ZNF337

Last updated
ZNF337
Identifiers
Aliases ZNF337 , zinc finger protein 337
External IDs HomoloGene: 49427; GeneCards: ZNF337; OMA:ZNF337 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001290261
NM_015655

n/a

RefSeq (protein)

NP_001277190
NP_056470

n/a

Location (UCSC) Chr 20: 25.67 – 25.7 Mb n/a
PubMed search [2] n/a
Wikidata
View/Edit Human

ZNF337, also known as zinc finger protein 337, is a protein that in humans is encoded by the ZNF337 gene. The ZNF337 gene is located on human chromosome 20 (20p11.21). Its protein contains 751 amino acids, has a 4,237 base pair mRNA and contains 6 exons total. [3] In addition, alternative splicing results in multiple transcript variants. [4] The ZNF337 gene encodes a zinc finger domain containing protein, however, this gene/protein is not yet well understood by the scientific community. The function of this gene has been proposed to participate in a processes such as the regulation of transcription (DNA-dependent), and proteins are expected to have molecular functions such as DNA binding, metal ion binding, zinc ion binding, which would be further localized in various subcellular locations. [5] [6] While there are no commonly associated or known aliases, an important paralog of this gene is ZNF875. [7]

Contents

Gene

There are no commonly associated or known aliases beyond Zinc Finger 337, however, some potential ones could include LOC26152. [8] Its locus is found on chromosome 20, positioned 11.21 (20p11.21). Base coordinates are on the negative (minus) strand. There are 6 exons in total. The span of the ZNF337 gene (the start of transcription to the polyA site in base-pairs) is 4,237 base pairs (mRNA).

Transcripts

The ZNF337 gene contains two transcript variants (both encode the same protein); variant 1 represents the longer transcript (751 aa) while variant 2 differs in the 5’ UTR. There are also three isoforms (X1, X2, and X3). These isoforms represent one of many splice variants of the gene (while the transcript is an expressed sequence).

Proteins

ZNF337 has a predicted molecular weight of about 86.9 kdal and a predicted isoelectric point of 9.74 pI. [9] It is important to note that these are predictions as post translational modifications could affect these values. As suggested by the protein's name, there are several zinc fingers. There are no high scoring hydrophobic or transmembrane segments/regions and has no positive or negative charge clusters. [10]

Some amino acids found in ZNF337 are seen in unusual amounts as shown below. In amino acid distribution, glutamine (E), methionine (M), and alanine (A) are low while cysteine (C ) and histidine (H) are high. It is rare for cysteine particularly to be highly expressed in amino acid sequences; the ZNF337 protein is an unusually basic protein. Because of its basic properties, it is DNA or RNA loving (i.e. able to bind to DNA or RNA fairly easily).

Domains and Motifs

As found through the MyHits program (found on ExPasy), there are about 6 different motifs (or pfams) present in ZNF337. [11]

Motif TypeAmino Acid Sequence Positione-value
KRAB (KRAB box)12-526.6e-26
PHD (PHD-finger)349-4120.0032
Rpr2 (RNAse P Rpr2/Rpr21/SNM1 domain)472-5510.00088
Zf-C2H2 (Zinc finger, C2H2 type)208-2304.3e-06
236-2583.8e-09
264-2866e-07
292-3142.4e-08
320-3424.6e-07
348-3701.9e-09
376-3982.8e-07
404-4265.9e-09
432-4541.2e-07
460-4821.8e-08
488-5103.1e-07
516-5383.8-07
544-5662.1e-06
572-5942.2e-06
600-6225e-07
628-6501.3e-08
656-6790.00014
685-7072.4e-07
713-7351.2e-07
Zf-C3HC4 (Zinc finger, C3HC4 type (RING finger))210-2690.00083
Zf-FCS (MYM-type zinc finger with FCS sequence motif)342-3850.02

Table 1.Six different motifs within the ZNF337 protein. The KRAB box, PHD finger, Rpr2, Zinc finger (C2H2 type), Zinc finger (C3HC4 type - RING finger), and Zinc finger (MYM-type zinc finger with FCS sequence motif) all play different functions and roles.

Secondary & Tertiary Structures

The secondary structure of ZNF337 is predicted to have many helices, sheets, turns and coils (especially random coils) as shown below. [12] [13]

Secondary Structure Composition
Type of Secondary StructureNumber of Amino AcidsPercent Composition
Alpha Helix 16922.50%
Extended Strand15420.51%
Random Coil 42856.99%

Both the H. Sapiens and P. troglodyte secondary structures are extremely similar; however, it is interesting to compare to S. dumerili where there is a stronger presence of sheets and coils between both 200-300 bp and 400-500 bp positions instead of sheets and helices. Additionally, comparing the beginning of the secondary structure (0-14 bp) of all species/orthologs shows that coils and turns make up the majority of the beginning, but not as much in some species such as S. dumerili (more helices and sheets instead).

P. troglodytes (95.6% identical to human protein) secondary structure P. troglodytes (95.6%25 identical to human protein) secondary structure.png
P. troglodytes (95.6% identical to human protein) secondary structure
S. dumerili (30.9% identical to human protein) secondary structure S. dumerili (30.9%25 identical to human protein) secondary structure.png
S. dumerili (30.9% identical to human protein) secondary structure
C. japonica (1.9% identical to human protein) secondary structure C. japonica (1.9%25 identical to human protein) secondary structure.png
C. japonica (1.9% identical to human protein) secondary structure


H. Sapiens ZNF337 secondary structure H. Sapiens secondary structure.png
H. Sapiens ZNF337 secondary structure

Several tertiary structure modeling programs were unable to construct a model for ZNF337. When using the SWISS-model program, some models were constructed, however, to ZNF568. The ZNF568 protein sequence is 45.20% identical to that of ZNF337, has a sequence similarity of 0.44, and coverage of 0.37 with a range between the 345-623 bp amino acids in the ZNF337 protein sequence. [14] The predicted tertiary structure is shown in Figure 1. In this figure, there are several zinc ion ligands.

Figure 1. Predicted tertiary structure of ZNF568, which is 45.20% identical to the ZNF337 protein sequence. Created using SWISS-MODEL. Predicted tertiary structure of ZNF568, which is 45.20%25 identical to the ZNF337 protein sequence. Created using SWISS-MODEL.png
Figure 1.Predictedtertiary structure of ZNF568, which is 45.20% identical to the ZNF337 protein sequence. Created using SWISS-MODEL.

ZNF568 is a protein coding gene, associated with diseases such as transient neonatal diabetes mellitus. It has transcriptional repression activity, partially through the recruitment of the co-repressor TRIM28, but also has repression activity independently of this interaction. It is specifically important during embryonic development, where it acts as a direct repressor of a placental-specific transcript of IGF2 in early development and regulates convergent extension movements required for axis elongation and tissue morphogenesis in all germ layers. It is also crucial for normal morphogenesis of extraembryonic tissues including the yolk sac, extraembryonic mesoderm and placenta. Interestingly, it may enhance proliferation or maintenance of neural stem cells [15]

Gene Level Regulation

Promoter

The promoter region was chosen using ElDorado at Genomatrix, which assessed the ZNF337 gene locus for possible promoter regions. Out of the six possible promoter regions and sets, promoter set 6 (GXP_8991829) was chosen as it is the one best supported by transcripts (has six transcript ID's). Its start position is 25696627, its end position is 25697904 and its length is 1278 base pairs. Within GXP_8991829 (-), coding transcript GXT_26235925 was chosen as it has 5 exons, 37,403 CAGE tags, and corresponds with accession number XM_006723558 in NCBI (see Figure 2).

The promoter sequence contains a CpG island with a CpG count of 138. There is also a DNAse cluster (score =1000) present within the promoter sequence.

Transcription Factor Binding Sites

Possible transcription factors for the ZNF337 promoter region were determined using ElDorado at Genomatrix. These are listed below in Table 2.

Transcription FactorDetailed Matrix InformationAnchor Base/PositionMatrix SimilaritySequence
TF2B Transcription factor II B (TFIIB) recognition element9841.0ccgCGCC
VTBPAvian C-type LTR TATA box  210.814ctatagtTAAGaacaat
Avian C-type LTR TATA box  7430.825ttttattTAGGtagccc
Lentivirus LTR TATA box3140.83gtgTATAatatgctgat
Cellular and viral TATA box elements1770.961ccctaTAAAtatgtaca
Cellular and viral TATA box elements2750.911aaataTAAAgtctacgt
CAAT Cellular and viral CCAAT box5530.909taaaCCATtgagaga
CAATNuclear factor Y (Y-box binding factor)1140.939taccCCAAtcaccct
CEBP CCAAT/enhancer binding protein (C/EBP), epsilon2890.974gtggtttgGCAAgcc

Table 2.Possible transcription factors for ZNF337 promoter region.

There are 340 factors from 129 cell types of Transcription Factor ChIP-seq Clusters (from Encode3). [16] With that said, only the strong ones (indicated as black or dark grey) that also contain peaks within the promoter or enhancer regions are shown in Table 3.

LocationTranscription Factor – ChIPCell Type(s)
Promoter CTCF GM12878 (human lymphoblastoid), H1-hESC (human embryonic stem cells), K562 (myelogenous leukemia cells)
Promoter RFX5 GM12878 (human lymphoblastoid)
Promoter STAT1 GM12878 (human lymphoblastoid)
Promoter TAF1 GM12878 (human lymphoblastoid)
Promoter TRIM22 GM12878 (human lymphoblastoid)
PromoterRESTH1-hESC (human embryonic stem cells)
Promoter GABPA HeLa-S3 (cervical cancer cell line)
Promoter MAFK HeLa-S3 (cervical cancer cell line)
Promoter TBP HeLa-S3 (cervical cancer cell line)
Promoter FOXA1 HepG2 (human liver cancer cell line)
Promoter SIN3A HepG2 (human liver cancer cell line)
Promoter SP1 HepG2 (human liver cancer cell line)
Promoter GATA2 K562 (myelogenous leukemia cells)
Promoter MYC K562 (myelogenous leukemia cells)
Promoter POLR2A Body of Pancreas
PromoterFOSEndothelial Cell of Umbilical Vein

Table 3.Transcription Factor-ChIP Clusters associated with specific cell types.

According to ORegAnno (literature curated TFBSs), there is no TF-ChIP signal overlap within the promoter/enhancer regions. Most of the ORegAnno citations correlate with a “NANP” gene, while transcription factors CTCF and CEBPA are confirmed in the enhancer region for the ZNF337 gene. [16]

Expression Patterns

Both RNA sequence data from the Gene database records at NCBI and the Human Protein Atlas [17] using immunohistochemical staining to determine protein in various tissues show that the ZNF337 protein is expressed in many tissues. While ZNF337 mRNA tissue specificity is expressed in low tissue specificity levels, the mRNA is notably expressed in the cerebellum (brain) but is also more highly expressed in all tissues (distribution in all) compared to protein expression, especially higher in female tissues.

An antibody was developed against a recombinant protein corresponding to amino acids: ESSQGQRENPTEIDKVLKGIENSRWGAFKCAERGQDFSRKMMVIIHKKAHSRQKLFTCRECHQGFRDESALLLHQN. The specificity of human ZNF337 antibody was verified on a Protein Array containing target protein plus 383 other non-specific proteins. This isotype is IgG, its clonality is polyclonal, its host is rabbit, and its purity is immunogen affinity purified. This staining of human cerebellum shows cytoplasmic positivity in Purkinje cells (which regulate and coordinate motor movements through inhibitory functions and neurotransmitters). [18]

While there is little-some expressivity in a wide range of tissues, together, these results indicate a trend that expressivity is highest and most present in the brain, particularly the cerebellum. A few experiments and results also indicate expressivity in female (and some male) reproductive tissues.

Transcript Level Regulation

Multiple sequence alignments were created to observe conservation between different species. Specifically, a multiple sequence alignment (MSA) of the ZNF337 promoter region in primates and marsupial (opossum, chimpanzee, human, and rhesus monkey), or closely related species, shows little to no conservation in the beginning of sequences.

There are highly conserved regions in the beginning of both the 5’ UTR and 3’ UTR multiple sequence alignments. These could be functionally important based on stem-loop formations, miRNA binding capacity, or RNA binding protein binding capacity.

Protein Level Regulation

Localization

The prediction for localization of ZNF337 is highest in the nucleus (nuclear) at 95.7% followed by 4.3% in the mitochondria (mitochondrial). [19]

Post-Translational Modifications

ZNF337 contains many predicted post-translational domains such as phosphorylation (serine and tyrosine kinases), [20] PEST motifs, [21] O-GlcNAc sites, [22] SUMOylation, [23] and glycation [24] as seen below:

ModificationAmino Acid Number (in sequence)
Phosphorylation 46, 109, 127, 155, 287, 446, 474, 483, 672, 695, 708, 743, 745, 751
PEST motif598-612
O-GlcNAc sites109, 142, 231, 384, 750, 751
SUMOylation 633
Glycation 94, 123, 125, 199, 206, 234, 248, 309, 339, 374, 388, 407, 430, 449, 486, 547, 556, 617, 668, 730

Table 4.Different post-translation modifications. Modifications can alter protein structure, thus affecting overall protein function and viability.

Predicted transmembrane domains, new signal peptides, N-terminal signal peptides, and cytoplasmic predictions

No predicted transmembrane domains were identified from tests run through SOSUI. [25] A prediction for a new signal peptide is very low and negative at -3.83. The GvH is also very negative at -8.69 (with a possible cleavage site between amino acids 56 and 57), indicating a low possibility that it has a cleavable signal sequence. Thus, ZNF337 is predicted to have no N-terminal signal peptide. Also, Reinhardt's method for cytoplasmic/nuclear discrimination has a cytoplasmic prediction for ZNF337 with a reliability score of 94.1. [19]

The nuclear localization signal is somewhat low at 0.75. Orthologs (P. troglodytes, S. dumerili, and C. asiatica ) were used to confirm the significance of these predictions. Likewise, there were no predictions of no N-terminal peptide signals and transmembrane domains. All these ZNF337 orthologous proteins confirmed the prediction of nuclear location at 95.7%.

Homology/Evolution

An important paralog of the ZNF337 gene is ZNF875. [7]

ZNF337 has many orthologs shown in a wide variety of species (vertebrates and invertebrates), such as primates, bony fishes, rodents, and even some plants as seen in Table 6 below. There are no orthologs found outside plants. Highly conserved amino acids and regions are shown in the middle-end of the ZNF337 protein sequence, suggesting that functions may differ due to less conservation in the beginning of ZNF337 sequences between species.

Phylogenetic trees highlight the evolution of species (specifically in relation to the evolution of the ZNF337 gene). Primates are clumped together closest to humans, while other species such as the megabat and mouse deviate from the cape golden mole or the zig zag eel and flier cichlid deviate from the greater amberjack. Species whose date of divergence from the human lineage (measured in units of millions of years ago) are greater show less sequence similarity and identity, which is also demonstrated through distance shown through phylogenetic trees.

Genus and SpeciesCommon NameTaxonomic GroupDate of Divergence from Human Lineage (Million Years Ago - MYA)Accession NumberSequence Length (aa)Sequence Identity to Human Protein (%)e-value
Homo sapiens Human Primates0NP_056470751 aa100%0
Gorilla gorilla gorilla Western gorilla Primates8.6XP_004061979.1751 aa99.5%0
Pongo pygmaeus Bornean orangutan Primates15.2XP_009231663.1753 aa98.3%0
Colobus angolensis palliates Angola colobusPrimates15.2XP_011807556.1758 aa96.7%0
Aotus nancymaae Nancy Ma's night monkeyPrimates42.9XP_012324051.1751 aa94.4%0
Pan troglodytes Chimpanzee Primates6.4XP_009435254.1751 aa95.6%0
Macaca mulatta Rhesus macaquePrimates28.81XP_028683917.1751 aa81.4%0
Macaca fascicularis Crab-eating macaquePrimates28.81XP_015313198.1751 aa81.2%0
Cebus capucinus imitator Panamanian white-faced capuchinPrimates42.9XP_017376089.1751 aa80.4%0
Pan paniscus Bonobo Primates6.4XP_014198483.1827 aa76.8%0
Tupaia chinensisChinese tree shrewScandentia85XP_006163813.1876 aa50.7%0
Carlito syrichta Philippine tarsierPrimates69XP_021573536.1807 aa52.5%0
Chrysochloris asiatica Cape golden moleAfrosoricida102XP_006877795.1764 aa45.0%0
Echinops telfairi Lesser hedgehog tenrecAfrosoricida102XP_030742187.11487 aa26.1%0
Seriola dumerili Greater amberjackCarangidae ("Bony fishes")433XP_022604330.1763 aa30.9%0
Oreochromis niloticus Nile tilapiaCichildae ("Bony fishes")433XP_019222635.11033 aa10.2%0
Archocentrus centrachusFlier cichlidCichildae ("Bony fishes")433XP_030603298.1794 aa28.6%0
Mastacembelus armatus Zig-zag eelSynbrachiformes433XP_026164592.1760 aa28.7%0
Pteropodidae MegabatChiroptera94751 aa35.4%0
Mus musculus MouseRodentia89751 aa26.5%3.00e-153
Ciona intestinalis Sea squirtEnterogona6031278 aa15.6%3.00e-96
Petromyzontiformes Sea lampreyLamprey599751 aa7.1%4.00e-35
Drosophila sechellia Fruit flyFly736751 aa6.9%4.00e-35
Pristionchus pacificus RoundwormRhabditida736751 aa2.9%6.00e-15
Caenorhabditis briggsae NematodeRhabditida736751 aa1.9%2.00e-08
Camellia japonica Japanese camelliaPlants1275751 aa1.9%2.00e-08

Table 5.Orthologs to ZNF337.

ZNF337 is evolving at the molecular level very quickly. When compared to fibrinogen protein rate of evolution, the ZNF337 appears to be accumulating the same amount amino acid changes in the same amount of time. It is evolving faster than cytochrome C protein, which is known to evolve slowly, as well as hemoglobin.

Divergence rate of ZNF337 compared to known fast diverging gene, fibrinogen, and slowly diverging gene, CytC. This graph shows the percent change in amino acid sequence over the date of divergence of the sequence from humans. ZNF337 evolution final.png
Divergence rate of ZNF337 compared to known fast diverging gene, fibrinogen, and slowly diverging gene, CytC. This graph shows the percent change in amino acid sequence over the date of divergence of the sequence from humans.

Function/Biochemistry

The ZNF337 gene encodes a zinc finger domain containing protein, however, this gene/protein is not yet well understood by the scientific community.

The function of this gene has been proposed to participate in a processes such as the regulation of transcription (DNA-dependent), and proteins are expected to have molecular functions such as DNA binding, metal ion binding, zinc ion binding, which would be further localized in various subcellular locations. [5] [6]

Because ZNF337 has several post-translational modification sites, alternative protein states may be present that permit ZNF337 to have different forms.

ZNF337 also has a variety of interactions with other proteins as discussed above, suggesting it may have a broad range of action. The different transcription factors demonstrate roles in transcription regulation. The KRAB box in the beginning of the sequence may play an important role in cell differentiation and development as well as regulating viral replication and transcription. [26] PHD fingers are found in nuclear proteins involved in epigenetics and chromatin-mediated transcriptional regulation. [27] Zinc finger C2H2 transcription factors are sequence-specific DNA binding proteins that regulate transcription. They possess DNA-binding domains that are formed from repeated Cys2His2 zinc finger motifs. [28] Also, many proteins containing a RING finger play a key role in the ubiquitination pathway.

Interacting proteins

Only the CEBPA transcription factor within the strongest DNAse HS cluster was also detected by GenoMatix. GenoMatix determined that potential transcription factors could include the following: TF2B, VTBP, CAAT, and CEBP. This is confirmed to be associated with the ZNF337 gene by the TF-ChIP ENCODE data and ORegAnno. The cluster score for this overlapping transcription factor, CEBPA, is 1000. [16] Transcription Factors that might bind to regulatory sequences, specifically the enhancer region, includes CEBPA (chr20:25670005-25670302) and CTCF (chr20:25670168-25670507).

Clinical significance

Diseases associated with the ZNF337 gene include the development of adult astrocytic tumors, [29] which is the most common glial (brain cell) tumor occurring within the brain and spinal cord. [30] This observation and association could make sense as there is a high expression of the ZNF337 gene in various parts of the brain (specifically the cerebellum).

There are several notable SNPs in the coding sequence of ZNF337. These mutations include mostly missense and nonsense mutations. [31] [32]

Related Research Articles

<span class="mw-page-title-main">YIF1A</span> Protein-coding gene in the species Homo sapiens

Protein YIF1A is a Yip1 domain family proteins that in humans is encoded by the YIF1A gene.

<span class="mw-page-title-main">C20orf27</span> Protein-coding gene in the species Homo sapiens

UPF0687 protein C20orf27 is a protein that in humans is encoded by the C20orf27 gene. It is expressed in the majority of the human tissues. One study on this protein revealed its role in regulating cell cycle, apoptosis, and tumorigenesis via promoting the activation of NFĸB pathway.

Transmembrane protein 251, also known as C14orf109 or UPF0694, is a protein that in humans is encoded by the TMEM251 gene. One notable feature of this protein is the presence of proline residues on one of its predicted transmembrane domains., which is a determinant of the intramitochondrial sorting of inner membrane proteins.

<span class="mw-page-title-main">Zinc finger protein 226</span> Protein found in humans

Zinc finger protein 226 is a protein that in humans is encoded by the ZNF226 gene.

<span class="mw-page-title-main">Zinc finger protein 684</span> Protein found in humans

Zinc finger protein 684 is a protein that in humans is encoded by the ZNF684 gene.

The coiled-coil domain containing 142 (CCDC142) is a gene which in humans encodes the CCDC142 protein. The CCDC142 gene is located on chromosome 2, spans 4339 base pairs and contains 9 exons. The gene codes for the coiled-coil domain containing protein 142 (CCDC142), whose function is not yet well understood. There are two known isoforms of CCDC142. CCDC142 proteins produced from these transcripts range in size from 743 to 665 amino acids and contain signals suggesting protein movement between the cytosol and nucleus. Homologous CCDC142 genes are found in many animals including vertebrates and invertebrates but not fungus, plants, protists, archea, or bacteria. Although the function of this protein is not well understood, it contains a coiled-coil domain and a RINT1_TIP1 motif located within the coiled-coil domain.

<span class="mw-page-title-main">C16orf86</span> Protein-coding gene in the species Homo sapiens

Uncharacterized protein C16orf86 is a protein in humans that is encoded by the C16orf86 gene. It is mostly made of alpha helices and it is expressed in the testes, but also in other tissues such as the kidney, colon, brain, fat, spleen, and liver. For the function of C16orf86, it is not well understood, however it could be a transcription factor in the nucleus that regulates G0/G1 in the cell cycle for tissues such as the kidney, brain, and skeletal muscles as mentioned in the DNA microarray data below in the gene level regulation section.

LOC101928193 is a protein which in humans is encoded by the LOC101928193 gene. There are no known aliases for this gene or protein. Similar copies of this gene, called orthologs, are known to exist in several different species across mammals, amphibians, fish, mollusks, cnidarians, fungi, and bacteria. The human LOC101928193 gene is located on the long (q) arm of chromosome 9 with a cytogenic location at 9q34.2. The molecular location of the gene is from base pair 133,189,767 to base pair 133,192,979 on chromosome 9 for an mRNA length of 3213 nucleotides. The gene and protein are not yet well understood by the scientific community, but there is data on its genetic makeup and expression. The LOC101928193 protein is targeted for the cytoplasm and has the highest level of expression in the thyroid, ovary, skin, and testes in humans.

<span class="mw-page-title-main">C5orf46</span> Protein-coding gene in the species Homo sapiens

C5orf46 is a protein coding gene located on chromosome 5 in humans. It is also known as sssp1, or skin and saliva secreted protein 1. There are two known isoforms known in humans, with isoform 2 being the longer of the two. The protein encoded is predicted to have one transmembrane domain, and has a predicted molecular weight of 9,692 Da, and a basal isoelectric point of 4.67.

<span class="mw-page-title-main">C16orf90</span> Protein-coding gene in the species Homo sapiens

C16orf90 or chromosome 16 open reading frame 90 produces uncharacterized protein C16orf90 in homo sapiens. C16orf90's protein has four predicted alpha-helix domains and is mildly expressed in the testes and lowly expressed throughout the body. While the function of C16orf90 is not yet well understood by the scientific community, it has suspected involvement in the biological stress response and apoptosis based on expression data from microarrays and post-translational modification data.

<span class="mw-page-title-main">C1orf94</span> Protein-coding gene in the species Homo sapiens

Chromosome 1 Opening Reading Frame 94 or C1orf94 is a protein in human coded by the C1orf94 gene. The function of this protein is still poorly understood.

<span class="mw-page-title-main">Fam89A</span> Human protein and gene

ProteinFAM89A is a protein which in humans is encoded by the FAM89A gene. It is also known as chromosome 1 open reading frame 153 (C1orf153). Highest FAM89A gene expression is observed in the placenta and adipose tissue. Though its function is largely unknown, FAM89A is found to be differentially expressed in response to interleukin exposure, and it is implicated in immune responses pathways and various pathologies such as atherosclerosis and glioma cell expression.

TMEM275 is a protein that in humans is encoded by the TMEM275 gene. TMEM275 has two, highly-conserved, helical trans-membrane regions. It is predicted to reside within the plasma membrane or the endoplasmic reticulum's membrane.

<span class="mw-page-title-main">ISLR</span> Protein-coding gene in the species Homo sapiens

In humans, the immunoglobulin super family containing leucine-rich repeat (ISLR) protein is encoded by the ISLR gene. Current RNA-seq studies show that the protein is highly expressed in the endometrium and ovary and shows expression among 25 other tissues. The protein is seen localized in the cytoplasm, plasma membrane, extracellular exosome, and platelet alpha granule lumen. Furthermore, the protein is known to play a role in platelet degranulation, cell adhesion, and response to elevated platelet cytosolic Ca2+.

RING Finger Protein 227, also known as RNF227 and LINC02581, is a protein which in humans is encoded by the RNF227 gene. According to DNA microarray data, it is found in at least 15 tissues.

<span class="mw-page-title-main">SMIM19</span> Protein-coding gene in the species Homo sapiens

SMIM19, also known as Small Integral Membrane Protein 19, encodes the SMIM19 protein. SMIM19 is a confirmed single-pass transmembrane protein passing from outside to inside, 5' to 3' respectively. SMIM19 has ubiquitously high to medium expression with among varied tissues or organs. The validated function of SMIM19 remains under review because of on sub-cellular localization uncertainty. However, all linked proteins research to interact with SMIM19 are associated with the endoplasmic reticulum (ER), presuming SMIM19 ER association

<span class="mw-page-title-main">FAM120AOS</span> Protein-coding gene in the species Homo sapiens

FAM120AOS, or family with sequence similarity 120A opposite strand, codes for uncharacterized protein FAM120AOS, which currently has no known function. The gene ontology describes the gene to be protein binding. Overall, it appears that the thyroid and the placenta are the two tissues with the highest expression levels of FAM120AOS across a majority of datasets.

<span class="mw-page-title-main">ZNF821</span> Zinc Finger 821

Zinc Finger Protein 821, also known as ZNF821, is a protein encoded by the ZNF821 gene. This gene is located on the 16th chromosome and is expressed highly in the testes, moderately expressed in the brain and low expression in 23 other tissues. The protein encoded is 412 amino acids long with 2 Zinc Finger motifs and a 23 amino acid long STPR domain.

<span class="mw-page-title-main">ZNF548</span> Protein-coding gene in the species Homo sapiens

Zinc Finger Protein 548 (ZNF548) is a human protein encoded by the ZNF548 gene which is located on chromosome 19. It is found in the nucleus and is hypothesized to play a role in the regulation of transcription by RNA Polymerase II. It belongs to the Krüppel C2H2-type zinc-finger protein family as it contains many zinc-finger repeats.

<span class="mw-page-title-main">ZNF839</span> Protein which in humans is encoded by the ZNF839 gene

ZNF839 or zinc finger protein 839 is a protein which in humans is encoded by the ZNF839 gene. It is located on the long arm of chromosome 14. Zinc finger protein 839 is speculated to play a role in humoral immune response to cancer as a renal carcinoma antigen (NY-REN-50). This is because NY-REN-50 was found to be over expressed in cancer patients, especially those with renal carcinoma. Zinc finger protein 839 also plays a role in transcription regulation by metal-ion binding since it binds to DNA via C2H2-type zinc finger repeats.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000130684 Ensembl, May 2017
  2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. "ZNF337 zinc finger protein 337 [Homo sapiens (human)] - Gene - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2020-04-29.
  4. "Homo sapiens zinc finger protein 337 (ZNF337), transcript variant 2, mRNA". 2019-08-22.{{cite journal}}: Cite journal requires |journal= (help)
  5. 1 2 Deloukas P, Matthews LH, Ashurst J, Burton J, Gilbert JG, Jones M, et al. (20–27 December 2001). "The DNA sequence and comparative analysis of human chromosome 20". Nature. 414 (6866): 865–71. Bibcode:2001Natur.414..865D. doi: 10.1038/414865a . PMID   11780052.
  6. 1 2 "AceView: Gene:ZNF337, a comprehensive annotation of human, mouse and worm genes with mRNAs or ESTsAceView". www.ncbi.nlm.nih.gov. Retrieved 2020-04-29.
  7. 1 2 "ZNF337 Gene - GeneCards | ZN337 Protein | ZN337 Antibody". www.genecards.org. Retrieved 2020-04-29.
  8. "ZNF337 Gene - GeneCards | ZN337 Protein | ZN337 Antibody". www.genecards.org. Retrieved 2020-05-02.
  9. "ExPASy - Compute pI/Mw tool". web.expasy.org. Retrieved 2020-05-02.
  10. "SAPS < Sequence Statistics < EMBL-EBI". www.ebi.ac.uk. Retrieved 2020-05-02.
  11. "Motif Scan". myhits.isb-sib.ch. Retrieved 2020-04-30.
  12. "CFSSP: Chou & Fasman Secondary Structure Prediction Server". www.biogem.org. Retrieved 2020-04-30.
  13. "(...)use HTTP POST method and not GET(...)". Archived from the original on 2022-04-20. Retrieved 2020-05-03.{{cite web}}: CS1 maint: bot: original URL status unknown (link)
  14. "SWISS-MODEL". swissmodel.expasy.org. Retrieved 2020-04-30.
  15. "ZNF568 Gene - GeneCards | ZN568 Protein | ZN568 Antibody". www.genecards.org. Retrieved 2020-04-30.
  16. 1 2 3 "Human hg38 chr20:25,618,436-25,683,311 UCSC Genome Browser v397". genome.ucsc.edu. Retrieved 2020-05-03.
  17. "The Human Protein Atlas". www.proteinatlas.org. Retrieved 2020-05-03.
  18. "ZNF337 Antibody". Novus Biologicals. Retrieved 2020-05-03.
  19. 1 2 "PSORT WWW Server". psort.hgc.jp. Retrieved 2020-05-03.
  20. "GPS 5.0 - Kinase-specific Phosphorylation Site Prediction". gps.biocuckoo.cn. Retrieved 2020-04-30.
  21. "EMBOSS: epestfind". emboss.bioinformatics.nl. Retrieved 2020-05-03.
  22. "YinOYang 1.2 Server". www.cbs.dtu.dk. Retrieved 2020-05-03.
  23. "SUMOplot™ Analysis Program | Abcepta". www.abcepta.com. Retrieved 2020-04-30.
  24. "NetGlycate 1.0 Server". www.cbs.dtu.dk. Retrieved 2020-04-30.
  25. "SOSUIsignal: Result". harrier.nagahama-i-bio.ac.jp. Retrieved 2020-04-30.
  26. "SMART: KRAB domain annotation". smart.embl.de. Retrieved 2020-05-03.
  27. "SMART: PHD domain annotation". smart.embl.de. Retrieved 2020-05-03.
  28. "Gene Group: C2H2 ZINC FINGER TRANSCRIPTION FACTORS". flybase.org. Retrieved 2020-05-03.
  29. "ZNF337 Gene - GeneCards | ZN337 Protein | ZN337 Antibody". www.genecards.org. Retrieved 2020-05-03.
  30. "Astrocytoma Tumors – Symptoms, Diagnosis and Treatments". www.aans.org. Retrieved 2020-05-03.
  31. "Home - SNP - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2020-05-03.
  32. "SNP linked to Gene (geneID:26152) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-05-03.

Suggested Readings