Genetically encoded voltage indicator

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Genetically encoded voltage indicator (or GEVI) is a protein that can sense membrane potential in a cell and relate the change in voltage to a form of output, often fluorescent level. [1] It is a promising optogenetic recording tool that enables recording of electrophysiological signals from cultured cells and live animals. Examples of GEVI families include Quasar/Archon, [2] [3] Ace-mNeon, [4] and ASAP. [5] [6]

Contents

History

Even though the idea of optical measurement of neuronal activity was proposed in the late 1960s, [7] the first successful GEVI that was convenient enough to put into actual use was not developed until technologies of genetic engineering had become mature in the late 1990s. The first GEVI, coined FlaSh, [8] was constructed by fusing a modified green fluorescent protein with a voltage-sensitive K+ channel (Shaker). Unlike fluorescent proteins, the discovery of new GEVIs are seldom inspired by nature, for it is hard to find an organism which naturally has the ability to change its fluorescence based on voltage. Therefore, new GEVIs are mostly the products of genetic and protein engineering.

Two methods can be utilized to find novel GEVIs: rational design and directed evolution. The former method contributes to the most of new GEVI variants, but recent research using directed evolution have shown promising results in GEVI optimization. [9] [10]

Structure

Conceptually, a GEVI should sense the voltage difference across the cell membrane and report it by a change in fluorescence. Many different structures can be used for the voltage sensing function, [11] but one essential feature is that it must be imbedded in the cell membrane. Usually, the voltage-sensing domain (VSD) of a GEVI spans across the membrane, and is connected to the fluorescent protein (FP). However, it is not necessary that sensing and reporting must happen in different structures - see, for example, the Archons.

By structure, GEVIs can be classified into four categories based on the current findings: (1) GEVIs contain a fluorescent protein FRET pair, e.g. VSFP1, (2) Single opsin GEVIs, e.g. Arch, (3) Opsin-FP FRET pair GEVIs, e.g. MacQ-mCitrine, (4) single FP with special types of voltage sensing domains, e.g. ASAP1. A majority of GEVIs are based on the Ciona intestinalis voltage sensitive phosphatase (Ci-VSP or Ci-VSD (domain)), which was discovered in 2005 from the genomic survey of the organism. [12] Some GEVIs may have similar components, but in different positions. For example, ASAP1 and ArcLight both use a VSD and one FP, but the FP of ASAP1 is on the outside of the cell whereas that of ArcLight is on the inside, and the two FPs of VSFP-Butterfly are separated by the VSD, while the two FPs of Mermaid are relatively close to each other.

Table of GEVIs and their structure
GEVI [A] YearSensingReportingPrecursor
FlaSh [8] 1997Shaker (K+ channel)GFP-
VSFP1 [13] 2001Rat Kv2.1 (K+ channel) FRET pair: CFP and YFP-
SPARC [14] 2002Rat Na+ channelGFP-
VSFP2's [15] 2007Ci-VSD FRET pair: CFP (Cerulean) and YFP (Citrine)VSFP1
Flare [16] 2007Kv1.4 (K+ channel)YFPFlaSh
VSFP3.1 [17] 2008Ci-VSDCFPVSFP2's
Mermaid [18] 2008Ci-VSD FRET pair: Marine GFP (mUKG) and OFP (mKOκ)VSFP2's
hVOS [19] 2008 Dipicrylamine GFP-
Red-shifted VSFP's [20] 2009Ci-VSDRFP/YFP (Citrine, mOrange2, TagRFP, or mKate2)VSFP3.1
PROPS [21] 2011Modified green-absorbing proteorhodopsin (GPR)Same as left-
Zahra, Zahra 2 [22] 2012Nv-VSD, Dr-VSD FRET pair: CFP (Cerulean) and YFP (Citrine)VSFP2's
ArcLight [23] 2012Ci-VSDModified super ecliptic pHluorin-
Arch [24] 2012 Archaerhodopsin 3 Same as left-
ElectricPk [25] 2012Ci-VSDCircularly permuted EGFPVSFP3.1
VSFP-Butterfly [26] 2012Ci-VSD FRET pair: YFP (mCitrine) and RFP (mKate2)VSFP2's
VSFP-CR [27] 2013Ci-VSD FRET pair: GFP (Clover) and RFP(mRuby2)VSFP2.3
Mermaid2 [28] 2013Ci-VSD FRET pair: CFP (seCFP2) and YFPMermaid
Mac GEVIs [29] 2014Mac rhodopsin (FRET acceptor)FRET doner: mCitrine, or mOrange2-
QuasAr1, QuasAr2 [30] 2014Modified Archaerhodopsin 3Same as leftArch
Archer [31] 2014Modified Archaerhodopsin 3Same as leftArch
ASAP1 [32] 2014Modified Gg-VSDCircularly permuted GFP-
Ace GEVIs [33] 2015Modified Ace rhodopsinFRET doner: mNeonGreenMac GEVIs
ArcLightning [34] 2015Ci-VSDModified super ecliptic pHluorinArcLight
Pado [35] 2016Voltage-gated proton channelSuper ecliptic pHluorin-
ASAP2f [36] 2016Modified Gg-VSDCircularly permuted GFPASAP1
FlicR1 [37] 2016Ci-VSDCircularly permuted RFP (mApple)VSFP3.1
Bongwoori [38] 2017Ci-VSDModified super ecliptic pHluorin ArcLight
ASAP2s [39] 2017Modified Gg-VSDCircularly permuted GFPASAP1
ASAP-Y [40] 2017Modified Gg-VSDCircularly permuted GFPASAP1
(pa)QuasAr3(-s) [41] 2019Modified Archaerhodopsin 3Same as leftQuasAr2
Voltron(-ST) [42] 2019Modified Ace rhodopsin (Ace2)FRET doner: Janelia Fluor (chemical)-
ASAP3 [43] 2019Modified Gg-VSDCircularly permuted GFPASAP2s
JEDI-2P [44] 2022Modified Gg-VSDCircularly permuted GFPASAP2s
ASAP42023Modified Gg-VSDCircularly permuted GFPASAP2s
ASAP52024Modified Gg-VSDCircularly permuted GFPASAP3
  1. ↑Names in italic denote GEVIs not named.

Characteristics

A GEVI can be evaluated by its many characteristics. These traits can be classified into two categories: performance and compatibility. The performance properties include brightness, photostability, sensitivity, kinetics (speed), linearity of response, etc., while the compatibility properties cover toxicity (phototoxicity), plasma membrane localization, adaptability of deep-tissue imaging, etc. [45]

Applications, advantages, and disadvantages

Different types of GEVIs are being developed in many biological or physiological research areas. Unlike earlier voltage detecting methods like electrode-based electrophysiological recordings or voltage sensitive dyes, GEVIs can be expressed stably, and can be targeted to particular cell types. GEVIs have subcellular spatial resolution [46] and temporal resolution as low as 0.2 milliseconds, at least an order of magnitude faster than calcium imaging. This allows for spike detection fidelity comparable to electrode-based electrophysiology but without the invasiveness. [33] Researchers have used them to probe neural communications of an intact brain (of Drosophila [47] or mouse [48] ), electrical spiking of bacteria ( E. coli [21] ), and human stem-cell derived cardiomyocyte. [49] [50]

Conversely, any form of voltage indication has inherent limitations. [51] Imaging must be fast, or short voltage excursions will be missed. This means fewer photons per image exposure. Next, brightness per cell is inherently lower than calcium indicators, as about a 30-fold fewer voltage indicators can fit in the membrane compared to cytosolic calcium indicators.

References

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  2. ↑ Tian, H.; Davis, H. C.; Wong-Campos, J. D.; Park, P.; Fan, L. Z.; Gmeiner, B.; Begum, S.; Werley, C. A.; Borja, G. B.; Upadhyay, H.; Shah, H.; Jacques, J.; Qi, Y.; Parot, V.; Deisseroth, K.; Cohen, A. E. (2023). "Video-based pooled screening yields improved far-red genetically encoded voltage indicators". Nature Methods. 20 (7): 1082–1094. doi:10.1038/s41592-022-01743-5. PMC   10329731 . PMID   36624211.
  3. ↑ Piatkevich, K. D.; Jung, E. E.; Straub, C.; Linghu, C.; Park, D.; Suk, H. J.; Hochbaum, D. R.; Goodwin, D.; Pnevmatikakis, E.; Pak, N.; Kawashima, T.; Yang, C. T.; Rhoades, J. L.; Shemesh, O.; Asano, S.; Yoon, Y. G.; Freifeld, L.; Saulnier, J. L.; Riegler, C.; Engert, F.; Hughes, T.; Drobizhev, M.; Szabo, B.; Ahrens, M. B.; Flavell, S. W.; Sabatini, B. L.; Boyden, E. S. (2018). "A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters". Nature Chemical Biology. 14 (4): 352–360. doi:10.1038/s41589-018-0004-9. PMC   5866759 . PMID   29483642.
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