochrome b2, sulfite oxidase, plant and fungal nitrate reductases, and plant and fungal cytochrome b5/acyl lipid desaturase fusion proteins.

<span class="mw-page-title-main">Horseradish peroxidase</span> Chemical compound and enzyme

The enzyme horseradish peroxidase (HRP), found in the roots of horseradish, is used extensively in biochemistry applications. It is a metalloenzyme with many isoforms, of which the most studied type is C. It catalyzes the oxidation of various organic substrates by hydrogen peroxide.

In enzymology, a L-galactonolactone oxidase (EC 1.3.3.12) is an enzyme that catalyzes the chemical reaction

Chloride peroxidase (EC 1.11.1.10) is a family of enzymes that catalyzes the chlorination of organic compounds. This enzyme combines the inorganic substrates chloride and hydrogen peroxide to produce the equivalent of Cl+, which replaces a proton in hydrocarbon substrate:

In enzymology, a manganese peroxidase (EC 1.11.1.13) is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">NADH peroxidase</span>

In enzymology, a NADH peroxidase (EC 1.11.1.1) is an enzyme that catalyzes the chemical reaction

In enzymology, a monodehydroascorbate reductase (MDAR) (EC 1.6.5.4) is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">Animal heme-dependent peroxidases</span>

Animal heme-dependent peroxidases is a family of peroxidases. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal heme peroxidases can be categorized as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin.

The ascorbate-glutathione cycle, sometimes Foyer-Halliwell-Asada pathway, is a metabolic pathway that detoxifies hydrogen peroxide (H2O2), a reactive oxygen species that is produced as a waste product in metabolism. The cycle involves the antioxidant metabolites: ascorbate, glutathione and NADPH and the enzymes linking these metabolites.

Haem peroxidases (or heme peroxidases) are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme:

Fatty-acid peroxygenase is an enzyme with systematic name fatty acid:hydroperoxide oxidoreductase (RH-hydroxylating). This enzyme catalyses the following chemical reaction

<span class="mw-page-title-main">Eosinophil peroxidase</span> Protein-coding gene in the species Homo sapiens

Eosinophil peroxidase is an enzyme found within the eosinophil granulocytes, innate immune cells of humans and mammals. This oxidoreductase protein is encoded by the gene EPX, expressed within these myeloid cells. EPO shares many similarities with its orthologous peroxidases, myeloperoxidase (MPO), lactoperoxidase (LPO), and thyroid peroxidase (TPO). The protein is concentrated in secretory granules within eosinophils. Eosinophil peroxidase is a heme peroxidase, its activities including the oxidation of halide ions to bacteriocidal reactive oxygen species, the cationic disruption of bacterial cell walls, and the post-translational modification of protein amino acid residues.

<span class="mw-page-title-main">Cytochrome P450 aromatic O-demethylase</span>

Cytochrome P450 aromatic O-demethylase is a bacterial enzyme that catalyzes the demethylation of lignin and various lignols. The net reaction follows the following stoichiometry, illustrated with a generic methoxy arene:

Emma Raven is a British chemist and chemical biologist. She is a Professor of Chemistry and Head of the School of Chemistry at the University of Bristol. She was previously a Professor at the University of Leicester. Her research work is concerned with the role of heme in biology, in particular on the mechanism of action, structures and biological function of heme proteins.

References

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  2. Groden D, Beck E (June 1979). "H2O2 destruction by ascorbate-dependent systems from chloroplasts". Biochimica et Biophysica Acta (BBA) - Bioenergetics. 546 (3): 426–35. doi:10.1016/0005-2728(79)90078-1. PMID   454577.
  3. Planche LA (1810). "Note sur la sophistication de la résine de jalap et sur les moyens de la reconnaître". Bull Pharm. 2: 578–80.
  4. Altschul AM, Abrams R, Hogness TR (1940). "Cytochrome c Peroxidase" (PDF). Journal of Biological Chemistry. 136 (3): 777–794. doi: 10.1016/S0021-9258(18)73036-6 .
  5. Welinder KG (1992). "Superfamily of plant, fungal and bacterial peroxidases". Curr. Opin. Chem. Biol. 2 (3): 388–393. doi:10.1016/0959-440x(92)90230-5.
  6. Raven EL (August 2003). "Understanding functional diversity and substrate specificity in haem peroxidases: what can we learn from ascorbate peroxidase?". Natural Product Reports. 20 (4): 367–81. doi:10.1039/B210426C. PMID   12964833.
  7. Noctor G, Foyer CH (June 1998). "ASCORBATE AND GLUTATHIONE: Keeping Active Oxygen Under Control". Annual Review of Plant Physiology and Plant Molecular Biology. 49: 249–279. doi:10.1146/annurev.arplant.49.1.249. PMID   15012235.
  8. Lazzarotto F, Menguer PK, Del-Bem LE, Zámocký M, Margis-Pinheiro M (April 2021). "Ascorbate Peroxidase Neofunctionalization at the Origin of APX-R and APX-L: Evidence from Basal Archaeplastida". Antioxidants. 10 (4): 597. doi: 10.3390/antiox10040597 . PMC   8069737 . PMID   33924520.
  9. Patterson WR, Poulos TL, Goodin DB (April 1995). "Identification of a porphyrin pi cation radical in ascorbate peroxidase compound I". Biochemistry. 34 (13): 4342–5. doi:10.1021/bi00013a024. PMID   7703248.
  10. Jones DK, Dalton DA, Rosell FI, Raven EL (December 1998). "Class I heme peroxidases: characterization of soybean ascorbate peroxidase". Archives of Biochemistry and Biophysics. 360 (2): 173–8. doi:10.1006/abbi.1998.0941. PMID   9851828.
  11. Patterson WR, Poulos TL (April 1995). "Crystal structure of recombinant pea cytosolic ascorbate peroxidase". Biochemistry. 34 (13): 4331–41. doi:10.1021/bi00013a023. PMID   7703247.
  12. Sharp KH, Mewies M, Moody PC, Raven EL (April 2003). "Crystal structure of the ascorbate peroxidase-ascorbate complex". Nature Structural Biology. 10 (4): 303–7. doi:10.1038/nsb913. PMID   12640445. S2CID   32035409.
  13. Macdonald IK, Badyal SK, Ghamsari L, Moody PC, Raven EL (June 2006). "Interaction of ascorbate peroxidase with substrates: a mechanistic and structural analysis". Biochemistry. 45 (25): 7808–17. doi:10.1021/bi0606849. PMID   16784232.
  14. Gumiero A, Murphy EJ, Metcalfe CL, Moody PC, Raven EL (August 2010). "An analysis of substrate binding interactions in the heme peroxidase enzymes: a structural perspective". Archives of Biochemistry and Biophysics. 500 (1): 13–20. doi:10.1016/j.abb.2010.02.015. PMID   20206594.
  15. Martell JD, Deerinck TJ, Sancak Y, Poulos TL, Mootha VK, Sosinsky GE, et al. (November 2012). "Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy". Nature Biotechnology. 30 (11): 1143–8. doi:10.1038/nbt.2375. PMC   3699407 . PMID   23086203.
  16. Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY (January 2015). "Directed evolution of APEX2 for electron microscopy and proximity labeling". Nature Methods. 12 (1): 51–4. doi:10.1038/nmeth.3179. PMC   4296904 . PMID   25419960.

Further reading