List of sequenced algae genomes

Last updated

This list of sequenced algal genomes contains algal species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle-only sequences. For plant genomes see the list of sequenced plant genomes. For plastid sequences, see the list of sequenced plastomes. For all kingdoms, see the list of sequenced genomes.

Contents

Dinoflagellates (Alveolata)

See also List of sequenced protist genomes.

Organism

strain

TypeRelevanceGenome sizeNumber

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Breviolum minutum ( Symbiodinium minutum; clade B1) Dinoflagellate Coral symbiont1.5 Gb47,014 Okinawa Institute of Science and Technology 2013 [1] DraftOIST Marine Genomics [2]
Cladocopium goreaui ( Symbiodinium goreaui; clade C, type C1) Dinoflagellate Coral symbiont1.19 Gb35,913Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018 [3] DraftReFuGe 2020 [4]
Cladocopium C92 strain Y103 ( Symbiodinium sp. clade C; putative type C92) Dinoflagellate Foraminiferan symbiontUnknown (assembly size 0.70 Gb)65,832 Okinawa Institute of Science and Technology 2018 [5] DraftOIST Marine Genomics [2]
Fugacium kawagutii CS156=CCMP2468 ( Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont?1.07 Gb26,609Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018 [3] DraftReFuGe 2020 [4]
Fugacium kawagutii CCMP2468 ( Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont?1.18 Gb36,850 University of Connecticut / Xiamen University 2015 [6] DraftS. kawagutii genome project [7]
Polarella glacialis CCMP1383 Dinoflagellate Psychrophile, Antarctic3.02 Gb (diploid), 1.48 Gbp (haploid)58,232 University of Queensland 2020 [8] DraftUQ eSpace [9]
Polarella glacialis CCMP2088 Dinoflagellate Psychrophile, Arctic2.65 Gb (diploid), 1.30 Gbp (haploid)51,713 University of Queensland 2020 [8] DraftUQ eSpace [9]
Symbiodinium microadriaticum (clade A) Dinoflagellate Coral symbiont1.1 Gb49,109 King Abdullah University of Science and Technology 2016 [10] DraftReef Genomics [11]
Symbiodinium A3 strain Y106 ( Symbiodinium sp. clade A3) Dinoflagellate symbiontUnknown (assembly size 0.77 Gb)69,018 Okinawa Institute of Science and Technology 2018 [5] DraftOIST Marine Genomics [2]

Cryptomonad

Organism

strain

TypeRelevanceGenome sizeNumber

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Cryptophyceae sp. CCMP2293Nanoflagellate Nucleomorph, Psychrophile 534.5 Mb33,051 Joint Genome Institute 2016 [12] JGI Genome Portal [13]
Guillardia theta Eukaryote Endosymbiosis 87.2 Mb24, 840 Dalhousie University 2012 [14] The Greenhouse [15]

Glaucophyte

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Cyanophora

paradoxa

Model

Organism

70.2 Mb3,900 Rutgers University 2012 [16] Draft v1The Greenhouse [15]

Cyanophora Genome Project [17]

Cyanophora

paradoxa

Model

Organism

99.94 Mb25,831 Rutgers University 2019 [18] Draft v2Cyanophora Genome Project [19]

Green algae

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Asterochloris sp. Cgr/DA1pho Photobiont 55.8 Mb10,025 Duke University 2011 [20] JGI Genome Portal [13]
Auxenochlorella protothecoides Biofuels22.9 Mb7,039 Tsinghua University 2014 [21] The Greenhouse [15]
Bathycoccus prasinos Comparative analysis15.1 Mb7,900 Joint Genome Institute 2012 [22] JGI Genome Portal [13]
Chlamydomonas reinhardtii CC-503

cw92 mt+

Model Organism111.1 Mb17,741 Joint Genome Institute 2017 [23] Phytozome [24]

The Greenhouse [15]

Chlorella sorokiniana str. 1228Biofuels61.4 Mb Los Alamos National Lab 2018 [25] The Greenhouse [15]
Chlorella sorokiniana UTEX 1230Biofuels58.5 Mb Los Alamos National Lab 2018 [26] The Greenhouse [15]
Chlorella sorokiniana DOE1412Biofuels57.8 Mb Los Alamos National Lab 2018 [27] The Greenhouse [15]
Chlorella variabilis NC64ABiofuels46.2 Mb9,7912010 [28] The Greenhouse [15]
Chlorella vulgaris Biofuels37.3 Mb National Renewable

Energy Laboratory

2015 [29] The Greenhouse [15]
Coccomyxa subellipsoidea

sp. C-169

Biofuels48.8 Mb9839 Joint Genome Institute 2012 [30] Phytozome [24]

The Greenhouse [15]

Dunaliella salina

CCAP19/18

 Halophile

Biofuels

Beta-carotene and glycerol production

343.7 Mb16,697 Joint Genome Institute 2017 [31] Phytozome [24]
Eudorina sp.Multicellular alga,

model organism

~180 Mb University of Tokyo 2018 [32]
Gonium pectorale 148.81 Mb Kansas State University 2016 [33]
Micromonas commoda NOUM17 (RCC288)Marine phytoplankton 21.0 Mb10,262 Monterey Bay Aquarium Research Institute 2013 [34] [35] JGI Genome Portal [13]
Micromonas

pusilla CCMP-1545

Marine

phytoplankton

21.9 Mb10,575Micromonas

Genome

Consortium

2009 [36] Phytozome [24]

The Greenhouse [15]

Micromonas

pusilla

RCC299/NOUM17

Marine

phytoplankton

20.9 Mb10,056 Joint Genome

Institute

2009 [36] Phytozome [24]

The

Greenhouse [15]

Monoraphidium

neglectum

Biofuels69.7 Mb16,755 Bielefeld

University

2013 [37] The

Greenhouse [15]

Ostreococcus

lucimarinus

CCE9901

Small genome13.2 Mb7,603 Joint Genome Institute 2007 [38] Phytozome [24]
Ostreococcus

tauri OTH95

Small genome12.9 Mb7,699 CNRS 2014 [39] The Greenhouse [15]
Ostreococcus sp.

RCC809

Small genome13.3 Mb7,492 Joint Genome

Institute

2009 [40] JGI [41]
Picochlorum

soloecismus

DOE101

Biofuels15.2 Mb7,844 Los Alamos

National Lab

2017 [42] The Greenhouse [15]
Picochlorum

SENEW3

Biofuels13.5 Mb7,367 Rutgers University 2014 [43] The Greenhouse [15]
Scenedesmus

obliquus DOE0152Z

Biofuels210.3 Mb Brooklyn College 2017 [44] The Greenhouse [15]
Symbiochloris reticulata (Metagenome) Photobiont 58.6 Mb12,720 Joint Genome Institute 2018 [45] JGI Genome Portal [13]
Tetraselmis sp. Biofuels228 Mb Los Alamos

National Lab

2018 [15] The Greenhouse [15]
Pedinomonas minor (Chlorophyta)55 Mb New Phytologist 2022 [46]
Volvox carteri Multicellular alga,

model organism

131.2 Mb14,247 Joint Genome

Institute

2010 [47] Phytozome [24]

The

Greenhouse [15]

Yamagishiella unicoccaMulticellular alga,

model organism

~140 Mb University of Tokyo 2018 [32]

Haptophyte

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Chrysochromulina

parva

Biofuels65.8 Mb Los Alamos National Laboratory 2018 [48] The Greenhouse [15]
Chrysochromulina tobinii CCMP291Model organism, Biofuels59.1 Mb16,765 University of Washington 2015 [49] The Greenhouse [15]
Emiliania huxleyi Coccolithophore Alkenone production, Algal blooms167.7 Mb38,554 Joint Genome Institute 2013 [50] The Greenhouse [15]
Pavlovales sp. CCMP2436 Psychrophile 165.4 Mb26,034 Joint Genome Institute 2016 [51] JGI Genome Portal [13]

Heterokonts/Stramenopiles

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Aureococcus

anophagefferens

Harmful Algal

Bloom

50.1 Mb11,522 Joint Genome Institute 2011 [52] The Greenhouse [15]
Ectocarpus siliculosus Brown algaeModel organism198.5 Mb16,269 Genoscope 2012 [53] The Greenhouse [15]
Fragilariopsis cylindrus CCMP1102 Psychrophile 61.1 Mb21,066 University of East Anglia, Joint Genome Institute 2017 [54] JGI Genome Portal [13]
Nannochloropsis

gaditana

Biofuels28.5 Mb10,486 University of Padua 2014 [55] The Greenhouse [15]
Nannochloropsis

oceanica

Biofuels31.5 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology2016 [56] The Greenhouse [15]
Nannochloropsis Salina CCMP1766Biofuels24.4 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology2016 [57] The Greenhouse [15]
Ochromonadaceae sp. CCMP2298 Psychrophile 61.1 Mb20,195 Joint Genome Institute 2016 [58] JGI Genome Portal [13]
Pelagophyceae sp. CCMP2097 Psychrophile 85.2 Mb19,402 Joint Genome Institute 2016 [59] JGI Genome Portal [13]
Phaeodactylum tricornutum Model organism27.5 Mb10,408 Diatom Consortium 2008 [60] The Greenhouse [15]
Pseudo-nitzschia multiseries CLN-47218.7 Mb19,703 Joint Genome Institute 2011 [61] JGI Genome Portal [13]
Saccharina japonica Brown algaeCommercial crop543.4 Mb Chinese Academy of Sciences, Beijing Institutes of Life Science2015 [62] The Greenhouse [15]
Thalassiosira oceanica CCMP 1005Model organism92.2 Mb34,642 The Future Ocean 2012 [63] The Greenhouse [15]
Thalassiosira pseudonana model organism32.4 Mb11,673 Diatom Consortium 2009 [64] The Greenhouse [15]

Red algae (Rhodophyte)

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Chondrus crispus Carrageenan production, model organism105 Mb9,606 Genoscope 2013The Greenhouse [15]
Cyanidioschyzon

merolae 10D

Model

organism

16.5 Mb4,775 National Institute

of Genetics, Japan

2007 [65] The Greenhouse [15]
Galdieria sulphuraria Extremophile 12.1 Mb The University of York 2016 [66] The Greenhouse [15]
Gracilariopsis chorda Mesophile 92.1 Mb10,806 Sungkyunkwan University 2018 [67]
Porphyridium purpureum Mesophile 19.7 Mb8,355 Rutgers University 2013 [68]
Porphyra umbilicalis Mariculture 87.6 Mb13,360 University of Maine 2017 [69] Phytozome [24]
Pyropia yezoensis Mariculture 43.5 Mb10,327 National Research Institute of Fisheries Science 2013 [70]

Rhizaria

Organism

strain

TypeRelevanceGenome

size

Number

of genes

predicted

OrganizationYear of

completion

Assembly

status

Links
Bigelowiella natans Model organism94. Mb21,708 Dalhousie University 2012 [14] The Greenhouse [15]

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References

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  19. ↑ "Cyanophora Genome v2 Project". cyanophora.rutgers.edu/cyanophora_v2018. Retrieved 2019-08-01.
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  21. ↑ Gao C, Wang Y, Shen Y, Yan D, He X, Dai J, Wu Q (July 2014). "Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes". BMC Genomics. 15 (1): 582. doi: 10.1186/1471-2164-15-582 . PMC   4111847 . PMID   25012212.
  22. ↑ Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, et al. (August 2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi: 10.1186/gb-2012-13-8-r74 . PMC   3491373 . PMID   22925495.
  23. ↑ "Phytozome". phytozome.jgi.doe.gov. Retrieved 2018-07-12.
  24. 1 2 3 4 5 6 7 8 "Phytozome". phytozome.jgi.doe.gov. Retrieved 2018-07-12.
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  27. ↑ "ASM311615v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
  28. ↑ Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, et al. (September 2010). "The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex". The Plant Cell. 22 (9): 2943–55. doi:10.1105/tpc.110.076406. PMC   2965543 . PMID   20852019.
  29. ↑ "ASM102112v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
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