NeXML format

Last updated
NeXML
Filename extensions .nexml
Internet media type text/x-nexml+xml
Developed byRutger A. Vos, et al.
Initial release1 July 2012(9 years ago) (2012-07-01)
Type of format bioinformatics
Extended from XML
Open format?Yes
Website nexml.org

NeXML is an exchange standard for representing phyloinformatic data. [1] It was inspired by the widely used Nexus file format but uses XML to produce a more robust format for rich phylogenetic data. Advantages include syntax validation, semantic annotation, and web services. The format is broadly supported and has libraries in many popular programming languages for bioinformatics.

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References

  1. Vos, Rutger A.; Balhoff, James P.; Caravas, Jason A.; Holder, Mark T.; Lapp, Hilmar; Maddison, Wayne P.; Midford, Peter E.; Priyam, Anurag; Sukumaran, Jeet (2012-07-01). "NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata". Systematic Biology. 61 (4): 675–689. doi:10.1093/sysbio/sys025. ISSN   1063-5157. PMC   3376374 . PMID   22357728.