Peter Karp (scientist)

Peter Karp
Born	Peter D. Karp
Alma mater	University of Pennsylvania (BA) [1] Stanford University (PhD)
Known for	BioCyc database collection [2] MetaCyc [3] EcoCyc [4]
Awards	ISCB Fellow (2012) [5]
Scientific career
Fields	Bioinformatics Artificial Intelligence [6]
Institutions	SRI International National Center for Biotechnology Information [1]
Thesis	Hypothesis Formation and Qualitative Reasoning in Molecular Biology  (1988)
Academic advisors	Bruce Buchanan [7] Edward Feigenbaum [7] Peter Friedland [7] Charles Yanofsky [7]
Website	sri.com/about/people/peter-karp

Peter D. Karp is director of the Bioinformatics Research Group at SRI International in Menlo Park, California. ^{[1] [6]} Karp leads the development of the BioCyc database collection (which includes the highly curated EcoCyc and MetaCyc databases). BioCyc databases combine genome, metabolic pathway, and regulatory information for thousands of organisms.

Education

Karp received his undergraduate degree from the University of Pennsylvania. He received a Ph.D. degree in computer science from Stanford University. His dissertation developed qualitative reasoning and machine learning techniques for hypothesis generation in molecular biology. Karp was a postdoctoral fellow at the National Library of Medicine.

Honors and recognition

He was elected a fellow of the International Society for Computational Biology (ISCB) in 2012 for outstanding contributions to the fields of computational biology and bioinformatics. ^[5] He is also a Fellow of the American Association for the Advancement of Science.

References

1. "Biographical Sketch for Peter D. Karp, Ph.D." www.ai.sri.com.
2. Karp, Peter D.; et al. (2005). "Expansion of the BioCyc collection of pathway/genome databases to 160 genomes". Nucleic Acids Research. 33 (19): 6083–6089. doi:10.1093/nar/gki892. ISSN   0305-1048. PMC   1266070 . PMID   16246909.
3. Caspi, R.; Foerster, H.; Fulcher, C. A.; Kaipa, P.; Krummenacker, M.; Latendresse, M.; Paley, S.; Rhee, S. Y.; Shearer, A. G.; Tissier, C.; Walk, T. C.; Zhang, P.; Karp, P. D. (2007). "The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases". Nucleic Acids Research . 36 (Database): D623 –D631. doi:10.1093/nar/gkm900. ISSN   0305-1048. PMC   2238876 . PMID   17965431.
4. Keseler, I. M.; et al. (2004). "EcoCyc: a comprehensive database resource for Escherichia coli". Nucleic Acids Research . 33 (Database issue): D334 –D337. doi:10.1093/nar/gki108. ISSN   1362-4962. PMC   540062 . PMID   15608210.
5. Anon (2018). "ISCB Fellows". iscb.org. International Society for Computational Biology. Archived from the original on 2017-03-20.
6. Peter Karp publications indexed by Google Scholar
7. Karp, Peter Dornin (1988). Hypothesis Formation and Qualitative Reasoning in Molecular Biology. dtic.mil (PhD thesis). Stanford University. doi:10.1609/aimag.v11i4.859. OCLC   20463112. Archived from the original on June 9, 2017.