L-arabinose isomerase

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L-arabinose isomerase
4r1q.jpg
L-arabinose isomerase hexamer, Geobacillus kaustophilus
Identifiers
EC no. 5.3.1.4
CAS no. 9023-80-7
Databases
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BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
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PDB structures RCSB PDB PDBe PDBsum
Gene Ontology AmiGO / QuickGO
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NCBI proteins
Arabinose isomerase
PDB 2ajt EBI.jpg
crystal structure of l-arabinose isomerase from e.coli
Identifiers
SymbolArabinose_Isome
Pfam PF02610
InterPro IPR003762
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

In enzymology, a L-arabinose isomerase (EC 5.3.1.4) is an enzyme that catalyzes the chemical reaction

Contents

L-arabinose L-ribulose

Hence, this enzyme has one substrate, L-arabinose, and one product, L-ribulose.

This enzyme belongs to the family of isomerases, specifically those intramolecular oxidoreductases interconverting aldoses and ketoses. The systematic name of this enzyme class is L-arabinose aldose-ketose-isomerase. This enzyme participates in pentose and glucuronate interconversions.

This enzyme catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source. [1]

Structural studies

As of late 2007, two structures have been solved for this class of enzymes, with PDB accession codes 2AJT and 2HXG.

Related Research Articles

In biochemistry, isomerases are a general class of enzymes that convert a molecule from one isomer to another. Isomerases facilitate intramolecular rearrangements in which bonds are broken and formed. The general form of such a reaction is as follows:

A heptose is a monosaccharide with seven carbon atoms.

<span class="mw-page-title-main">Ribulose</span> Monosaccharide with five carbon atoms and a ketone functional group

Ribulose is a ketopentose — a monosaccharide containing five carbon atoms, and including a ketone functional group. It has chemical formula C5H10O5. Two enantiomers are possible, d-ribulose and l-ribulose. d-Ribulose is the diastereomer of d-xylulose.

<span class="mw-page-title-main">Phosphopentose epimerase</span>

Phosphopentose epimerase encoded by the RPE gene is a metalloprotein that catalyzes the interconversion between D-ribulose 5-phosphate and D-xylulose 5-phosphate.

In enzymology, a L-arabinitol 2-dehydrogenase (EC 1.1.1.13) is an enzyme that catalyzes the chemical reaction

In enzymology, a 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, an arabinose-5-phosphate isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, an arabinose isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, a D-lyxose ketol-isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, a glucuronate isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, a hydroxypyruvate isomerase is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">L-fucose isomerase</span>

In enzymology, a L-fucose isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, a L-rhamnose isomerase is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">L-ribulose-5-phosphate 4-epimerase</span>

In enzymology, a L-ribulose-5-phosphate 4-epimerase is an enzyme that catalyzes the interconversion of ribulose 5-phosphate and xylulose 5-phosphate in the oxidative phase of the Pentose phosphate pathway.

<span class="mw-page-title-main">Phosphoribosylanthranilate isomerase</span> Enzyme involved in tryptophan synthesis

In enzymology, a phosphoribosylanthranilate isomerase (PRAI) is an enzyme that catalyzes the third step of the synthesis of the amino acid tryptophan.

<span class="mw-page-title-main">Ribose-5-phosphate isomerase</span>

Ribose-5-phosphate isomerase (Rpi) encoded by the RPIA gene is an enzyme that catalyzes the conversion between ribose-5-phosphate (R5P) and ribulose-5-phosphate (Ru5P). It is a member of a larger class of isomerases which catalyze the interconversion of chemical isomers. It plays a vital role in biochemical metabolism in both the pentose phosphate pathway and the Calvin cycle. The systematic name of this enzyme class is D-ribose-5-phosphate aldose-ketose-isomerase.

In enzymology, a ribose isomerase is an enzyme that catalyzes the chemical reaction

In enzymology, a S-methyl-5-thioribose-1-phosphate isomerase is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">Ribulokinase</span>

In enzymology, a ribulokinase is an enzyme that catalyzes the chemical reaction

<span class="mw-page-title-main">Xylose isomerase</span> Class of enzymes

In enzymology, a xylose isomerase is an enzyme that catalyzes the interconversion of D-xylose and D-xylulose. This enzyme belongs to the family of isomerases, specifically those intramolecular oxidoreductases interconverting aldoses and ketoses. The isomerase has now been observed in nearly a hundred species of bacteria. Xylose-isomerases are also commonly called fructose-isomerases due to their ability to interconvert glucose and fructose. The systematic name of this enzyme class is D-xylose aldose-ketose-isomerase. Other names in common use include D-xylose isomerase, D-xylose ketoisomerase, and D-xylose ketol-isomerase.

References

  1. Sa-Nogueira I, Nogueira TV, Soares S, de Lencastre H (March 1997). "The Bacillus subtilis L-arabinose (ara) operon: nucleotide sequence, genetic organization and expression". Microbiology. 143 (3): 957–69. doi: 10.1099/00221287-143-3-957 . PMID   9084180.

Further reading

This article incorporates text from the public domain Pfam and InterPro: IPR003762