Marie-France Sagot | |
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Alma mater | University of São Paulo (BSc) Paris Diderot University (MAS) University of Paris-Est Marne-la-Vallée (PhD) |
Awards | ISCB Fellow (2019) |
Scientific career | |
Fields | Algorithms Computational biology [1] |
Institutions | French Institute for Research in Computer Science and Automation (INRIA) Claude Bernard University Lyon 1 King's College London |
Thesis | Ressemblance lexicale et structurale entre macromolécules : formalisation et approches combinatoires (1996) |
Doctoral advisor | Maxime Crochemore [2] |
Website | lbbe |
Marie-France Sagot is a researcher at the French Institute for Research in Computer Science and Automation (INRIA) and responsible for the INRIA European team ERABLE. She is also a member of staff at Claude Bernard University Lyon 1. [2] [3] [4]
With a PhD and an Habilitation in Computer Science from the University of Marne-la-Vallée in France, she has recognized work on algorithms for computational biology [1] and gene prediction [5] and biological sequence analysis. [6] She has coordinated more than 4 national and 20 international projects since 1998, including the Inria Associated Team Compasso and the OLISSIPO project [7] with Susana Vinga from INESC-ID/IST in Lisbon, Portugal. She has been involved in teaching and teaching organisation, including creating and directing the PhD Program on Computational Biology at the Instituto Gulbenkian de Ciência, Lisbon, Portugal, from 2004 to 2007.
She was elected a Fellow of the International Society for Computational Biology (ISCB) in 2019 for "outstanding contributions to the fields of computational biology and bioinformatics". [8] Since 2002 she has been a visiting research fellow at King's College London. [4] Her main research interests concern computational biology, algorithm analysis and design, and combinatorics.
Michael Spencer Waterman is a Professor of Biology, Mathematics and Computer Science at the University of Southern California (USC), where he holds an Endowed Associates Chair in Biological Sciences, Mathematics and Computer Science. He previously held positions at Los Alamos National Laboratory and Idaho State University.
David Haussler is an American bioinformatician known for his work leading the team that assembled the first human genome sequence in the race to complete the Human Genome Project and subsequently for comparative genome analysis that deepens understanding the molecular function and evolution of the genome.
Webb Colby Miller is an American bioinformatician who is professor in the Department of Biology and the Department of Computer Science and Engineering at The Pennsylvania State University.
Søren Brunak is a Danish biological and physical scientist working in bioinformatics, systems biology, and medical informatics. He is a professor of Disease Systems Biology at the University of Copenhagen and professor of bioinformatics at the Technical University of Denmark. As Research Director at the Novo Nordisk Foundation Center for Protein Research at the University of Copenhagen Medical School, he leads a research effort where molecular-level systems biology data are combined with phenotypic data from the healthcare sector, such as electronic patient records, registry information, and biobank questionnaires. A major aim is to understand the network biology basis for time-ordered comorbidities and discriminate between treatment-related disease correlations and other comorbidities in disease trajectories. Søren Brunak also holds a position as a Medical Informatics Officer at Rigshospitalet, the Capital Region of Denmark.
Mark Borodovsky is a Regents' Professor at the Join Wallace H. Coulter Department of Biomedical Engineering of Georgia Institute of Technology and Emory University and Director of the Center for Bioinformatics and Computational Genomics at Georgia Tech. He has also been a Chair of the Department of Bioinformatics at the Moscow Institute of Physics and Technology in Moscow, Russia from 2012 to 2022.
Olga G. Troyanskaya is a Professor in the Department of Computer Science and the Lewis-Sigler Institute for Integrative Genomics at Princeton University and the Deputy Director for Genomics at the Flatiron Institute's Center for Computational Biology in NYC. She studies protein function and interactions in biological pathways by analyzing genomic data using computational tools.
Christopher Boyce Burge is Professor of Biology and Biological Engineering at Massachusetts Institute of Technology.
Pavel Arkadevich Pevzner is the Ronald R. Taylor Professor of Computer Science and director of the NIH Center for Computational Mass Spectrometry at University of California, San Diego. He serves on the editorial board of PLoS Computational Biology and he is a member of the Genome Institute of Singapore scientific advisory board.
Ron Shamir is an Israeli professor of computer science known for his work in graph theory and in computational biology. He holds the Raymond and Beverly Sackler Chair in Bioinformatics, and is the founder and former head of the Edmond J. Safra Center for Bioinformatics at Tel Aviv University.
Gary Stormo is an American geneticist and currently Joseph Erlanger Professor in the Department of Genetics and the Center for Genome Sciences and Systems Biology at Washington University School of Medicine in St Louis. He is considered one of the pioneers of bioinformatics and genomics. His research combines experimental and computational approaches in order to identify and predict regulatory sequences in DNA and RNA, and their contributions to the regulatory networks that control gene expression.
Bonnie Anne Berger is an American mathematician and computer scientist, who works as the Simons professor of mathematics and professor of electrical engineering and computer science at the Massachusetts Institute of Technology. Her research interests are in algorithms, bioinformatics and computational molecular biology.
Shoshana Wodak is a computational biologist and an organizational leader in the field of protein-protein docking. Wodak was one of the first people to dock proteins together using a computer program.
Thomas Lengauer is a German computer scientist and computational biologist.
Daniel Mier Gusfield is an American computer scientist, Distinguished Professor of Computer Science at the University of California, Davis. Gusfield is known for his research in combinatorial optimization and computational biology.
Mona Singh is a Professor of Computer Science in the Lewis-Sigler Institute for Integrative Genomics at Princeton University.
Hanah Margalit is a Professor in the faculty of medicine at the Hebrew University of Jerusalem. Her research combines bioinformatics, computational biology and systems biology, specifically in the fields of gene regulation in bacteria and eukaryotes.
Xiaole Shirley Liu (刘小乐) is computational biologist, cancer researcher, and entrepreneur. She has been a Professor in the Department of Data Sciences at the Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health. She is now the co-founder and CEO of GV20 Therapeutics.
Zhiping Weng is the Li Weibo Professor of biomedical research and chair of the program in integrative biology and bioinformatics at the University of Massachusetts Medical School. She was awarded Fellowship of the International Society for Computational Biology (ISCB) in 2020 for outstanding contributions to computational biology and bioinformatics.
Teresa Maria Przytycka is a Polish-American computational biologist who works as a senior investigator in the Computational Biology Branch of the National Center for Biotechnology Information (NCBI), where she heads the Algorithmic Methods in Computational and Systems Biology (AlgoCSB) section. She started her research career in parallel algorithms; at the NCBI, her research takes a computational approach to problems in systems biology involving cancer, gene regulation, and the analysis of massive data.
Mikhail Sergeyevich Gelfand is a Russian Bioinformaticist and molecular biologist. He is a member of Academia Europaea, Vice President Biomedical Research of Skolkovo Institute of Science and Technology, one of the founder of Dissernet plagiarism fighting society and a political activist, former member of Russian Opposition Coordination Council. He is a grandson of a prominent Soviet mathematician Israel Gelfand.