High-definition fiber tracking

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High-definition fiber tracking of arcuate fasciculus High-definition fiber tracking.tif
High-definition fiber tracking of arcuate fasciculus

High definition fiber tracking (HDFT) [1] is a tractography technique where data from MRI scanners is processed through computer algorithms to reveal the detailed wiring of the brain and to pinpoint fiber tracts. Each tract contains millions of neuronal connections. HDFT is based on data acquired from diffusion spectrum imaging [2] and processed by generalized q-sampling imaging. [3] [4] The technique makes it possible to virtually dissect 40 major fiber tracts in the brain. [1] The HDFT scan is consistent with brain anatomy unlike diffusion tensor imaging (DTI). [5] Thus, the use of HDFT is essential in pinpointing damaged neural connections. [6]

Contents

History

Traditional DTI uses six diffusivity characteristics to model how water molecules diffuse in brain tissues and makes axonal fiber tracking possible. [5] However, DTI had a major limitation in resolving axons from different tracts intersected and crossed en route to their target. In 2009, Learning Research & Development Center (LRDC) at University of Pittsburgh launched the 2009 Pittsburgh Brain Competition [7] to invite the best research team to work on this problem. [8] A prize of $10,000 was offered to the team that could track optic radiations, and teams from 168 countries took part in the competition. A winning team from Taiwan revealed Meyer's loop, which no other team had successfully tracked. The key of the method was multiple observations of water molecules and improved algorithms to better capture how axons connects brain regions. [8] The technique was further developed as HDFT between the University of Pittsburgh and Carnegie Mellon University. [1] [9]

HDFT is currently used by UPMC neurosurgery department to provide neurosurgical planning, neuro-structural damage assessment, intraoperative navigation, and evaluation of changes and responses to rehabilitation therapy after brain surgery. [10]

Applications

HDFT has been applied to traumatic brain injury (TBI) to identify which brain connections have been broken and which are still intact. [11] [12] [13] HDFT allows neurosurgeons to localize fiber breaks caused by traumatic brain injuries to provide better diagnoses and prognoses. It could also provide an objective way of identifying brain injury, predicting outcome and planning rehabilitation. [14] HDFT can also be used to determine the optimal surgical approach for difficult-to-reach tumors and vascular malformations. [15]

See also

Related Research Articles

<span class="mw-page-title-main">Claustrum</span> Structure in the brain

The claustrum is a thin sheet of neurons and supporting glial cells, that connects to the cerebral cortex and subcortical regions including the amygdala, hippocampus and thalamus of the brain. It is located between the insular cortex laterally and the putamen medially, encased by the extreme and external capsules respectively. Blood to the claustrum is supplied by the middle cerebral artery. It is considered to be the most densely connected structure in the brain, and thus hypothesized to allow for the integration of various cortical inputs such as vision, sound and touch, into one experience. Other hypotheses suggest that the claustrum plays a role in salience processing, to direct attention towards the most behaviorally relevant stimuli amongst the background noise. The claustrum is difficult to study given the limited number of individuals with claustral lesions and the poor resolution of neuroimaging.

<span class="mw-page-title-main">Tractography</span> 3D visualization of nerve tracts via diffusion MRI

In neuroscience, tractography is a 3D modeling technique used to visually represent nerve tracts using data collected by diffusion MRI. It uses special techniques of magnetic resonance imaging (MRI) and computer-based diffusion MRI. The results are presented in two- and three-dimensional images called tractograms.

<span class="mw-page-title-main">Longitudinal fissure</span> Deep groove separating the two cerebral hemispheres of the vertebrate brain

The longitudinal fissure is the deep groove that separates the two cerebral hemispheres of the vertebrate brain. Lying within it is a continuation of the dura mater called the falx cerebri. The inner surfaces of the two hemispheres are convoluted by gyri and sulci just as is the outer surface of the brain.

<span class="mw-page-title-main">Arcuate fasciculus</span> Neural pathway connecting Brocas area and Wernickes area

In neuroanatomy, the arcuate fasciculus is a bundle of axons that generally connects Broca's area and Wernicke's area in the brain. It is an association fiber tract connecting caudal temporal lobe and inferior frontal lobe.

<span class="mw-page-title-main">Minimally conscious state</span> Disorder of Consciousness where overt signs of awareness are preserved

A minimally conscious state or MCS is a disorder of consciousness distinct from persistent vegetative state and locked-in syndrome. Unlike persistent vegetative state, patients with MCS have partial preservation of conscious awareness. MCS is a relatively new category of disorders of consciousness. The natural history and longer term outcome of MCS have not yet been thoroughly studied. The prevalence of MCS was estimated to be 9 times of PVS cases, or between 112,000 and 280,000 in the US by year 2000.

<span class="mw-page-title-main">Diffusion-weighted magnetic resonance imaging</span> Method of utilizing water in magnetic resonance imaging

Diffusion-weighted magnetic resonance imaging is the use of specific MRI sequences as well as software that generates images from the resulting data that uses the diffusion of water molecules to generate contrast in MR images. It allows the mapping of the diffusion process of molecules, mainly water, in biological tissues, in vivo and non-invasively. Molecular diffusion in tissues is not random, but reflects interactions with many obstacles, such as macromolecules, fibers, and membranes. Water molecule diffusion patterns can therefore reveal microscopic details about tissue architecture, either normal or in a diseased state. A special kind of DWI, diffusion tensor imaging (DTI), has been used extensively to map white matter tractography in the brain.

<span class="mw-page-title-main">Commissural fiber</span> Axons that connect the two hemispheres of the brain

The commissural fibers or transverse fibers are axons that connect the two hemispheres of the brain. Huge numbers of commissural fibers make up the commissural tracts in the brain, the largest of which is the corpus callosum.

<span class="mw-page-title-main">Occipitofrontal fasciculus</span>

The occipitofrontal fasciculus, also known as the fronto-occipital fasciculus, passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua.

<span class="mw-page-title-main">Uncinate fasciculus</span> White matter tract in the human brain

The uncinate fasciculus is a white matter association tract in the human brain that connects parts of the limbic system such as the temporal pole, anterior parahippocampus, and amygdala in the temporal lobe with inferior portions of the frontal lobe such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is one of the last white matter tracts to mature in the human brain.

<span class="mw-page-title-main">Superior longitudinal fasciculus</span> Association fiber tract of the brain

The superior longitudinal fasciculus (SLF) is an association tract in the brain that is composed of three separate components. It is present in both hemispheres and can be found lateral to the centrum semiovale and connects the frontal, occipital, parietal, and temporal lobes. This bundle of tracts (fasciculus) passes from the frontal lobe through the operculum to the posterior end of the lateral sulcus where they either radiate to and synapse on neurons in the occipital lobe, or turn downward and forward around the putamen and then radiate to and synapse on neurons in anterior portions of the temporal lobe.

<span class="mw-page-title-main">Inferior longitudinal fasciculus</span>

The inferior longitudinal fasciculus (ILF) is traditionally considered one of the major occipitotemporal association tracts. It is the white matter backbone of the ventral visual stream. It connects the ventral surface of the anterior temporal lobe and the extrastriate cortex of the occipital lobe, running along the lateral and inferior wall of the lateral ventricle.

<span class="mw-page-title-main">Connectome</span> Comprehensive map of neural connections in the brain

A connectome is a comprehensive map of neural connections in the brain, and may be thought of as its "wiring diagram". An organism's nervous system is made up of neurons which communicate through synapses. A connectome is constructed by tracing the neuron in a nervous system and mapping where neurons are connected through synapses.

<span class="mw-page-title-main">3D Slicer</span> Image analysis and scientific visualization software

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<span class="mw-page-title-main">Magnetic resonance neurography</span>

Magnetic resonance neurography (MRN) is the direct imaging of nerves in the body by optimizing selectivity for unique MRI water properties of nerves. It is a modification of magnetic resonance imaging. This technique yields a detailed image of a nerve from the resonance signal that arises from in the nerve itself rather than from surrounding tissues or from fat in the nerve lining. Because of the intraneural source of the image signal, the image provides a medically useful set of information about the internal state of the nerve such as the presence of irritation, nerve swelling (edema), compression, pinch or injury. Standard magnetic resonance images can show the outline of some nerves in portions of their courses but do not show the intrinsic signal from nerve water. Magnetic resonance neurography is used to evaluate major nerve compressions such as those affecting the sciatic nerve (e.g. piriformis syndrome), the brachial plexus nerves (e.g. thoracic outlet syndrome), the pudendal nerve, or virtually any named nerve in the body. A related technique for imaging neural tracts in the brain and spinal cord is called magnetic resonance tractography or diffusion tensor imaging.

Connectomics is the production and study of connectomes: comprehensive maps of connections within an organism's nervous system. More generally, it can be thought of as the study of neuronal wiring diagrams with a focus on how structural connectivity, individual synapses, cellular morphology, and cellular ultrastructure contribute to the make up of a network. The nervous system is a network made of billions of connections and these connections are responsible for our thoughts, emotions, actions, memories, function and dysfunction. Therefore, the study of connectomics aims to advance our understanding of mental health and cognition by understanding how cells in the nervous system are connected and communicate. Because these structures are extremely complex, methods within this field use a high-throughput application of functional and structural neural imaging, most commonly magnetic resonance imaging (MRI), electron microscopy, and histological techniques in order to increase the speed, efficiency, and resolution of these nervous system maps. To date, tens of large scale datasets have been collected spanning the nervous system including the various areas of cortex, cerebellum, the retina, the peripheral nervous system and neuromuscular junctions.

<span class="mw-page-title-main">Magnetic resonance imaging of the brain</span>

Magnetic resonance imaging of the brain uses magnetic resonance imaging (MRI) to produce high-quality two- or three-dimensional images of the brain, brainstem, and cerebellum without ionizing radiation (X-rays) or radioactive tracers.

Connectograms are graphical representations of connectomics, the field of study dedicated to mapping and interpreting all of the white matter fiber connections in the human brain. These circular graphs based on diffusion MRI data utilize graph theory to demonstrate the white matter connections and cortical characteristics for single structures, single subjects, or populations.

<span class="mw-page-title-main">MRI pulse sequence</span> A pulse sequence during a medical test

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Denis Le Bihan is a medical doctor, physicist, member of the Institut de France, member of the French Academy of Technologies and director since 2007 of NeuroSpin, an institution of the Atomic Energy and Alternative Energy Commission (CEA) in Saclay, dedicated to the study of the brain by magnetic resonance imaging (MRI) with a very high magnetic field. Denis Le Bihan has received international recognition for his outstanding work, introducing new imaging methods, particularly for the study of the human brain, as evidenced by the many international awards he has received, such as the Gold Medal of the International Society of Magnetic Resonance in Medicine (2001), the coveted Lounsbery Prize, the Louis D. Prize from the Institut de France, the prestigious Honda Prize (2012), the Louis-Jeantet Prize (2014), the Rhein Foundation Award (2021). His work has focused on the introduction, development and application of highly innovative methods, notably diffusion MRI.

David Lozoff Brody is an American neurologist, academic, and author most known for his research on the clinical treatment of traumatic brain injury (TBI) and neurodegenerative diseases in civilian and military personnel. He is a Clinical Neurologist at the Walter Reed National Military Medical Center and a professor of Neurology at Uniformed Services University of the Health Sciences, as well as a professor of Neurology and Biomedical Engineering at Washington University.

References

  1. 1 2 3 Fernandez-Miranda, Juan C.; Pathak, Sudhir; Engh, Johnathan; Jarbo, Kevin; Verstynen, Timothy; Yeh, Fang-Cheng; Wang, Yibao; Mintz, Arlan; Boada, Fernando (August 2012). "High-definition fiber tractography of the human brain: neuroanatomical validation and neurosurgical applications". Neurosurgery. 71 (2): 430–453. doi:10.1227/NEU.0b013e3182592faa. ISSN   1524-4040. PMID   22513841.
  2. Wedeen, V. J.; Wang, R. P.; Schmahmann, J. D.; Benner, T.; Tseng, W. Y. I.; Dai, G.; Pandya, D. N.; Hagmann, P.; D'Arceuil, H. (2008-07-15). "Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers". NeuroImage. 41 (4): 1267–1277. doi:10.1016/j.neuroimage.2008.03.036. ISSN   1053-8119. PMID   18495497. S2CID   2660208.
  3. Yeh, Fang-Cheng; Wedeen, Van Jay; Tseng, Wen-Yih Isaac (September 2010). "Generalized q-sampling imaging". IEEE Transactions on Medical Imaging. 29 (9): 1626–1635. doi:10.1109/TMI.2010.2045126. ISSN   1558-254X. PMID   20304721.
  4. "Diffusion MRI Reconstruction in DSI Studio - DSI Studio". dsi-studio.labsolver.org. Retrieved 2019-04-22.
  5. 1 2 Alexander, Andrew L.; Lee, Jee Eun; Lazar, Mariana; Field, Aaron S. (July 2007). "Diffusion Tensor Imaging of the Brain". Neurotherapeutics. 4 (3): 316–329. doi:10.1016/j.nurt.2007.05.011. ISSN   1933-7213. PMC   2041910 . PMID   17599699.
  6. "High Definition Fiber Tracking ' the nerve blog | Blog Archive | Boston University". Boston University. 2012-10-10. Retrieved 2013-11-10.
  7. PBAIC2009 (2009-02-05), Old 2009 Pittsburgh Brain Connectivity Competition Overview , retrieved 2018-01-31{{citation}}: CS1 maint: numeric names: authors list (link)
  8. 1 2 "Seeing the Brain's Broken Cables | DiscoverMagazine.com". Discover Magazine. Retrieved 2017-11-25.
  9. "DSI Studio". dsi-studio.labsolver.org. Retrieved 2019-04-22.
  10. "High Definition Fiber Tracking | UPMC | Pittsburgh, PA". UPMC | Life Changing Medicine. Retrieved 2019-04-24.
  11. Shin, Samuel S.; Pathak, Sudhir; Presson, Nora; Bird, William; Wagener, Lauren; Schneider, Walter; Okonkwo, David O.; Fernandez-Miranda, Juan C. (2014). Detection of white matter injury in concussion using high-definition fiber tractography. Vol. 28. pp. 86–93. doi:10.1159/000358767. ISBN   978-3-318-02648-1. ISSN   1662-3924. PMID   24923395.{{cite book}}: |journal= ignored (help)
  12. Shin, Samuel S.; Verstynen, Timothy; Pathak, Sudhir; Jarbo, Kevin; Hricik, Allison J.; Maserati, Megan; Beers, Sue R.; Puccio, Ava M.; Boada, Fernando E. (May 2012). "High-definition fiber tracking for assessment of neurological deficit in a case of traumatic brain injury: finding, visualizing, and interpreting small sites of damage". Journal of Neurosurgery. 116 (5): 1062–1069. doi:10.3171/2012.1.JNS111282. ISSN   1933-0693. PMID   22381003.
  13. "University Times ' Research Notes". University of Pittsburgh. 2012-03-22. Retrieved 2013-11-10.
  14. "High Definition Fiber Tracking | UPMC | Pittsburgh, PA". www.upmc.com. Retrieved 2018-01-31.
  15. Faraji, Amir H.; Abhinav, Kumar; Jarbo, Kevin; Yeh, Fang-Cheng; Shin, Samuel S.; Pathak, Sudhir; Hirsch, Barry E.; Schneider, Walter; Fernandez-Miranda, Juan C. (November 2015). "Longitudinal evaluation of corticospinal tract in patients with resected brainstem cavernous malformations using high-definition fiber tractography and diffusion connectometry analysis: preliminary experience". Journal of Neurosurgery. 123 (5): 1133–1144. doi: 10.3171/2014.12.JNS142169 . ISSN   1933-0693. PMID   26047420.