LITAF

LITAF
Identifiers
Aliases	LITAF , PIG7, SIMPLE, TP53I7, lipopolysaccharide induced TNF factor
External IDs	OMIM: 603795; MGI: 1929512; HomoloGene: 37974; GeneCards: LITAF; OMA:LITAF - orthologs
Gene location (Human) Chr. Chromosome 16 (human) [1] Band 16p13.13 Start 11,547,722 bp [1] End 11,636,381 bp [1]
Gene location (Mouse) Chr. Chromosome 16 (mouse) [2] Band 16|16 A1 Start 10,777,139 bp [2] End 10,884,021 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in blood palpebral conjunctiva periodontal fiber visceral pleura mucosa of urinary bladder appendix tibia granulocyte canal of the cervix gallbladder Top expressed in granulocyte endothelial cell of lymphatic vessel stroma of bone marrow blood decidua vestibular sensory epithelium left colon gastrula vestibular membrane of cochlear duct skin of external ear More reference expression data BioGPS More reference expression data
Gene ontology Molecular function signal transducer activity protein binding WW domain binding zinc ion binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA binding metal ion binding Cellular component membrane nucleoplasm lysosomal membrane lysosome cytosol cytoplasmic side of plasma membrane cytoplasmic side of early endosome membrane cytoplasmic side of late endosome membrane cytoplasmic side of lysosomal membrane Golgi membrane nucleus cytoplasm endosome Golgi apparatus plasma membrane endosome membrane early endosome membrane late endosome membrane intracellular membrane-bounded organelle integral component of membrane Biological process regulation of transcription, DNA-templated regulation of transcription by RNA polymerase II ageing transcription, DNA-templated regulation of cytokine production response to lipopolysaccharide positive regulation of I-kappaB kinase/NF-kappaB signaling cellular response to lipopolysaccharide signal transduction transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 9516 56722 Ensembl ENSG00000189067 ENSMUSG00000022500 UniProt Q99732 Q9JLJ0 RefSeq (mRNA) NM_001136472 NM_001136473 NM_004862 NM_019980 RefSeq (protein) NP_001129944 NP_001129945 NP_004853 NP_064364 Location (UCSC) Chr 16: 11.55 – 11.64 Mb Chr 16: 10.78 – 10.88 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Lipopolysaccharide-induced tumor necrosis factor-alpha factor is a protein that in humans is encoded by the LITAF gene. ^{[5] [6] [7]}

It is associated with Charcot–Marie–Tooth disease 1C.

References

1. GRCh38: Ensembl release 89: ENSG00000189067 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000022500 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Polyak K, Xia Y, Zweier JL, Kinzler KW, Vogelstein B (Sep 1997). "A model for p53-induced apoptosis". Nature. 389 (6648): 300–5. Bibcode:1997Natur.389..300P. doi:10.1038/38525. PMID   9305847. S2CID   4429638.
6. Myokai F, Takashiba S, Lebo R, Amar S (May 1999). "A novel lipopolysaccharide-induced transcription factor regulating tumor necrosis factor alpha gene expression: molecular cloning, sequencing, characterization, and chromosomal assignment". Proc Natl Acad Sci U S A. 96 (8): 4518–23. Bibcode:1999PNAS...96.4518M. doi: 10.1073/pnas.96.8.4518 . PMC   16364 . PMID   10200294.
7. "Entrez Gene: LITAF lipopolysaccharide-induced TNF factor".

External links

• GeneReviews/NCBI/NIH/UW entry on Charcot-Marie-Tooth Neuropathy Type 1

Further reading

• Jolliffe CN, Harvey KF, Haines BP, et al. (2001). "Identification of multiple proteins expressed in murine embryos as binding partners for the WW domains of the ubiquitin-protein ligase Nedd4". Biochem. J. 351 (3): 557–65. doi:10.1042/0264-6021:3510557. PMC   1221394 . PMID   11042109.
• Moriwaki Y, Begum NA, Kobayashi M, et al. (2001). "Mycobacterium bovis Bacillus Calmette-Guerin and its cell wall complex induce a novel lysosomal membrane protein, SIMPLE, that bridges the missing link between lipopolysaccharide and p53-inducible gene, LITAF(PIG7), and estrogen-inducible gene, EET-1". J. Biol. Chem. 276 (25): 23065–76. doi: 10.1074/jbc.M011660200 . PMID   11274176.
• Street VA, Goldy JD, Golden AS, et al. (2002). "Mapping of Charcot-Marie-Tooth disease type 1C to chromosome 16p identifies a novel locus for demyelinating neuropathies". Am. J. Hum. Genet. 70 (1): 244–50. doi:10.1086/337943. PMC   384893 . PMID   11713717.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Street VA, Bennett CL, Goldy JD, et al. (2003). "Mutation of a putative protein degradation gene LITAF/SIMPLE in Charcot-Marie-Tooth disease 1C". Neurology. 60 (1): 22–6. doi:10.1212/wnl.60.1.22. PMID   12525712. S2CID   7495837.
• Matsuda A, Suzuki Y, Honda G, et al. (2003). "Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways". Oncogene. 22 (21): 3307–18. doi:10.1038/sj.onc.1206406. PMID   12761501. S2CID   38880905.
• Street VA, Bennett CL, Bird TD, Chance PF (2004). "New gene for CMT". J. Peripher. Nerv. Syst. 8 (4): 206. doi:10.1111/j.1085-9489.2003.03025.x. PMID   14641644. S2CID   12117063.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Ludes-Meyers JH, Kil H, Bednarek AK, et al. (2004). "WWOX binds the specific proline-rich ligand PPXY: identification of candidate interacting proteins". Oncogene. 23 (29): 5049–55. doi:10.1038/sj.onc.1207680. PMC   4143251 . PMID   15064722.
• Bennett CL, Shirk AJ, Huynh HM, et al. (2004). "SIMPLE mutation in demyelinating neuropathy and distribution in sciatic nerve". Ann. Neurol. 55 (5): 713–20. doi:10.1002/ana.20094. PMID   15122712. S2CID   7719672.
• Matsumura Y, Matsumura Y, Nishigori C, et al. (2004). "PIG7/LITAF gene mutation and overexpression of its gene product in extramammary Paget's disease". Int. J. Cancer. 111 (2): 218–23. doi:10.1002/ijc.20251. PMID   15197774. S2CID   27155753.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Saifi GM, Szigeti K, Wiszniewski W, et al. (2006). "SIMPLE mutations in Charcot-Marie-Tooth disease and the potential role of its protein product in protein degradation". Hum. Mutat. 25 (4): 372–83. doi:10.1002/humu.20153. PMID   15776429. S2CID   20127440.
• Meggouh F, de Visser M, Arts WF, et al. (2005). "Early onset neuropathy in a compound form of Charcot-Marie-Tooth disease". Ann. Neurol. 57 (4): 589–91. doi:10.1002/ana.20434. PMID   15786462. S2CID   32014135.
• Tang X, Marciano DL, Leeman SE, Amar S (2005). "LPS induces the interaction of a transcription factor, LPS-induced TNF-alpha factor, and STAT6(B) with effects on multiple cytokines". Proc. Natl. Acad. Sci. U.S.A. 102 (14): 5132–7. Bibcode:2005PNAS..102.5132T. doi: 10.1073/pnas.0501159102 . PMC   555602 . PMID   15793005.
• Beauvais K, Furby A, Latour P (2006). "Clinical, electrophysiological and molecular genetic studies in a family with X-linked dominant Charcot-Marie-Tooth neuropathy presenting a novel mutation in GJB1 Promoter and a rare polymorphism in LITAF/SIMPLE". Neuromuscul. Disord. 16 (1): 14–8. doi:10.1016/j.nmd.2005.09.008. PMID   16373087. S2CID   32730191.
• Latour P, Gonnaud PM, Ollagnon E, et al. (2006). "SIMPLE mutation analysis in dominant demyelinating Charcot-Marie-Tooth disease: three novel mutations". J. Peripher. Nerv. Syst. 11 (2): 148–55. doi: 10.1111/j.1085-9489.2006.00080.x . PMID   16787513. S2CID   24702162.
• Stucchi A, Reed K, O'Brien M, et al. (2007). "A new transcription factor that regulates TNF-alpha gene expression, LITAF, is increased in intestinal tissues from patients with CD and UC". Inflamm. Bowel Dis. 12 (7): 581–7. doi: 10.1097/01.MIB.0000225338.14356.d5 . PMID   16804395. S2CID   28836872.