| Train Name | Railroad | Train Endpoints | Operated |
|---|
| Argo Bromo Anggrek | Kereta Api Indonesia | Jakarta (Gambir) – Surabaya (Surabaya Pasar Turi) | Since 1995 (First operated as Argo Bromo) Since 1997 (Operated as Argo Bromo Anggrek) |
| Argo Dwipangga | Kereta Api Indonesia | Jakarta (Gambir) – Yogyakarta (Yogyakarta) – Surakarta (Solo Balapan) | Since 1998 |
| Argo Cheribon | Kereta Api Indonesia | Jakarta (Gambir) – Cirebon (Cirebon) | Since 2010 (Replacing Argo Jati) |
| Argo Lawu | Kereta Api Indonesia | Jakarta (Gambir) – Yogyakarta (Yogyakarta) – Surakarta (Solo Balapan) | Since 1996 |
| Argo Muria | Kereta Api Indonesia | Jakarta (Gambir) – Semarang (Semarang Tawang) | Since 1997 |
| Argo Parahyangan | Kereta Api Indonesia | Jakarta (Gambir) – Bandung (Bandung) | Since 2010 (Replacing Argo Gede and Parahyangan) |
| Argo Sindoro | Kereta Api Indonesia | Jakarta (Gambir) – Semarang (Semarang Tawang) | Since 2001 (Replacing Argo Muria I) |
| Argo Wilis | Kereta Api Indonesia | Bandung (Bandung) – Surabaya (Surabaya Gubeng) | Since 1998 |
| Bangunkarta | Kereta Api Indonesia | Jakarta (Pasar Senen) – Jombang (Jombang) – Surabaya (Surabaya Gubeng) | Since 1985 (First operated) Since 2013 (Route extended to Surabaya Gubeng) |
| Banten Express/Patas Merak | Kereta Api Indonesia | Jakarta (Angke) – Merak (Merak) | |
| Bengawan | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surakarta (Purwosari) | |
| Bima | Kereta Api Indonesia | Jakarta (Gambir) – Surabaya (Surabaya Gubeng) – Malang (Malang) | Since 1967 (First operated) Since 2014 (Route extended to Malang) |
| Bogowonto | Kereta Api Indonesia | Jakarta (Pasar Senen) – Yogyakarta (Lempuyangan) | Since 2010 |
| Brantas | Kereta Api Indonesia | Jakarta (Pasar Senen) – Kediri (Kediri) | Since 1980 |
| Cirebon Express | Kereta Api Indonesia | Jakarta (Gambir) – Cirebon (Cirebon) | Since 1989 |
| Ciremai Ekspres | Kereta Api Indonesia | Bandung (Bandung) – Cirebon (Cirebon) | Since 2013 |
| Fajar Utama Yogyakarta | Kereta Api Indonesia | Jakarta (Pasar Senen) – Yogyakarta (Yogyakarta) | Since 1986 |
| Gajayana | Kereta Api Indonesia | Jakarta (Gambir) – Malang (Malang) | Since 1999 |
| Gajah Wong | Kereta Api Indonesia | Jakarta (Pasar Senen) – Yogyakarta (Lempuyangan) | Since 2011 |
| Gaya Baru Malam Selatan | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surabaya (Surabaya Gubeng) | |
| Gumarang | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surabaya (Surabaya Pasar Turi) | Since 2001 |
| Harina | Kereta Api Indonesia | Bandung (Bandung) – Semarang (Semarang Tawang) – Surabaya (Surabaya Pasar Turi) | Since 2003 (First operated) Since 2013 (Route extended to Surabaya) |
| Jaka Tingkir | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surakarta (Purwosari) | Since 2013 |
| Jayabaya | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surabaya (Surabaya Pasar Turi) – Malang (Malang) | Since 2014 (Revival from business class Jayabaya Utara) |
| Joglokerto Ekspres | Kereta Api Indonesia | Surakarta (Solo Balapan) – Yogyakarta (Yogyakarta) – Purwokerto (Purwokerto) | Since 2014 (First operated as Joglo Ekspres) Since 2015 (Route extended to Purwokerto and name changed to Joglokerto Ekspres) |
| Kahuripan | Kereta Api Indonesia | Bandung (Kiaracondong) – Kediri (Kediri) | Since 1995 |
| Kaligung | Kereta Api Indonesia | Tegal (Tegal) – Semarang (Semarang Poncol) | Since 2010 |
| Kalijaga | Kereta Api Indonesia | Surakarta (Solo Balapan) – Semarang (Semarang Poncol) | Since 2014 |
| Kalimaya | Kereta Api Indonesia | Jakarta (Tanah Abang) – Merak (Merak) | Since 2012 |
| Kamandaka | Kereta Api Indonesia | Purwokerto (Purwokerto) – Semarang (Semarang Tawang) | Since 2014 |
| Krakatau Ekspres | Kereta Api Indonesia | Merak (Merak) – Jakarta (Pasar Senen) – Kediri (Kediri) | Since 2013 |
| Kertajaya | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surabaya (Surabaya Pasar Turi) | |
| Kutojaya Selatan | Kereta Api Indonesia | Bandung (Kiaracondong) – Purworejo (Kutoarjo) | Since 1997 |
| Kutojaya Utara | Kereta Api Indonesia | Jakarta (Pasar Senen) – Purworejo (Kutoarjo) | Since 1977 |
| Lodaya | Kereta Api Indonesia | Bandung (Bandung) – Yogyakarta (Yogyakarta) – Surakarta (Solo Balapan) | Since 1992 |
| Logawa | Kereta Api Indonesia | Purwokerto (Purwokerto) – Jember (Jember) | |
| Madiun Jaya/Mantab | Kereta Api Indonesia | Jakarta (Pasar Senen) – Madiun (Madiun) | Operating only on public holiday |
| Maharani | Kereta Api Indonesia | Semarang (Semarang Poncol) – Surabaya (Surabaya Pasar Turi) | Since 2014 |
| Majapahit | Kereta Api Indonesia | Jakarta (Pasar Senen) – Malang (Malang) | Since 2009 (First operated as Senja Kediri) Since 2012 (Name changed to Majapahit) |
| Malabar | Kereta Api Indonesia | Bandung (Bandung) – Malang (Malang) | Since 2010 |
| Malioboro Ekspres | Kereta Api Indonesia | Yogyakarta (Yogyakarta) – Malang (Malang) | Since 2012 |
| Matarmaja | Kereta Api Indonesia | Jakarta (Pasar Senen) – Malang (Malang) | |
| Menoreh | Kereta Api Indonesia | Jakarta (Jakarta Kota) – Semarang (Semarang Tawang) | Since 2012 (First operation) Since 2019(Station changed from Pasar Senen to Jakarta Kota) |
| Mutiara Selatan | Kereta Api Indonesia | Bandung (Bandung) – Surabaya (Surabaya Gubeng) | |
| Mutiara Timur | Kereta Api Indonesia | Surabaya (Surabaya Gubeng) – Banyuwangi (Ketapang) | |
| Pangrango | Kereta Api Indonesia | Bogor (Bogor Paledang) – Sukabumi (Sukabumi) | |
| Pasundan | Kereta Api Indonesia | Bandung (Kiaracondong) – Surabaya (Surabaya Gubeng) | |
| Jatiluhur Ekspress | Kereta Api Indonesia | Jakarta (Tanjung Priuk) – Cikampek (Cikampek) | Since 1966 |
| Walahar Ekspres | Kereta Api Indonesia | Jakarta (Tanjung Priuk) – Purwakarta (Purwakarta) | Since 1971 |
| Penataran | Kereta Api Indonesia | Surabaya (Surabaya Kota) – Malang (Malang) – Blitar (Blitar) | |
| Probowangi | Kereta Api Indonesia | Surabaya (Surabaya Kota) – Banyuwangi (Ketapang) | |
| Progo | Kereta Api Indonesia | Jakarta (Pasar Senen) – Yogyakarta (Lempuyangan) | |
| Purwojaya | Kereta Api Indonesia | Jakarta (Gambir) – Cilacap (Cilacap) | |
| Rangkas Jaya | Kereta Api Indonesia | Jakarta (Pasar Senen) – Rangkasbitung (Rangkasbitung) | |
| Sancaka | Kereta Api Indonesia | Yogyakarta (Yogyakarta) – Surabaya (Surabaya Gubeng) | |
| Sawunggalih Utama | Kereta Api Indonesia | Jakarta (Pasar Senen) – Purworejo (Kutoarjo) | |
| Sembrani | Kereta Api Indonesia | Jakarta (Gambir) – Surabaya (Surabaya Pasar Turi) | |
| Senja Utama Solo | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surakarta (Solo Balapan) | |
| Senja Utama Yogyakarta | Kereta Api Indonesia | Jakarta (Pasar Senen) – Yogyakarta (Yogyakarta) | |
| Serayu | Kereta Api Indonesia | Jakarta (Pasar Senen) – Bandung (Kiaracondong) – Purwokerto (Purwokerto) | |
| Senja Utama Solo | Kereta Api Indonesia | Jakarta (Pasar Senen) – Surakarta (Solo Balapan) | |
| Siantar Ekspres | Kereta Api Indonesia | Medan (Medan) – Pematangsiantar (Siantar) | |
| Siliwangi | Kereta Api Indonesia | Sukabumi (Sukabumi) – Cianjur (Cianjur) | |
| Simandra/Lokal Cibatu | Kereta Api Indonesia | Garut (Cibatu) – Purwakarta (Purwakarta) | |
| Sri Tanjung | Kereta Api Indonesia | Yogyakarta (Lempuyangan) – Banyuwangi (Ketapang) | |
| Taksaka | Kereta Api Indonesia | Jakarta (Gambir) – Yogyakarta (Yogyakarta) | |
| Tawang Alun | Kereta Api Indonesia | Malang (Malang) – Banyuwangi (Ketapang) | |
| Tawang Jaya | Kereta Api Indonesia | Jakarta (Pasar Senen) – Semarang (Semarang Poncol) | |
| Tegal Arum | Kereta Api Indonesia | Jakarta (Pasar Senen) – Tegal (Tegal) | |
| Tegal Bahari | Kereta Api Indonesia | Jakarta (Gambir) – Tegal (Tegal) | |
| Tegal Ekspres | Kereta Api Indonesia | Jakarta (Pasar Senen) – Tegal (Tegal) | |
| Turangga | Kereta Api Indonesia | Bandung (Bandung) – Surabaya (Surabaya Kota) | |
| Serelo | Kereta Api Indonesia | Palembang (Kertapati) – Lubuklinggau (Lubuklinggau) | |
| Sindang Marga | Kereta Api Indonesia | Palembang (Kertapati) – Lubuklinggau (Lubuklinggau) | |
| Sriwijaya | Kereta Api Indonesia | Palembang (Kertapati) – Bandar Lampung (Tanjung Karang) | |
| Rajabasa | Kereta Api Indonesia | Palembang (Kertapati) – Bandar Lampung (Tanjung Karang) | |
| Putri Deli | Kereta Api Indonesia | Medan (Medan) – Tanjungbalai (Tanjungbalai) | |
| Siantar Express | Kereta Api Indonesia | Medan (Medan) – Pematangsiantar (Siantar) | |
| Sribilah | Kereta Api Indonesia | Medan (Medan) – Labuhan Batu (Rantau Prapat) | |
| Sibinuang | Kereta Api Indonesia | Padang (Padang) – Pariaman (Naras) | |
