| Company | Acquired from | Date [12] | Notes | 
|---|
| Alabama and Gulf Coast Railway | StatesRail [13] | January 2002 | 
| Arizona and California Railroad | ParkSierra [14] | January 2002 | 
| Bauxite and Northern Railway | Alcoa [15] | September 2005 | 
| California Northern Railroad | ParkSierra [14] | January 2002 | 
| Cape Breton and Central Nova Scotia Railway | RailTex [16] | February 2000 | 
| Carolina Piedmont Railroad | RailTex [17] | February 2000 | 
| Cascade and Columbia River Railroad | direct [18] | September 1996 | 
| Central Michigan Railway | direct | January 2004 | Leased by Huron and Eastern Railway | 
| Central Oregon and Pacific Railroad | RailTex [17] | February 2000 | 
| Central Railroad of Indiana | RailTex [17] | February 2000 | 
| Central Railroad of Indianapolis | RailTex [17] | February 2000 | Also operates Winamac Southern Railway as agent | 
| Chesapeake and Albemarle Railroad | RailTex [17] | February 2000 | 
| Chicago, Fort Wayne and Eastern Railroad | direct [19] | July 2004 | 
| Connecticut Southern Railroad | RailTex [17] | February 2000 | 
| Dallas, Garland and Northeastern Railroad | RailTex [17] | February 2000 | 
| Eastern Alabama Railway | StatesRail [20] | January 2002 | 
| Goderich-Exeter Railway | RailTex [16] | February 2000 | 
| Grand Rapids Eastern Railroad | RailTex [17] | February 2000 | 
| Huron and Eastern Railway | direct | March 1992 | 
| Indiana and Ohio Railway | RailTex [17] | February 2000 | 
| Indiana Southern Railroad | RailTex [17] | February 2000 | 
| Kiamichi Railroad | direct [21] | January 2002 | 
| Kyle Railroad | StatesRail [20] | January 2002 | 
| Lahaina, Kaanapali and Pacific Railroad | StatesRail [12] | January 2002 | 
| Marquette Rail | direct [22] | February 2012 | 
| Massena Terminal Railroad | Alcoa [15] | September 2005 | 
| Michigan Shore Railroad | RailTex [17] | February 2000 | 
| Mid-Michigan Railroad | RailTex [17] | February 2000 | 
| Missouri and Northern Arkansas Railroad | RailTex [17] | February 2000 | 
| New England Central Railroad | RailTex [17] | February 2000 | 
| North Carolina and Virginia Railroad | RailTex [17] | February 2000 | 
| Ottawa Valley Railway | RaiLink [12] | July 1999 | 
| Otter Tail Valley Railroad | direct [23] | October 1996 | 
| Point Comfort and Northern Railway | Alcoa [15] | September 2005 | 
| Puget Sound and Pacific Railroad | ParkSierra [14] | January 2002 | 
| Raillink Canada Limited | Direct | January 2002 | Registered office in Montreal | 
| Rockdale, Sandow and Southern Railroad | Alcoa [15] | September 2005 | 
| San Diego and Imperial Valley Railroad | RailTex [17] | February 2000 | 
| San Joaquin Valley Railroad | StatesRail [20] | January 2002 | 
| South Carolina Central Railroad | RailTex [17] | February 2000 | 
| Southern Ontario Railway | RaiLink [12] | July 1999 | 
| Texas Northeastern Railroad | RailTex [17] | February 2000 | 
| Toledo, Peoria and Western Railway | direct [24] | September 1999 | 
| Ventura County Railroad | direct [25] | August 1998 | 
| Virginia Southern Railroad | RailTex [17] | February 2000 | 
| A&R Line, Inc. | TP&W | September 1999 | Leased by TP&W since 1997; owned by Cargill; service ended in September 2002 [26] | 
| Arizona Eastern Railway | StatesRail [20] | January 2002 | Sold December 2004 to Permian Basin Railways  [12]  [27]  [28] | 
| Central Western Railway | RaiLink [12] | July 1999 | Sold January 2006 [12] | 
| Dakota Rail, Inc. | direct | September 1995 | Sold December 2001 to Hennepin County Regional Railroad Authority  [12]  [29] | 
| Delaware Valley Railway | direct | July 1994 | Lease transferred March 1999 to Brandywine Valley Railroad  [30] | 
| E&N Railway | direct | January 1999 | Sold June 2006 to Southern Railway of British Columbia | 
| Evansville Terminal Company | direct [31] | June 1996 | Sold September 1997 to John H. Marino [12]  [32] | 
| Ferronor | direct | February 1997 | Leased Potrerillos Railway in January 2002; [33]  sold February 2004 [12] | 
| Freight Australia | direct | April 1999 | Sold August 2004 to Pacific National  [12] | 
| Georgia Southwestern Railroad | RailTex [17] | February 2000 | Sold March 2002 to local interests [12]  [34] | 
| Gettysburg Railway | direct [35] | November 1996 | Sold October 1997 to John H. Marino; included Gettysburg Scenic Rail Tours  [12]  [32] | 
| Indiana and Ohio Central Railroad | RailTex [17] | February 2000 | Merged May 2005 into Indiana and Ohio Railway  [36] | 
| J.K. Line, Inc. | TP&W | September 1999 | Leased by TP&W since 1998; owned by Cargill; service ended in April 2002 [37]  [38] | 
| Lakeland and Waterways Railway | RaiLink [12] | July 1999 | Sold January 2006 [12] | 
| Mackenzie Northern Railway | RaiLink [12] | July 1999 | Sold January 2006 [12] | 
| Minnesota Northern Railroad | direct [39] | December 1996 | Sold August 2000 to KBN, Inc.  [12]  [40] | 
| Ontario L'Orignal Railway | RailTex [16] | February 2000 | Sold December 2000 [12] | 
| Pittsburgh Industrial Railroad | RailTex [17] | February 2000 | Sold December 2000 to Summit View, Inc.  [12]  [41] | 
| Plainview Terminal Company | direct | November 1995 |  | 
| St. Croix Valley Railroad | direct [42] | September 1997 | Sold August 2000 to KBN, Inc.  [12]  [40] | 
| Saginaw Valley Railway | direct | March 1992 | Merged September 2004 into Huron and Eastern Railway  [43] | 
| San Luis and Rio Grande Railroad | direct [44] | June 2003 | Sold December 2005 to Permian Basin Railways  [12]  [27]  [45] | 
| San Pedro and Southwestern Railway | StatesRail [20] | January 2002 | Sold October 2003 to Arizona Railroad Group  [12]  [46] | 
| South Central Tennessee Railroad | direct | February 1994 | Sold December 2000 to Henry G. Hohorst et al. [12]  [47] | 
| Texas-New Mexico Railroad | RailTex [17] | February 2000 | Sold May 2002 to Permian Basin Railways  [12]  [27]  [48] | 
| West Texas and Lubbock Railroad | direct | November 1995 | Leased May 2002 to Permian Basin Railways subsidiary West Texas and Lubbock Railway; sold December 2004 to Permian Basin Railways [12]  [27]  [48]  [49] |