Collagen, type V, alpha 1

COL5A1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1A89, 1A9A
Identifiers
Aliases	COL5A1 , EDSC, collagen type V alpha 1, collagen type V alpha 1 chain, EDSCL1, FMDMF
External IDs	OMIM: 120215 MGI: 88457 HomoloGene: 55434 GeneCards: COL5A1
Gene location (Human) Chr. Chromosome 9 (human) [1] Band 9q34.3 Start 134,641,803 bp [1] End 134,844,843 bp [1]
Gene location (Mouse) Chr. Chromosome 2 (mouse) [2] Band 2 A3|2 19.38 cM Start 27,776,437 bp [2] End 27,929,526 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in stromal cell of endometrium periodontal fiber canal of the cervix tibia sural nerve myometrium left uterine tube gastric mucosa right coronary artery gallbladder Top expressed in belly cord calvaria internal carotid artery external carotid artery vas deferens body of femur ascending aorta dermis fossa aortic valve More reference expression data BioGPS More reference expression data
Gene ontology Molecular function extracellular matrix structural constituent metal ion binding integrin binding platelet-derived growth factor binding proteoglycan binding heparin binding protein binding extracellular matrix structural constituent conferring tensile strength Cellular component collagen endoplasmic reticulum lumen collagen type V trimer basement membrane extracellular exosome extracellular matrix extracellular space extracellular region collagen-containing extracellular matrix Biological process eye morphogenesis negative regulation of endodermal cell differentiation tendon development wound healing, spreading of epidermal cells integrin biosynthetic process heart morphogenesis regulation of cellular component organization extracellular matrix organization cell adhesion blood vessel development collagen biosynthetic process collagen catabolic process cell migration skin development collagen fibril organization supramolecular fiber organization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1289 12831 Ensembl ENSG00000130635 ENSMUSG00000026837 UniProt P20908 O88207 RefSeq (mRNA) NM_000093 NM_001278074 NM_015734 RefSeq (protein) NP_000084 NP_001265003 NP_056549 Location (UCSC) Chr 9: 134.64 – 134.84 Mb Chr 2: 27.78 – 27.93 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Collagen alpha-1(V) chain is a protein that in humans is encoded by the COL5A1 gene. ^{[5] [6]}

This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appears to regulate the assembly of heterotypic fibers composed of both type I and type V collagen. This gene product is closely related to type XI collagen and it is possible that the collagen chains of types V and XI constitute a single collagen type with tissue-specific chain combinations. Mutations in this gene are associated with Ehlers-Danlos syndrome, types I and II. ^[6]

See also

• Type-V collagen

References

1. GRCh38: Ensembl release 89: ENSG00000130635 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000026837 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Greenspan DS, Byers MG, Eddy RL, Cheng W, Jani-Sait S, Shows TB (May 1992). "Human collagen gene COL5A1 maps to the q34.2----q34.3 region of chromosome 9, near the locus for nail-patella syndrome". Genomics. 12 (4): 836–7. doi:10.1016/0888-7543(92)90320-R. PMID   1572660.
6. "Entrez Gene: COL5A1 collagen, type V, alpha 1".

Further reading

• Mann K (1992). "Isolation of the alpha 3-chain of human type V collagen and characterization by partial sequencing". Biol. Chem. Hoppe-Seyler. 373 (2): 69–75. doi:10.1515/bchm3.1992.373.1.69. PMID   1571108.
• Greenspan DS, Cheng W, Hoffman GG (1992). "The pro-alpha 1(V) collagen chain. Complete primary structure, distribution of expression, and comparison with the pro-alpha 1(XI) collagen chain". J. Biol. Chem. 266 (36): 24727–33. doi: 10.1016/S0021-9258(18)54290-3 . PMID   1722213.
• Takahara K, Sato Y, Okazawa K, et al. (1991). "Complete primary structure of human collagen alpha 1 (V) chain". J. Biol. Chem. 266 (20): 13124–9. doi: 10.1016/S0021-9258(18)98813-7 . PMID   2071595.
• Yaoi Y, Hashimoto K, Koitabashi H, et al. (1990). "Primary structure of the heparin-binding site of type V collagen". Biochim. Biophys. Acta. 1035 (2): 139–45. doi:10.1016/0304-4165(90)90108-9. PMID   2203476.
• Seyer JM, Kang AH (1989). "Covalent structure of collagen: amino acid sequence of three cyanogen bromide-derived peptides from human alpha 1(V) collagen chain". Arch. Biochem. Biophys. 271 (1): 120–9. doi:10.1016/0003-9861(89)90262-2. PMID   2496661.
• Niyibizi C, Fietzek PP, van der Rest M (1984). "Human placenta type V collagens. Evidence for the existence of an alpha 1(V) alpha 2(V) alpha 3(V) collagen molecule". J. Biol. Chem. 259 (22): 14170–4. doi: 10.1016/S0021-9258(18)89872-6 . PMID   6501291.
• Mumby SM, Raugi GJ, Bornstein P (1984). "Interactions of thrombospondin with extracellular matrix proteins: selective binding to type V collagen". J. Cell Biol. 98 (2): 646–52. doi:10.1083/jcb.98.2.646. PMC   2113082 . PMID   6693501.
• Rhodes RK, Miller EJ (1982). "Evidence for the existence of an alpha 1(V) alpha 2(V) alpha 3(V) collagen molecule in human placental tissue". Coll. Relat. Res. 1 (4): 337–43. doi:10.1016/s0174-173x(81)80010-6. PMID   7346227.
• Lee S, Greenspan DS (1995). "Transcriptional promoter of the human alpha 1(V) collagen gene (COL5A1)". Biochem. J. 310 (1): 15–22. doi:10.1042/bj3100015. PMC   1135848 . PMID   7646438.
• Moradi-Améli M, Rousseau JC, Kleman JP, et al. (1994). "Diversity in the processing events at the N-terminus of type-V collagen". Eur. J. Biochem. 221 (3): 987–95. doi: 10.1111/j.1432-1033.1994.tb18815.x . PMID   8181482.
• Takahara K, Hoffman GG, Greenspan DS (1996). "Complete structural organization of the human alpha 1 (V) collagen gene (COL5A1): divergence from the conserved organization of other characterized fibrillar collagen genes". Genomics. 29 (3): 588–97. doi:10.1006/geno.1995.9961. PMID   8575750.
• De Paepe A, Nuytinck L, Hausser I, et al. (1997). "Mutations in the COL5A1 gene are causal in the Ehlers-Danlos syndromes I and II". Am. J. Hum. Genet. 60 (3): 547–54. PMC   1712501 . PMID   9042913.
• Tillet E, Ruggiero F, Nishiyama A, Stallcup WB (1997). "The membrane-spanning proteoglycan NG2 binds to collagens V and VI through the central nonglobular domain of its core protein". J. Biol. Chem. 272 (16): 10769–76. doi: 10.1074/jbc.272.16.10769 . PMID   9099729.
• Sasaki T, Brakebusch C, Engel J, Timpl R (1998). "Mac-2 binding protein is a cell-adhesive protein of the extracellular matrix which self-assembles into ring-like structures and binds beta1 integrins, collagens and fibronectin". EMBO J. 17 (6): 1606–13. doi:10.1093/emboj/17.6.1606. PMC   1170508 . PMID   9501082.
• Wu YL, Sumiyoshi H, Khaleduzzaman M, et al. (1998). "cDNA sequence and expression of the mouse alpha1(V) collagen gene (Col5a1)". Biochim. Biophys. Acta. 1397 (3): 275–84. doi:10.1016/S0167-4781(98)00016-5. PMID   9582436.
• Burrows NP, Nicholls AC, Richards AJ, et al. (1998). "A point mutation in an intronic branch site results in aberrant splicing of COL5A1 and in Ehlers-Danlos syndrome type II in two British families". Am. J. Hum. Genet. 63 (2): 390–8. doi:10.1086/301948. PMC   1377290 . PMID   9683580.
• Aho S, Uitto J (1999). "Two-hybrid analysis reveals multiple direct interactions for thrombospondin 1". Matrix Biol. 17 (6): 401–12. doi:10.1016/S0945-053X(98)90100-7. PMID   9840442.
• Giunta C, Steinmann B (2000). "Compound heterozygosity for a disease-causing G1489E [correction of G1489D] and disease-modifying G530S substitution in COL5A1 of a patient with the classical type of Ehlers-Danlos syndrome: an explanation of intrafamilial variability?". Am. J. Med. Genet. 90 (1): 72–9. doi:10.1002/(SICI)1096-8628(20000103)90:1<72::AID-AJMG13>3.0.CO;2-C. PMID   10602121.
• Imamura Y, Scott IC, Greenspan DS (2000). "The pro-alpha3(V) collagen chain. Complete primary structure, expression domains in adult and developing tissues, and comparison to the structures and expression domains of the other types V and XI procollagen chains". J. Biol. Chem. 275 (12): 8749–59. doi: 10.1074/jbc.275.12.8749 . PMID   10722718.

External links

• Ehlers-Danlos Syndrome, Classic Type. Includes: Ehlers-Danlos Syndrome Type I, Ehlers-Danlos Syndrome Type II