| Nation | # | Club | Years of participation | Group stage qualification |
|---|
 Algeria (15) | 5 | USM Alger | 2005*, 2013, 2018 , 2023, 2024 | 2018, 2023, 2024 |
| 5 | JS Kabylie | 2008*, 2011, 2017, 2021 , 2022 | 2008, 2011, 2021 |
| 5 | ES Sétif | 2009 , 2011*, 2012, 2013, 2021 | 2009, 2013, 2021 |
| 4 | CR Belouizdad | 2004, 2010, 2018, 2020 | |
| 4 | ASO Chlef | 2006, 2007, 2015, 2024 | |
| 4 | MC Alger | 2007, 2008, 2015, 2017 | 2017 |
| 3 | JSM Béjaïa | 2008, 2009, 2013* | |
| 2 | MC Oran | 2005, 2016 | |
| 2 | NA Hussein Dey | 2006, 2019 | 2019 |
| 2 | CS Constantine | 2014, 2016 | |
| 2 | JS Saoura | 2022, 2023 | 2022 |
| 1 | CA Batna | 2011 | |
| 1 | MO Béjaïa | 2016 * | 2016 |
| 1 | USM Bel Abbès | 2019 | |
| 1 | Paradou AC | 2020 | 2020 |
 Angola (16) | 9 | Petro Atlético | 2004*, 2006, 2008, 2010*, 2013, 2014, 2015, 2018, 2019 | 2004*, 2006, 2019 |
| 8 | Inter Luanda | 2004, 2005, 2006, 2007, 2008*, 2011 *, 2012, 2022 | 2006, 2008, 2011, 2012 |
| 6 | Primeiro de Agosto | 2009*, 2010, 2011, 2021*, 2022, 2023* | 2009 |
| 4 | Sagrada Esperança | 2016, 2021, 2023, 2024 | 2024 |
| 2 | AS Aviação | 2005*, 2011 | |
| 2 | Benfica Luanda | 2007, 2015 | |
| 2 | Recreativo do Libolo | 2009, 2017 | 2017 |
| 1 | Petro do Huambo | 2004 | |
| 1 | Atlético do Namibe | 2005 | |
| 1 | Primeiro de Maio | 2008 | |
| 1 | Santos FC | 2009 | 2009 |
| 1 | Académica do Soyo | 2010 | |
| 1 | Recreativo da Caála | 2013 | |
| 1 | Desportivo da Huíla | 2014 | |
| 1 | Bravos do Maquis | 2021 | |
| 1 | Académica do Lobito | 2024 | 2024 |
 Benin (9) | 2 | Mogas 90 | 2004, 2005 | |
| 2 | AS Dragons | 2007, 2012 | |
| 2 | ESAE | 2020, 2021 | 2020 |
| 2 | Les Buffles du Borgou | 2022, 2023 | |
| 1 | UNB FC | 2008 | |
| 1 | USS Kraké | 2011 | |
| 1 | AS Police | 2015 | |
| 1 | Energie | 2018 | |
| 1 | AS Loto FC | 2024 | |
 Botswana (9) | 5 | Gaborone United | 2010*, 2013, 2014, 2016, 2024 | |
| 4 | Orapa United FC | 2017, 2019, 2021, 2022 | |
| 3 | Jwaneng Galaxy | 2018, 2020, 2021* | |
| 2 | Botswana Defence Force | 2005, 2015 | |
| 1 | Township Rollers | 2006 | |
| 1 | Notwane FC | 2007 | |
| 1 | UF Santos | 2010 | |
| 1 | Extension Gunners | 2012 | |
| 1 | Security Systems | 2023 | |
 Burkina Faso (10) | 5 | Étoile Filante | 2004, 2007, 2012, 2018, 2024 | |
| 3 | US Forces Armées | 2010, 2011, 2016 | |
| 3 | Rail Club du Kadiogo | 2013, 2017, 2023* | |
| 3 | Salitas | 2019, 2020, 2021 | 2019, 2021 |
| 2 | US Ouagadougou | 2006, 2009 | |
| 2 | AS SONABEL | 2014, 2017 | |
| 1 | ASF Bobo Dioulasso | 2005 | |
| 1 | RC Bobo Dioulasso | 2015 | |
| 1 | ASFA Yennenga | 2022 | |
| 1 | Douanes de Ouagadougou | 2023 | |
 Burundi (13) | 2 | AS Inter Star | 2008, 2011 | |
| 2 | Vital'O FC | 2009, 2019 | |
| 2 | Atlético Olympic | 2010, 2016 | |
| 2 | LLBA FC | 2012, 2013 | |
| 2 | Le Messager FC | 2015, 2017 | |
| 2 | Bumamuru | 2022, 2023 | |
| 1 | Prince Louis FC | 2007 | |
| 1 | Académie Tchité | 2014 | |
| 1 | Olympique Star | 2018 | |
| 1 | Rukinzo | 2020 | |
| 1 | Musongati | 2021 | |
| 1 | Flambeau du Centre | 2023* | |
| 1 | Aigle Noir | 2024 | |
 Cameroon (20) | 8 | Coton Sport | 2004*, 2007*, 2009*, 2010, 2012*, 2014 *, 2021 , 2022 | 2004*, 2014*, 2021, 2022 |
| 5 | Union Douala | 2005, 2007, 2009, 2012, 2014 | |
| 3 | Les Astres FC | 2006, 2007, 2008 | 2007 |
| 3 | Panthère du Ndé | 2010, 2013, 2015 | |
| 3 | Unisport FC | 2012, 2013, 2015 | |
| 3 | New Star de Douala | 2016, 2018, 2019 | |
| 2 | PWD Bamenda | 2004, 2023 | |
| 2 | Yong Sports Academy | 2014, 2017 | |
| 1 | Canon Yaoundé | 2004* | |
| 1 | Sable FC | 2004 | 2004 |
| 1 | Bamboutos FC | 2005 | |
| 1 | Impôts FC | 2006 | |
| 1 | Mount Cameroon FC | 2008 | |
| 1 | Aigle Royal | 2009 | |
| 1 | Tiko United | 2011 | |
| 1 | Fovu Club | 2011 | |
| 1 | UMS de Loum | 2016 | |
| 1 | APEJES Academy | 2017 | |
| 1 | Eding Sport | 2019 | |
| 1 | Stade Renard de Melong | 2020 | |
 Central African Rep. (4) | 4 | Anges de Fatima | 2009, 2010, 2013, 2019 | |
| 1 | TP USCA | 2006 | |
| 1 | DFC 8ème Arrondissement | 2011 | |
| 1 | Tempête Mocaf | 2012 | |
 Chad (7) | 4 | AS CotonTchad | 2007, 2010, 2019, 2020 | |
| 3 | Elect-Sport FC | 2013, 2015, 2020* | |
| 2 | Gazelle FC | 2005, 2021* | |
| 2 | Tourbillon FC | 2006, 2009 | |
| 2 | Renaissance FC | 2012, 2016, 2021 | |
| 1 | Foullah Edifice | 2011 | |
| 1 | ASLAD de Moundou | 2014 | |
| 1 | AS Santé d'Abéché | 2023 | |
 Comoros (7) | 2 | Volcan Club | 2015, 2017 | |
| 2 | Ngazi Sport | 2018, 2021 | |
| 1 | Élan Club | 2006 | |
| 1 | Fomboni Club | 2016 | |
| 1 | Miracle Club | 2019 | |
| 1 | Olympique de Missiri | 2022 | |
| 1 | Belle Lumière | 2024 W | |
 Congo (11) | 7 | Diables Noirs | 2004, 2006, 2013, 2016, 2019, 2022, 2023, 2024 | 2023, 2024 |
| 6 | AC Léopards | 2010, 2011, 2012 , 2014 *, 2015*, 2017 | 2012, 2014*, 2015* |
| 5 | Étoile du Congo | 2007*, 2015, 2017, 2020, 2021 | |
| 4 | CARA Brazzaville | 2014, 2015, 2017, 2018 | 2018 |
| 2 | JS Talangaï | 2007, 2008 | |
| 2 | AS Otohô | 2019*, 2022* | 2019*, 2022* |
| 1 | Munisport de Pointe-Noire | 2005 | |
| 1 | Club 57 Tourbillon | 2009 | |
| 1 | AS Kondzo | 2014 | |
| 1 | Vita Club Mokanda | 2016 | |
| 1 | CS La Mancha | 2018 | |
 DR Congo (14) | 11 | DC Motema Pembe | 2004, 2007, 2010, 2011, 2013, 2018, 2019, 2020, 2021, 2022, 2023 | 2011, 2020, 2023 |
| 8 | TP Mazembe | 2004, 2006, 2007*, 2013 *, 2016 *, 2017 *, 2022*, 2023* | 2007, 2013*, 2016*, 2017*, 2022*, 2023* |
| 7 | FC Lupopo | 2005, 2006*, 2011, 2012, 2016, 2023, 2024 | 2006, 2023 |
| 6 | AS Vita Club | 2008, 2009, 2010, 2015, 2018 *, 2022 | 2009, 2018* |
| 5 | AS Maniema Union | 2008, 2018, 2020, 2021, 2022* | |
| 3 | CS Don Bosco | 2013, 2014, 2016 | |
| 2 | OC Bukavu Dawa | 2007, 2009 | |
| 2 | FC MK Etanchéité | 2014, 2015 | |
| 2 | SM Sanga Balende | 2015*, 2017 | |
| 1 | SC Cilu | 2005 | |
| 1 | AS Kabasha | 2006 | |
| 1 | US Tshinkunku | 2012 | |
| 1 | Renaissance du Congo | 2017 | |
| 1 | AS Nyuki | 2019 | |
 Côte d'Ivoire (18) | 10 | ASEC Mimosas | 2009*, 2011*, 2012, 2013, 2014*, 2015, 2017, 2018*, 2022*, 2023* | 2011*, 2014*, 2018*, 2022*, 2023* |
| 5 | Séwé Sport | 2006, 2010, 2011, 2012, 2014 * | 2014* |
| 4 | Africa Sports | 2005*, 2011, 2016, 2018 | |
| 3 | Stella Club d'Adjamé | 2004, 2005, 2013 | |
| 3 | Issia Wazi FC | 2007, 2008, 2010 | |
| 3 | SC Gagnoa | 2016, 2017, 2023 | |
| 3 | FC San Pédro | 2019, 2020, 2021 | 2020 |
| 2 | CO Bouaflé | 2004, 2005 | |
| 2 | JC Abidjan | 2006, 2009 | |
| 2 | AS Tanda | 2017*, 2018 | |
| 1 | AS Denguélé | 2007 | |
| 1 | ES Bingerville | 2008 | |
| 1 | SO Armée | 2009 | |
| 1 | AF Amadou Diallo | 2012* | |
| 1 | Williamsville AC | 2018* | 2018* |
| 1 | Stade d'Abidjan | 2019 | |
| 1 | RC Abidjan | 2021* | |
| 1 | AFAD Djékanou | 2024 | |
 Djibouti (3) | 1 | FC Dikhil | 2022 | |
| 1 | ASAS Télécom | 2023 | |
| 1 | Arta Solar | 2024 | |
 Egypt (14) | 6 | Ismaily SC | 2004, 2005, 2007, 2011, 2013, 2014 | 2005, 2007 |
| 5 | Haras El-Hodood | 2006, 2008, 2009, 2010, 2011 | 2008, 2009, 2010 |
| 5 | ENPPI Club | 2007, 2009 , 2012, 2013, 2016 | 2009 |
| 5 | Al-Masry | 2017, 2018 , 2019, 2020 , 2022 | 2018, 2020, 2022 |
| 4 | Zamalek | 2015 , 2018, 2019 , 2024 | 2015, 2019, 2024 |
| 4 | Pyramids | 2020 , 2021 , 2022 , 2023 | 2020, 2021, 2022, 2023 |
| 3 | Al Ahly | 2009*, 2014 *, 2015 * | 2014*, 2015* |
| 2 | El Mokawloon | 2005, 2021 | |
| 2 | Petrojet FC | 2010, 2015 | |
| 2 | Future | 2023, 2024 | 2023, 2024 |
| 1 | Al-Ittihad Alexandria | 2006 | |
| 1 | Wadi Degla | 2014 | |
| 1 | Misr Lel-Makkasa | 2016 | |
| 1 | Smouha | 2017 | 2017 |
 Equatorial Guinea (15) | 3 | Deportivo Mongomo | 2004, 2009, 2016 | |
| 3 | Akonangui FC | 2006, 2008, 2020 | |
| 2 | CD Elá Nguema | 2005, 2011 | |
| 2 | The Panthers FC | 2013, 2014 | |
| 2 | Cano Sport | 2020*, 2024 | |
| 2 | Futuro Kings | 2021, 2022 | |
| 1 | Renacimiento FC | 2006* | 2006 |
| 1 | San Pedro Claver | 2007 | |
| 1 | Dragón FC | 2010 | |
| 1 | Atlético Semu | 2012 | |
| 1 | Vegetarianos FC | 2015 | |
| 1 | Racing de Micomeseng | 2017 | |
| 1 | Deportivo Niefang | 2018 | |
| 1 | Deportivo Unidad | 2019 | |
| 1 | Inter de Litoral Academy | 2023 | |
 Eswatini (5) | 5 | Young Buffaloes | 2018, 2019, 2020, 2021*, 2022, 2024 W | |
| 4 | Royal Leopards | 2012, 2015, 2022*, 2023* | 2022* |
| 3 | Mbabane Highlanders | 2010, 2011, 2013 | |
| 3 | Mbabane Swallows | 2017, 2021, 2023 | 2017 |
| 1 | Malanti Chiefs | 2009 | |
 Ethiopia (11) | 5 | Defence Force SC | 2007, 2014, 2016, 2017, 2019 | |
| 3 | Dedebit FC | 2011, 2013, 2015 | |
| 3 | Saint George SC | 2012, 2013*, 2018* | 2013* |
| 3 | Fasil Kenema | 2020, 2021, 2023 | |
| 2 | Ethiopian Coffee FC | 2004, 2022 | |
| 2 | CBE SA | 2005, 2010 | |
| 1 | Awassa City FC | 2006 | |
| 1 | Harar Beer Bottling | 2008 | |
| 1 | Welayta Dicha | 2018 | |
| 1 | Jimma Aba Jifar | 2019* | |
| 1 | Bahir Dar Kenema | 2024 | |
 Gabon (12) | 5 | CF Mounana | 2014, 2015, 2016, 2017, 2018* | 2017 |
| 3 | AS Mangasport | 2008, 2012, 2018 | |
| 2 | USM Libreville | 2004, 2009 | |
| 2 | FC 105 | 2005, 2010 | 2005 |
| 1 | Sogéa FC | 2006 | |
| 1 | Delta Téléstar FC | 2007 | |
| 1 | Missile FC | 2011 | |
| 1 | US Bitam | 2013 | |
| 1 | Akanda FC | 2017 | |
| 1 | Cercle Mbéri Sportif | 2019 | |
| 1 | AS Pélican | 2020 | |
| 1 | AS Bouenguidi | 2021* | |
 Gambia (5) | 4 | Gamtel FC | 2012, 2013, 2014, 2021 | |
| 2 | Wallidan FC | 2004, 2016 | |
| 2 | Banjul Hawks | 2007, 2018 | |
| 2 | Ports Authority FC | 2008, 2017 | |
| 1 | Armed Forces | 2019 | |
 Ghana (13) | 6 | Asante Kotoko | 2004 *, 2008, 2018, 2019, 2020*, 2021 | 2004*, 2008, 2019 |
| 4 | Hearts of Oak | 2004 *, 2015, 2022*, 2023 | 2004* |
| 3 | King Faisal Babes | 2004, 2005, 2006 | 2005 |
| 3 | Ashanti Gold | 2011, 2020, 2021 | |
| 2 | Medeama SC | 2014, 2016 | 2016 |
| 1 | Liberty Professionals | 2004 | |
| 1 | Berekum Arsenal | 2006 | |
| 1 | Tema Youth | 2007 | |
| 1 | New Edubiase United | 2013 | |
| 1 | Ebusua Dwarfs | 2014 | |
| 1 | Bechem United | 2017 | |
| 1 | Aduana Stars | 2018* | 2018* |
| 1 | Dreams FC | 2024 | 2024 |
 Guinea (14) | 5 | Kaloum Star | 2006, 2015*, 2016, 2017, 2021 | |
| 4 | Club Industriel | 2005, 2014, 2019, 2021 | |
| 4 | Horoya AC | 2014*, 2015, 2017*, 2020 * | 2017*, 2020* |
| 3 | Satellite FC | 2007, 2008, 2009 | |
| 3 | FC Séquence | 2011, 2012, 2013 | |
| 2 | Wakriya | 2019, 2022 | |
| 2 | AS Ashanti Golden Boys | 2022, 2023 | |
| 2 | Milo | 2023, 2024 | |
| 1 | Étoile de Guinée | 2004 | |
| 1 | Fello Star | 2005* | 2005 |
| 1 | Baraka Djoma | 2010 | |
| 1 | Hafia | 2018 | |
| 1 | Santoba | 2020 | |
| 1 | Académie SOAR | 2024 | 2024 |
 Guinea-Bissau (1) | 3 | Sport Bissau e Benfica | 2007, 2009, 2010 | |
 Kenya (10) | 8 | Gor Mahia | 2009, 2012, 2013, 2018*, 2019 *, 2020*, 2021*, 2022 | 2018*, 2019* |
| 3 | AFC Leopards | 2010, 2014, 2018 | |
| 2 | Sofapaka FC | 2011, 2015 | |
| 2 | Bandari | 2016, 2020 | |
| 1 | Chemelil Sugar FC | 2004 | |
| 1 | Nairobi City Stars | 2006 | |
| 1 | Ulinzi Stars | 2017 | |
| 1 | Kariobangi Sharks | 2019 | |
| 1 | Tusker | 2022* | |
| 1 | Kakamega Homeboyz | 2024 | |
 Lesotho (1) | 1 | Bantu | 2019* | |
 Liberia (12) | 3 | Barrack Young Controllers | 2013, 2016, 2017* | |
| 3 | LISCR | 2019, 2020, 2023 | |
| 2 | Monrovia Club Breweries | 2017, 2022 | |
| 1 | National Port Authority Anchors | 2007 | |
| 1 | Monrovia Black Star | 2008 | |
| 1 | Mighty Barrolle | 2009 | |
| 1 | Invincible Eleven | 2012 | |
| 1 | Red Lions | 2014 | |
| 1 | FC Fassell | 2015 | |
| 1 | ELWA United | 2018 | |
| 1 | LPRC Oilers | 2022* | |
| 1 | Watanga | 2024 | |
 Libya (9) | 11 | Al-Ittihad | 2005, 2008*, 2010 *, 2011*, 2015, 2016, 2018, 2019, 2020, 2021, 2022* | 2010, 2022* |
| 8 | Al-Ahli Tripoli | 2007, 2009*, 2010, 2014, 2016*, 2019, 2021, 2022, 2023* | 2016*, 2022 |
| 6 | Al-Nasr | 2004, 2011, 2013, 2019*, 2020 *, 2023 | 2020* |
| 3 | Al Akhdar | 2006, 2008, 2023 | 2023 |
| 2 | Al-Ahly Benghazi | 2009, 2021* | 2021* |
| 2 | Al-Hilal Beghazi | 2017, 2024 | 2024 |
| 1 | Khaleej Sirte | 2009 | |
| 1 | Al Tarsana | 2010 | |
| 1 | Abu Salim | 2024 | 2024 |
 Madagascar (12) | 5 | AS Adema | 2008, 2009, 2010, 2011, 2016 | |
| 5 | ASSM Elgeco Plus | 2014, 2015, 2017, 2019, 2023 | |
| 2 | USCA Foot | 2005, 2006 | |
| 2 | CNaPS Sport | 2017, 2020 | |
| 2 | Fosa Juniors | 2018, 2020* | |
| 1 | Léopards de Transfoot | 2004 | |
| 1 | USJF Ravinala | 2006 | |
| 1 | AJESAIA | 2007 | |
| 1 | Tana FC | 2012 | |
| 1 | TCO Boeny | 2013 | |
| 1 | CFFA | 2022 | |
| 1 | Elgeco Plus | 2024 | |
 Mali (13) | 11 | Djoliba AC | 2008, 2009, 2010, 2012 , 2014, 2015, 2017, 2018, 2019, 2020, 2023* | 2010, 2012, 2018, 2020 |
| 10 | Stade Malien | 2009 , 2010, 2012 , 2013 , 2015, 2016, 2019*, 2021*, 2022*, 2024 | 2009, 2012, 2013, 2015, 2024 |
| 4 | Real Bamako | 2011, 2012, 2014, 2023 | 2014, 2023 |
| 4 | Onze Créateurs | 2013, 2015, 2017, 2018 | |
| 3 | CO Bamako | 2010, 2012, 2014 | |
| 2 | AS Bamako | 2006, 2007 | |
| 1 | AS Nianan | 2005 | |
| 1 | JS Centre Salif Keita | 2011 | |
| 1 | US Bougouni | 2013 | |
| 1 | AS Bakaridjan | 2016 | |
| 1 | USFAS Bamako | 2016 | |
| 1 | Yeelen Olympique | 2021 | |
| 1 | Binga FC | 2022 | |
 Mauritania (7) | 3 | ASAC Concorde | 2005, 2007, 2022 | |
| 3 | FC Nouadhibou | 2018, 2020*, 2022* | 2020* |
| 2 | FC Tevragh-Zeina | 2011, 2021 | |
| 2 | Nouakchott King's | 2019, 2023 | |
| 1 | Entente Sebkha | 2004 | |
| 1 | ASC Snim | 2020 | |
| 1 | AS Douanes Mauritania | 2024 | |
 Mauritius (8) | 2 | Savanne SC | 2005, 2005 | |
| 2 | Petite Rivière Noire SC | 2008, 2015 | |
| 2 | Pamplemousses SC | 2010, 2017 | |
| 2 | AS Port-Louis 2000 | 2017, 2018 | |
| 1 | Pointe aux Sables Mates | 2006 | |
| 1 | Curepipe Starlight | 2007 | |
| 1 | AS de Vacoas-Phoenix | 2009 | |
| 1 | Bolton City | 2020 | |
 Morocco (15) | 8 | RS Berkane | 2015, 2018 , 2019 , 2020 , 2021, 2022 , 2023, 2024 | 2018, 2019, 2020, 2021, 2022, 2024 |
| 7 | FAR Rabat | 2004, 2005 *, 2006 *, 2010, 2013, 2022, 2023 | 2005*, 2006*, 2023 |
| 7 | FUS de Rabat | 2010 , 2011, 2013*, 2015, 2016 , 2017 *, 2024 | 2010, 2013*, 2016, 2017 |
| 5 | Raja Casablanca | 2006, 2015*, 2018 , 2019, 2021* | 2018, 2019, 2021* |
| 5 | MAS Fez | 2009, 2011 , 2012*, 2014, 2017 | 2011 |
| 4 | Wydad Casablanca | 2004, 2007*, 2012, 2013 | 2012 |
| 3 | Olympique Khouribga | 2005, 2006, 2008 | 2006 |
| 3 | Hassania Agadir | 2007, 2019 , 2020 | 2019, 2020 |
| 2 | COD Meknès | 2005, 2012 | |
| 2 | Difaâ El Jadidi | 2011, 2014 | |
| 2 | IR Tanger | 2017, 2019* | |
| 1 | Rachad Bernoussi | 2008 | |
| 1 | Ittihad Khemisset | 2009* | |
| 1 | Kawkab Marrakech | 2016 | 2016 |
| 1 | TAS Casablanca | 2021 | |
 Mozambique (9) | 4 | Ferroviário da Beira | 2006, 2014, 2015, 2023 | |
| 4 | União Desportiva do Songo | 2017, 2018*, 2020*, 2021 | 2018* |
| 3 | Ferroviário de Maputo | 2005, 2012, 2024 | |
| 2 | Ferroviário de Nampula | 2004, 2008 | |
| 2 | Costa do Sol | 2010, 2018 | |
| 2 | LD Maputo | 2013, 2016 | |
| 1 | Companhia Têxtil do Punguè | 2007 | |
| 1 | Atlético Muçulmano da Matola | 2009 | |
| 1 | CD Maxaquene | 2011 | |
 Namibia (1) | 2 | African Stars | 2014, 2019* | |
 Niger (9) | 7 | Sahel SC | 2006, 2007, 2011, 2012, 2013, 2015, 2018 | |
| 3 | USGN | 2020, 2021, 2022* | |
| 2 | AS GNN | 2008, 2019 | |
| 2 | AS FAN | 2009, 2010 | 2010 |
| 2 | ASN Nigelec | 2014, 2023* | |
| 2 | AS SONIDEP | 2016, 2021* | |
| 2 | Douanes Niamey | 2017, 2024 W | |
| 1 | Olympic FC | 2004 | |
| 1 | AS Police | 2022 | |
 Nigeria (23) | 6 | Enugu Rangers | 2004, 2005, 2013, 2017, 2019, 2020 | 2004, 2019, 2020 |
| 5 | Enyimba FC | 2010, 2018 , 2020 *, 2021*, 2022 | 2018, 2020*, 2021* |
| 5 | Rivers United | 2017, 2021, 2022*, 2023*, 2024 | 2017, 2023*, 2024 |
| 4 | Dolphins FC | 2005 , 2007, 2008, 2015 | 2005, 2007 |
| 4 | Warri Wolves | 2010, 2012, 2014, 2015 | |
| 3 | Lobi Stars | 2004, 2006, 2013 | |
| 3 | Heartland FC | 2006, 2012, 2013 | |
| 3 | Bayelsa United | 2009 , 2014, 2022 | 2009 |
| 2 | Nasarawa United | 2007, 2016 | |
| 2 | Kwara United | 2007, 2023 | 2007 |
| 2 | Wikki Tourists | 2008, 2017 | |
| 2 | Akwa United | 2016, 2018 | |
| 2 | Plateau United | 2018*, 2023* | |
| 1 | Bendel Insurance | 2005 | |
| 1 | Ocean Boys FC | 2009 | |
| 1 | Sunshine Stars | 2011 | 2011 |
| 1 | Kaduna United | 2011 | 2011 |
| 1 | Ifeanyi Ubah | 2017 | |
| 1 | MFM | 2018* | |
| 1 | Niger Tornadoes | 2020 | |
| 1 | Kano Pillars | 2021 | |
| 1 | Remo Stars | 2023 | |
| 1 | Bendel Insurance | 2024 | |
 Réunion (2) | 1 | Saint-Pauloise FC | 2007 | |
| 1 | US Sainte-Marienne | 2011 | |
 Rwanda (8) | 6 | Rayon Sports | 2006, 2008, 2015, 2017, 2018 *, 2024 | 2018* |
| 5 | APR FC | 2004, 2005, 2009, 2018, 2022* | |
| 5 | AS Kigali | 2014, 2020, 2021, 2022, 2023 | |
| 2 | SC Kiyovu Sports | 2004, 2012 | |
| 2 | ATRACO FC | 2007, 2010 | |
| 2 | Police FC | 2013, 2016 | |
| 1 | Etincelles FC | 2011 | |
| 1 | Mukura Victory Sports | 2019 | |
 São Tomé and Príncipe (1) | 1 | CD Guadalupe | 2013 | |
 Senegal (19) | 6 | ASC Diaraf | 2009, 2010, 2011, 2014, 2019*, 2021 | 2021 |
| 4 | Génération Foot | 2016, 2018*, 2019, 2020* | |
| 3 | Casa Sports | 2008, 2012, 2024 | |
| 2 | AS Douanes | 2004, 2006 | |
| 1 | ASC Thiès | 2004 | |
| 1 | Dakar UC | 2005 | |
| 1 | ASEC Ndiambour | 2005 | |
| 1 | CS Sucrière | 2006 | |
| 1 | ASC Port Autonome | 2006 | |
| 1 | US Gorée | 2007 | |
| 1 | US Ouakam | 2007 | |
| 1 | ASC Linguère | 2008 | |
| 1 | ASC Yakaar | 2009 | |
| 1 | Touré Kunda Foot-Pro | 2011 | |
| 1 | ASC HLM | 2013 | |
| 1 | Olympique de Ngor | 2015 | |
| 1 | ASC Niarry Tally | 2017 | |
| 1 | Mbour Petite-Côte | 2018 | |
| 1 | Diambars FC | 2022 | |
 Seychelles (9) | 4 | St Michel United | 2007, 2014, 2017, 2023 | |
| 3 | Anse Réunion | 2008, 2013, 2018 | |
| 2 | Saint Louis Suns United | 2004, 2020 | |
| 2 | Côte d'Or | 2015, 2020* | |
| 2 | La Passe | 2023*, 2024 | |
| 1 | Red Star FC | 2005 | |
| 1 | Super Magic Brothers | 2006 | |
| 1 | Light Stars | 2016 | |
| 1 | Northern Dynamo | 2019 | |
 Sierra Leone (6) | 3 | FC Kallon | 2012, 2023, 2024 | |
| 2 | Ports Authority FC | 2007, 2011 | |
| 2 | RSL Armed Forces FC | 2014, 2017 | |
| 1 | Mighty Blackpool | 2006 | |
| 1 | Central Parade FC | 2010 | |
| 1 | Kamboi Eagles | 2015 | |
 Somalia (2) | 3 | Horseed | 2021, 2022, 2024 | |
| 1 | Mogadishu City | 2020* | |
 South Africa (18) | 7 | Bidvest Wits | 2004, 2011, 2015, 2016, 2017, 2018*, 2020 | 2020 |
| 7 | Supersport United | 2005, 2010, 2013, 2014, 2017 , 2018, 2024 | 2017, 2024 |
| 4 | Orlando Pirates | 2004, 2015 , 2021 , 2022 | 2015, 2021, 2022 |
| 4 | Mamelodi Sundowns | 2007, 2008, 2009, 2016 | 2007 |
| 3 | Kaizer Chiefs | 2005, 2014, 2019 | |
| 2 | Ajax Cape Town | 2008, 2016 | |
| 2 | Platinum Stars | 2008, 2017 | 2017 |
| 2 | Cape Town City | 2018, 2023* | |
| 1 | Santos FC | 2004 | 2004 |
| 1 | Moroka Swallows | 2010 | |
| 1 | Black Leopards | 2012 | |
| 1 | Free State Stars | 2019 | |
| 1 | TS Galaxy | 2020 | |
| 1 | Bloemfontein Celtic | 2021 | |
| 1 | Tshakuma Tsha Madzivhandila | 2022 | |
| 1 | Royal AM | 2023 | |
| 1 | Marumo Gallants | 2023 | 2023 |
| 1 | Sekhukhune United | 2024 | 2024 |
 South Sudan (10) | 2 | Atlabara | 2016, 2022 | |
| 2 | Al-Merreikh Juba | 2019, 2024 | |
| 1 | El-Nasir | 2013 | |
| 1 | Al-Malakia | 2014 | |
| 1 | Al-Ghazal | 2015 | |
| 1 | Wau Salaam | 2017 | |
| 1 | Al-Hilal Juba | 2018 | |
| 1 | Amarat United | 2020 | |
| 1 | Al Rabita | 2021 | |
| 1 | Al Hilal Wau | 2023 | |
 Sudan (14) | 9 | Al-Ahly Shendi | 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 | 2012 |
| 8 | Al-Merrikh | 2004, 2005, 2006, 2007 , 2008, 2010, 2012 , 2016 | 2007, 2008, 2012 |
| 6 | Al-Hilal | 2004, 2006, 2010 , 2012 , 2018*, 2019 * | 2004, 2010, 2012, 2018*, 2019* |
| 6 | Al Khartoum SC | 2010, 2011, 2013, 2015, 2016, 2020 | |
| 4 | Al-Hilal Al-Ubayyid | 2017 , 2018, 2019, 2021 | 2017 |
| 3 | Alamal Atbara | 2010, 2012, 2021 | |
| 2 | Hay Al-Arab SC | 2009, 2024 W | |
| 1 | Al Neel Al-Hasahisa | 2011 | |
| 1 | Al-Ahli Atbara | 2014 | |
| 1 | Hay Al-Wadi SC | 2022 | |
| 1 | Al-Ahli Merowe | 2022 | |
| 1 | Hilal Alsahil | 2023 | |
| 1 | Al-Ahli Khartoum | 2023 | |
| 1 | Haidoub | 2024 | |
 Tanzania (11) | 9 | Young Africans | 2007, 2008, 2011, 2015, 2016, 2017, 2018*, 2020*, 2023* | 2016, 2018*, 2023* |
| 8 | Azam FC | 2013, 2014, 2016, 2017, 2020, 2022, 2023, 2024 | |
| 6 | Simba SC | 2007, 2010, 2011, 2012, 2018, 2022* | 2022* |
| 2 | Mtibwa Sugar FC | 2004, 2019 | |
| 2 | Prisons FC | 2005, 2009 | |
| 1 | Moro United | 2006 | |
| 1 | KMC | 2020 | |
| 1 | Namungo | 2021 | 2021 |
| 1 | Biashara United | 2022 | |
| 1 | Geita Gold | 2023 | |
| 1 | Singida Fountain Gate | 2024 | |
 Togo (9) | 4 | ASC Kara | 2020*, 2022, 2023, 2024 | |
| 3 | Dynamic Togolais | 2004, 2006, 2011 | |
| 3 | AS Douanes | 2005, 2013, 2014 | |
| 2 | AS Togo-Port | 2007, 2015 | |
| 2 | Maranatha FC | 2007, 2020 | |
| 1 | US Masséda | 2008 | |
| 1 | Gomido | 2019 | |
| 1 | UFC Sokodé | 2021 | |
| 1 | ASKO Kara | 2023* | 2023* |
 Tunisia (14) | 13 | CS Sfaxien | 2007 , 2008 , 2009, 2010 , 2012, 2013 , 2015, 2017 , 2019 , 2020, 2021*, 2022, 2023 | 2007, 2008, 2010, 2013, 2015, 2017, 2019, 2021*, 2022 |
| 10 | Étoile du Sahel | 2006 , 2008 , 2010, 2011, 2013, 2014, 2015, 2016 , 2019 , 2021 | 2006, 2008, 2013, 2014, 2015, 2016, 2019, 2021 |
| 9 | Club Africain | 2004, 2008, 2011 , 2012, 2015, 2017 , 2018, 2023, 2024 | 2008, 2011, 2017, 2024 |
| 4 | Espérance de Tunis | 2006, 2008, 2015, 2016 | 2006, 2015 |
| 3 | US Ben Guerdane | 2018, 2020, 2022 | |
| 2 | Stade Tunisien | 2004, 2009 | |
| 2 | EGS Gafsa | 2007, 2009 | |
| 2 | Olympique Béja | 2011, 2024 | |
| 2 | CA Bizertin | 2013 , 2014 | 2013 |
| 2 | US Monastir | 2021, 2023* | 2023* |
| 1 | AS Marsa | 2005 | 2005 |
| 1 | JS Kairouan | 2005 | |
| 1 | ES Zarzis | 2006 | |
| 1 | Stade Gabèsien | 2016 | |
 Uganda (9) | 7 | KCCA | 2005, 2009, 2017, 2019, 2020*, 2021, 2024 | 2017 |
| 3 | Uganda Revenue Authority SC | 2006, 2015, 2022 | |
| 2 | Express FC | 2004, 2008 | |
| 2 | Victors FC | 2009, 2011 | |
| 2 | Vipers SC | 2017, 2019* | |
| 1 | SC Victoria University | 2014 | |
| 1 | SC Villa | 2016 | |
| 1 | Proline | 2020 | |
| 1 | Bul | 2023 | |
 Zambia (12) | 7 | ZESCO United | 2006, 2010, 2011, 2014, 2017 , 2019*, 2023 | 2017, 2019* |
| 6 | Green Buffaloes | 2004, 2005, 2007, 2008, 2018, 2019 | |
| 5 | Zanaco | 2010, 2016, 2018*, 2020 , 2022* | 2010, 2020 |
| 4 | Red Arrows | 2005, 2009, 2012, 2022 | |
| 4 | Nkana | 2014, 2018, 2019 *, 2021* | 2014, 2019*, 2021* |
| 3 | Green Eagles | 2019, 2020*, 2021 | |
| 2 | Power Dynamos | 2013, 2015 | |
| 1 | Nchanga Rangers | 2011 | |
| 1 | Buildcon | 2020 | |
| 1 | NAPSA Stars | 2021 | 2021 |
| 1 | Kabew Warriors FC | 2022 | |
| 1 | Maestro United | 2024 | |
 Zanzibar (13) | 3 | JKU SC | 2006, 2016, 2024 | |
| 2 | Kipanga FC | 2005, 2023 | |
| 2 | Mundu SC | 2007, 2009 | |
| 2 | KVZ SC | 2017, 2021 | |
| 2 | Zimamoto | 2018, 2019 | |
| 1 | Chipukizi FC | 2008 | |
| 1 | Miembeni SC | 2010 | |
| 1 | KMKM FC | 2011 | |
| 1 | Jamhuri FC | 2012 | |
| 1 | Chuoni FC | 2014 | |
| 1 | Polisi SC | 2015 | |
| 1 | Malindi | 2020 | |
| 1 | Mafunzpo | 2022 | |
 Zimbabwe (12) | 2 | Dynamos FC | 2004, 2012 | |
| 2 | Highlanders FC | 2008, 2011 | |
| 2 | CAPS United | 2009, 2010 | |
| 2 | FC Platinum | 2015, 2021* | |
| 1 | Mwana Africa | 2007 | |
| 1 | Lengthens FC | 2010 | |
| 1 | Motor Action FC | 2012 | |
| 1 | Hwange Colliery FC | 2012 | |
| 1 | How Mine FC | 2014 | |
| 1 | Harare City | 2016 | |
| 1 | Ngezi Platinum | 2017 | |
| 1 | Triangle United | 2020 | |
|
Club Sfaxien 
TP Mazembe 
RS Berkane 
Hearts of Oak 
Stade Malien 
AC Léopards 
Al Ahly 
USM Alger 
Orlando Pirates 
Dolphins FC 
Al-Merrikh 
Séwé Sport 
Young Africans 
Coton Sport 
Al-Ittihad 
Interclube 
Horoya 
