Filename extensions | .nexml |
---|---|
Internet media type | text/x-nexml+xml |
Developed by | Rutger A. Vos, et al. |
Initial release | 1 July 2012 |
Type of format | bioinformatics |
Extended from | XML |
Open format? | Yes |
Website | nexml |
NeXML is an exchange standard for representing phyloinformatic data. [1] It was inspired by the widely used Nexus file format but uses XML to produce a more robust format for rich phylogenetic data. Advantages include syntax validation, semantic annotation, and web services. The format is broadly supported and has libraries in many popular programming languages for bioinformatics.
Extensible Markup Language (XML) is a markup language and file format for storing, transmitting, and reconstructing arbitrary data. It defines a set of rules for encoding documents in a format that is both human-readable and machine-readable. The World Wide Web Consortium's XML 1.0 Specification of 1998 and several other related specifications—all of them free open standards—define XML.
TextEdit is an open-source word processor and text editor, first featured in NeXT's NeXTSTEP and OPENSTEP. It is now distributed with macOS since Apple Inc.'s acquisition of NeXT, and available as a GNUstep application for other Unix-like operating systems such as Linux. It is powered by Apple Advanced Typography.
A web service (WS) is either:
RSS is a web feed that allows users and applications to access updates to websites in a standardized, computer-readable format. Subscribing to RSS feeds can allow a user to keep track of many different websites in a single news aggregator, which constantly monitor sites for new content, removing the need for the user to manually check them. News aggregators can be built into a browser, installed on a desktop computer, or installed on a mobile device.
A document file format is a text or binary file format for storing documents on a storage media, especially for use by computers. There currently exist a multitude of incompatible document file formats.
The International Press Telecommunications Council (IPTC), based in London, United Kingdom, is a consortium of the world's major news agencies, other news providers and news industry vendors and acts as the global standards body of the news media.
XFA stands for XML Forms Architecture, a family of proprietary XML specifications that was suggested and developed by JetForm to enhance the processing of web forms. It can be also used in PDF files starting with the PDF 1.5 specification. The XFA specification is referenced as an external specification necessary for full application of the ISO 32000-1 specification. The XML Forms Architecture was not standardized as an ISO standard, and has been deprecated in PDF 2.0.
An XML database is a data persistence software system that allows data to be specified, and sometimes stored, in XML format. This data can be queried, transformed, exported and returned to a calling system. XML databases are a flavor of document-oriented databases which are in turn a category of NoSQL database.
The following tables compare general and technical information for a number of document markup languages. Please see the individual markup languages' articles for further information.
JSON is an open standard file format and data interchange format that uses human-readable text to store and transmit data objects consisting of attribute–value pairs and arrays. It is a commonly used data format with diverse uses in electronic data interchange, including that of web applications with servers.
In the macOS, iOS, NeXTSTEP, and GNUstep programming frameworks, property list files are files that store serialized objects. Property list files use the filename extension .plist
, and thus are often referred to as p-list files.
Design Web Format (DWF) is a file format developed by Autodesk for the efficient distribution and communication of rich design data to anyone who needs to view, review, or print design files. Because DWF files are highly compressed, they are smaller and faster to transmit than design files, without the overhead associated with complex CAD drawings. With DWF functionality, publishers of design data can limit the specific design data and plot styles to only what they want recipients to see and can publish multisheet drawing sets from multiple AutoCAD drawings in a single DWF file. They can also publish 3D models from most Autodesk design applications.
The extensible NEXUS file format is widely used in bioinformatics. It stores information about taxa, morphological and molecular characters, distances, genetic codes, assumptions, sets, trees, etc. Several popular phylogenetic programs such as PAUP*, MrBayes, Mesquite, MacClade and SplitsTree use this format.
Oracle XML Publisher (XMLP) is an Oracle Corporation technology originally developed to solve the reporting problems faced by Oracle applications. Osama Elkady from the Applications Technology Group and Tim Dexter from the Financials Group were the main drivers for the product. It was first released with Oracle E-Business Suite 11.5.10 in 2003. Since then it has been integrated into most of Oracle Products including JD Edwards EnterpriseOne application 8.12 and PeopleSoft Enterprise 9, and as a standalone version, XML Publisher Enterprise with no dependency on Oracle Applications. When XML Publisher became part of the Oracle BI Enterprise Edition Suite it was re-branded as Oracle BI Publisher.
The Microsoft Office XML formats are XML-based document formats introduced in versions of Microsoft Office prior to Office 2007. Microsoft Office XP introduced a new XML format for storing Excel spreadsheets and Office 2003 added an XML-based format for Word documents.
Data exchange is the process of taking data structured under a source schema and transforming it into a target schema, so that the target data is an accurate representation of the source data. Data exchange allows data to be shared between different computer programs.
NeXus is a data format for experimental science that is commonly used in the neutron, x-ray, and muon scientific communities. It is being developed as an international standard by scientists and programmers representing major scientific facilities in Europe, Asia, Australia, and North America in order to facilitate greater cooperation in the analysis and visualization of scientific data. Technically, NeXus is a data model rather than a file format, because it describes how data should be organised and structured within a file and has little to say about how that data is encoded for storage. A NeXus file can be mapped into many different container formats, though the preferred and best supported backend is HDF5. XML is used for demonstration purposes mainly.
NeTEx is the CEN Technical standard for exchanging Public Transport Information as XML documents. It provides a W3C XML schema based on the Transmodel abstract model of common public transport concepts and data structures and can be used to exchange many different kinds of data between passenger information systems, including data describing for stops, facilities, timetabling and fares. Such data can be used by both operational management systems and customer facing systems for journey planning etc.