OFD1

OFD1
Identifiers
Aliases	OFD1 , 71-7A, CXorf5, JBTS10, RP23, SGBS2, oral-facial-digital syndrome 1, centriole and centriolar satellite protein, OFD1 centriole and centriolar satellite protein
External IDs	OMIM: 300170 MGI: 1350328 HomoloGene: 2677 GeneCards: OFD1
Gene location (Human) Chr. X chromosome (human) [1] Band Xp22.2 Start 13,734,743 bp [1] End 13,777,955 bp [1]
Gene location (Mouse) Chr. X chromosome (mouse) [2] Band X F5|X 77.28 cM Start 165,173,029 bp [2] End 165,223,700 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in sperm bronchial epithelial cell right uterine tube optic nerve parotid gland endometrium left lobe of thyroid gland right lobe of thyroid gland body of pancreas anterior pituitary Top expressed in secondary oocyte fossa saccule motor neuron condyle substantia nigra Paneth cell trigeminal ganglion otic placode conjunctival fornix More reference expression data BioGPS More reference expression data
Gene ontology Molecular function alpha-tubulin binding protein binding identical protein binding gamma-tubulin binding Cellular component cytoplasm ciliary basal body cytosol centrosome cell projection membrane cilium centriolar satellite microtubule organizing center centriole cytoskeleton nucleus extracellular region Biological process epithelial cilium movement involved in determination of left/right asymmetry mitotic spindle assembly cell projection organization G2/M transition of mitotic cell cycle centriole replication cilium assembly ciliary basal body-plasma membrane docking mitotic cell cycle regulation of G2/M transition of mitotic cell cycle Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 8481 237222 Ensembl ENSG00000046651 ENSMUSG00000040586 UniProt O75665 Q80Z25 RefSeq (mRNA) NM_003611 NM_001330209 NM_001330210 NM_177429 RefSeq (protein) NP_001317138 NP_001317139 NP_003602 NP_803178 Location (UCSC) Chr X: 13.73 – 13.78 Mb Chr X: 165.17 – 165.22 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Oral-facial-digital syndrome 1 protein is a protein that in humans is encoded by the OFD1 gene. ^{[5] [6] [7]}

Human chromosomal region Xp22.3-p21.3 comprises the area between the pseudoautosomal boundary and the Duchenne muscular dystrophy gene (MIM 300377). This region harbors several disease loci, including OFD1 (MIM 311200), CFNS (MIM 304110), DFN6 (MIM 300066), and SEDT (MIM 313400). It also contains a region of homology with both the short and the long arms of the Y chromosome and undergoes frequent chromosomal rearrangements.[supplied by OMIM] ^[7]

See also

• Orofaciodigital syndrome 1
• Simpson–Golabi–Behmel syndrome

References

1. GRCh38: Ensembl release 89: ENSG00000046651 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000040586 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. de Conciliis L, Marchitiello A, Wapenaar MC, Borsani G, Giglio S, Mariani M, Consalez GG, Zuffardi O, Franco B, Ballabio A, Banfi S (Nov 1998). "Characterization of Cxorf5 (71-7A), a novel human cDNA mapping to Xp22 and encoding a protein containing coiled-coil alpha-helical domains". Genomics. 51 (2): 243–50. doi:10.1006/geno.1998.5348. PMID   9722947.
6. Feather SA, Woolf AS, Donnai D, Malcolm S, Winter RM (Aug 1997). "The oral-facial-digital syndrome type 1 (OFD1), a cause of polycystic kidney disease and associated malformations, maps to Xp22.2-Xp22.3". Hum Mol Genet. 6 (7): 1163–7. doi: 10.1093/hmg/6.7.1163 . PMID   9215688.
7. "Entrez Gene: OFD1 oral-facial-digital syndrome 1".

External links

• GeneReviews/NCBI/NIH/UW entry on Oral-Facial-Digital Syndrome Type I

Further reading

• Alitalo T, Francis F, Kere J, et al. (1995). "A 6-Mb YAC contig in Xp22.1-p22.2 spanning the DXS69E, XE59, GLRA2, PIGA, GRPR, CALB3, and PHKA2 genes". Genomics. 25 (3): 691–700. doi:10.1016/0888-7543(95)80012-B. PMID   7759104.
• Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID   8125298.
• Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID   9373149.
• Brzustowicz LM, Farrell S, Khan MB, Weksberg R (1999). "Mapping of a new SGBS locus to chromosome Xp22 in a family with a severe form of Simpson-Golabi-Behmel syndrome". Am. J. Hum. Genet. 65 (3): 779–83. doi:10.1086/302527. PMC   1377986 . PMID   10441586.
• Ferrante MI, Giorgio G, Feather SA, et al. (2001). "Identification of the gene for oral-facial-digital type I syndrome". Am. J. Hum. Genet. 68 (3): 569–76. doi:10.1086/318802. PMC   1274470 . PMID   11179005.
• Emes RD, Ponting CP (2002). "A new sequence motif linking lissencephaly, Treacher Collins and oral-facial-digital type 1 syndromes, microtubule dynamics and cell migration". Hum. Mol. Genet. 10 (24): 2813–20. doi: 10.1093/hmg/10.24.2813 . PMID   11734546.
• Rakkolainen A, Ala-Mello S, Kristo P, et al. (2002). "Four novel mutations in the OFD1 (Cxorf5) gene in Finnish patients with oral-facial-digital syndrome 1". J. Med. Genet. 39 (4): 292–6. doi:10.1136/jmg.39.4.292. PMC   1735103 . PMID   11950863.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Romio L, Wright V, Price K, et al. (2003). "OFD1, the gene mutated in oral-facial-digital syndrome type 1, is expressed in the metanephros and in human embryonic renal mesenchymal cells". J. Am. Soc. Nephrol. 14 (3): 680–9. doi: 10.1097/01.ASN.0000054497.48394.D2 . PMID   12595504.
• Ferrante MI, Barra A, Truong JP, et al. (2004). "Characterization of the OFD1/Ofd1 genes on the human and mouse sex chromosomes and exclusion of Ofd1 for the Xpl mouse mutant". Genomics. 81 (6): 560–9. doi:10.1016/S0888-7543(03)00091-0. PMID   12782125.
• Andersen JS, Wilkinson CJ, Mayor T, et al. (2003). "Proteomic characterization of the human centrosome by protein correlation profiling". Nature. 426 (6966): 570–4. Bibcode:2003Natur.426..570A. doi:10.1038/nature02166. PMID   14654843. S2CID   4427303.
• Romio L, Fry AM, Winyard PJ, et al. (2005). "OFD1 is a centrosomal/basal body protein expressed during mesenchymal-epithelial transition in human nephrogenesis". J. Am. Soc. Nephrol. 15 (10): 2556–68. doi: 10.1097/01.ASN.0000140220.46477.5C . PMID   15466260.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Thauvin-Robinet C, Cossée M, Cormier-Daire V, et al. (2006). "Clinical, molecular, and genotype-phenotype correlation studies from 25 cases of oral-facial-digital syndrome type 1: a French and Belgian collaborative study". J. Med. Genet. 43 (1): 54–61. doi:10.1136/jmg.2004.027672. PMC   2564504 . PMID   16397067.
• Budny B, Chen W, Omran H, et al. (2007). "A novel X-linked recessive mental retardation syndrome comprising macrocephaly and ciliary dysfunction is allelic to oral-facial-digital type I syndrome". Hum. Genet. 120 (2): 171–8. doi:10.1007/s00439-006-0210-5. PMID   16783569. S2CID   20471001.