NPHP1

Last updated

NPHP1
Protein NPHP1 PDB 1s1n.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases NPHP1 , JBTS4, NPH1, SLSN1, nephrocystin 1
External IDs OMIM: 607100; MGI: 1858233; HomoloGene: 229; GeneCards: NPHP1; OMA:NPHP1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001291012
NM_001291013
NM_016902
NM_001355429
NM_001369236

Contents

RefSeq (protein)

NP_001277941
NP_001277942
NP_058598
NP_001342358
NP_001356165

Location (UCSC) Chr 2: 110.12 – 110.21 Mb Chr 2: 127.58 – 127.63 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Nephrocystin-1 is a protein that in humans is encoded by the NPHP1 gene. [5]

Function

This gene encodes a protein with src homology domain 3 (SH3) patterns. Mutations in this gene cause familial juvenile nephronophthisis. [5]

Interactions

NPHP1 has been shown to interact with BCAR1, [6] [7] PTK2B, [7] Filamin [8] and INVS. [9]

Related Research Articles

<span class="mw-page-title-main">Nephronophthisis</span> Medical condition

Nephronophthisis is a genetic disorder of the kidneys which affects children. It is classified as a medullary cystic kidney disease. The disorder is inherited in an autosomal recessive fashion and, although rare, is the most common genetic cause of childhood kidney failure. It is a form of ciliopathy. Its incidence has been estimated to be 0.9 cases per million people in the United States, and 1 in 50,000 births in Canada.

<span class="mw-page-title-main">Senior–Løken syndrome</span> Congenital eye disorder

Senior–Løken syndrome is a congenital eye disorder, first characterized in 1961. It is a rare, ciliopathic, autosomal recessive disorder characterized by juvenile nephronophthis and progressive eye disease.

<span class="mw-page-title-main">PTK2B</span> Protein-coding gene in humans

Protein tyrosine kinase 2 beta is an enzyme that in humans is encoded by the PTK2B gene.

<span class="mw-page-title-main">NPHS2</span> Protein-coding gene in the species Homo sapiens

Podocin is a protein that in humans is encoded by the NPHS2 gene.

<span class="mw-page-title-main">FLNC (gene)</span> Protein-coding gene in the species Homo sapiens

Filamin-C (FLN-C) also known as actin-binding-like protein (ABPL) or filamin-2 (FLN2) is a protein that in humans is encoded by the FLNC gene. Filamin-C is mainly expressed in cardiac and skeletal muscles, and functions at Z-discs and in subsarcolemmal regions.

<span class="mw-page-title-main">CEP290</span> Protein-coding gene in the species Homo sapiens

Centrosomal protein of 290 kDa is a protein that in humans is encoded by the CEP290 gene. CEP290 is located on the Q arm of chromosome 12.

<span class="mw-page-title-main">INVS</span> Protein-coding gene in the species Homo sapiens

Inversin is a protein that in humans is encoded by the INVS gene.

<span class="mw-page-title-main">NPHP4</span> Protein-coding gene in the species Homo sapiens

Nephrocystin-4 is a protein that in humans is encoded by the NPHP4 gene.

<span class="mw-page-title-main">MALL</span> Protein-coding gene in the species Homo sapiens

MAL-like protein is a protein that in humans is encoded by the MALL gene.

<span class="mw-page-title-main">IQCB1</span> Protein-coding gene in the species Homo sapiens

IQ calmodulin-binding motif-containing protein 1 is a protein that in humans is encoded by the IQCB1 gene.

<span class="mw-page-title-main">NPHP3</span> Protein-coding gene in the species Homo sapiens

Nephrocystin-3 is a protein that in humans is encoded by the NPHP3 gene.

<span class="mw-page-title-main">TNS1</span> Protein-coding gene in the species Homo sapiens

Tensin-1 is a protein that in humans is encoded by the TNS1 gene.

Conorenal syndrome is a collection of medical conditions that seem to have a common genetic cause.

<span class="mw-page-title-main">TMEM67</span> Protein-coding gene in the species Homo sapiens

Meckelin is a protein that in humans is encoded by the TMEM67 gene.

<span class="mw-page-title-main">Renal–hepatic–pancreatic dysplasia</span> Medical condition

Renal–hepatic–pancreatic dysplasia is an autosomal recessive congenital disorder characterized by pancreatic fibrosis, renal dysplasia and hepatic dysgenesis. An association with NPHP3 has been described. It was characterized in 1959.

RPGRIP1L is a human gene.

GLIS family zinc finger 2 also known as GLIS2 is a human gene.

Xaa-Pro aminopeptidase 3, also known as aminopeptidase P3, is an enzyme that in humans is encoded by the XPNPEP3 gene. XPNPEP3 localizes to mitochondria in renal cells and to kidney tubules in a cell type-specific pattern. Mutations in XPNPEP3 gene have been identified as a cause of a nephronophthisis-like disease.

<span class="mw-page-title-main">NEK8</span> Protein-coding gene in the species Homo sapiens

Serine/threonine-protein kinase Nek8, also known as never in mitosis A-related kinase 8, is an enzyme that in humans is encoded by the NEK8 gene.

<span class="mw-page-title-main">Tetratricopeptide repeat domain 21b</span> Protein-coding human gene

Tetratricopeptide repeat domain 21B is a protein that in humans is encoded by the TTC21B gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000144061 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000027378 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. 1 2 "Entrez Gene: NPHP1 nephronophthisis 1 (juvenile)".
  6. Donaldson JC, Dempsey PJ, Reddy S, Bouton AH, Coffey RJ, Hanks SK (Apr 2000). "Crk-associated substrate p130(Cas) interacts with nephrocystin and both proteins localize to cell-cell contacts of polarized epithelial cells". Experimental Cell Research. 256 (1): 168–78. doi:10.1006/excr.2000.4822. PMID   10739664.
  7. 1 2 Benzing T, Gerke P, Höpker K, Hildebrandt F, Kim E, Walz G (Aug 2001). "Nephrocystin interacts with Pyk2, p130(Cas), and tensin and triggers phosphorylation of Pyk2". Proceedings of the National Academy of Sciences of the United States of America. 98 (17): 9784–9. Bibcode:2001PNAS...98.9784B. doi: 10.1073/pnas.171269898 . PMC   55530 . PMID   11493697.
  8. Donaldson JC, Dise RS, Ritchie MD, Hanks SK (Aug 2002). "Nephrocystin-conserved domains involved in targeting to epithelial cell-cell junctions, interaction with filamins, and establishing cell polarity". The Journal of Biological Chemistry. 277 (32): 29028–35. doi: 10.1074/jbc.M111697200 . PMID   12006559.
  9. Otto EA, Schermer B, Obara T, O'Toole JF, Hiller KS, Mueller AM, Ruf RG, Hoefele J, Beekmann F, Landau D, Foreman JW, Goodship JA, Strachan T, Kispert A, Wolf MT, Gagnadoux MF, Nivet H, Antignac C, Walz G, Drummond IA, Benzing T, Hildebrandt F (Aug 2003). "Mutations in INVS encoding inversin cause nephronophthisis type 2, linking renal cystic disease to the function of primary cilia and left-right axis determination". Nature Genetics. 34 (4): 413–20. doi:10.1038/ng1217. PMC   3732175 . PMID   12872123.

Further reading