Glycoside hydrolase family 65

Last updated
Glycosyl hydrolase family 65, N-terminal domain
PDB 1h54 EBI.jpg
maltose phosphorylase from lactobacillus brevis
Identifiers
SymbolGlyco_hydro_65N
Pfam PF03636
Pfam clan CL0103
InterPro IPR005196
SCOP2 1h54 / SCOPe / SUPFAM
CAZy GH65
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Glycosyl hydrolase family 65 central catalytic domain
PDB 1h54 EBI.jpg
maltose phosphorylase from lactobacillus brevis
Identifiers
SymbolGlyco_hydro_65m
Pfam PF03632
Pfam clan CL0059
InterPro IPR005195
SCOP2 1h54 / SCOPe / SUPFAM
CAZy GH65
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Glycosyl hydrolase family 65, C-terminal domain
PDB 1h54 EBI.jpg
maltose phosphorylase from lactobacillus brevis
Identifiers
SymbolGlyco_hydro_65C
Pfam PF03633
InterPro IPR005194
SCOP2 1h54 / SCOPe / SUPFAM
CAZy GH65
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

In molecular biology, glycoside hydrolase family 65 is a family of glycoside hydrolases.

Glycoside hydrolases EC 3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycoside hydrolases, based on sequence similarity, has led to the definition of >100 different families. [1] [2] [3] This classification is available on the CAZy web site, [4] [5] and also discussed at CAZypedia, an online encyclopedia of carbohydrate active enzymes. [6] [7]

This family of glycosyl hydrolases (CAZY GH_65) includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose.

It consists of three structural domains. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown. [8] The central domain is the catalytic domain, which binds a phosphate ion that is proximal the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucleophilic attack on the anomeric carbon atom. [8] The catalytic domain also forms the majority of the dimerisation interface. The N-terminal domain is believed to be essential for catalytic activity [8] although its precise function remains unknown.

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References

  1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G (July 1995). "Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases". Proceedings of the National Academy of Sciences of the United States of America. 92 (15): 7090–4. Bibcode:1995PNAS...92.7090H. doi: 10.1073/pnas.92.15.7090 . PMC   41477 . PMID   7624375.
  2. Davies G, Henrissat B (September 1995). "Structures and mechanisms of glycosyl hydrolases". Structure. 3 (9): 853–9. doi: 10.1016/S0969-2126(01)00220-9 . PMID   8535779.
  3. Henrissat B, Bairoch A (June 1996). "Updating the sequence-based classification of glycosyl hydrolases". The Biochemical Journal. 316 (Pt 2): 695–6. doi:10.1042/bj3160695. PMC   1217404 . PMID   8687420.
  4. "Home". CAZy.org. Retrieved 2018-03-06.
  5. Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B (January 2014). "The carbohydrate-active enzymes database (CAZy) in 2013". Nucleic Acids Research. 42 (Database issue): D490–5. doi:10.1093/nar/gkt1178. PMC   3965031 . PMID   24270786.
  6. "Glycoside Hydrolase Family 65". CAZypedia.org. Retrieved 2018-03-06.
  7. CAZypedia Consortium (December 2018). "Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes" (PDF). Glycobiology. 28 (1): 3–8. doi: 10.1093/glycob/cwx089 . PMID   29040563.
  8. 1 2 3 van Tilbeurgh H, Egloff MP, Uppenberg J, Haalck L (2001). "Crystal structure of maltose phosphorylase from Lactobacillus brevis: unexpected evolutionary relationship with glucoamylases". Structure. 9 (8): 689–697. doi: 10.1016/S0969-2126(01)00626-8 . PMID   11587643.
This article incorporates text from the public domain Pfam and InterPro: IPR005194
This article incorporates text from the public domain Pfam and InterPro: IPR005195
This article incorporates text from the public domain Pfam and InterPro: IPR005196