Collagen, type V, alpha 2

COL5A2
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1A9A
Identifiers
Aliases	COL5A2 , EDSC, collagen type V alpha 2, collagen type V alpha 2 chain, EDSCL2
External IDs	OMIM: 120190 MGI: 88458 HomoloGene: 20119 GeneCards: COL5A2
Gene location (Human) Chr. Chromosome 2 (human) [1] Band 2q32.2 Start 189,031,898 bp [1] End 189,225,312 bp [1]
Gene location (Mouse) Chr. Chromosome 1 (mouse) [2] Band 1|1 C1.1 Start 45,413,481 bp [2] End 45,542,442 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in periodontal fiber stromal cell of endometrium tibia visceral pleura parietal pleura synovial joint smooth muscle tissue synovial membrane gallbladder saphenous vein Top expressed in calvaria body of femur fossa dermis molar condyle internal carotid artery external carotid artery vas deferens ankle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function metal ion binding extracellular matrix structural constituent SMAD binding molecular function extracellular matrix structural constituent conferring tensile strength Cellular component extracellular region endoplasmic reticulum lumen collagen collagen type V trimer extracellular matrix extracellular space collagen-containing extracellular matrix Biological process eye morphogenesis skeletal system development collagen catabolic process ossification extracellular matrix organization cellular response to amino acid stimulus negative regulation of endodermal cell differentiation skin development collagen fibril organization notochord development Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1290 12832 Ensembl ENSG00000204262 ENSMUSG00000026042 UniProt P05997 Q3U962 RefSeq (mRNA) NM_000393 NM_007737 NM_172972 RefSeq (protein) NP_000384 NP_031763 Location (UCSC) Chr 2: 189.03 – 189.23 Mb Chr 1: 45.41 – 45.54 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Collagen alpha-2(V) chain is a protein that in humans is encoded by the COL5A2 gene. ^{[5] [6]}

This gene encodes an alpha chain for one of the low abundance fibrillar collagens. Fibrillar collagen molecules are trimers that can be composed of one or more types of alpha chains. Type V collagen is found in tissues containing type I collagen and appears to regulate the assembly of heterotypic fibers composed of both type I and type V collagen. This gene product is closely related to type XI collagen and it is possible that the collagen chains of types V and XI constitute a single collagen type with tissue-specific chain combinations. Mutations in this gene are associated with Ehlers-Danlos syndrome, classical type, formerly known as types I and II. ^[6]

See also

• Type-V collagen
• TSR1

References

1. GRCh38: Ensembl release 89: ENSG00000204262 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000026042 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Greenspan DS, Byers MG, Eddy RL, Cheng W, Jani-Sait S, Shows TB (May 1992). "Human collagen gene COL5A1 maps to the q34.2----q34.3 region of chromosome 9, near the locus for nail-patella syndrome". Genomics. 12 (4): 836–7. doi:10.1016/0888-7543(92)90320-R. PMID   1572660.
6. "Entrez Gene: COL5A2 collagen, type V, alpha 2".

Further reading

• Mann K (1992). "Isolation of the alpha 3-chain of human type V collagen and characterization by partial sequencing". Biol. Chem. Hoppe-Seyler. 373 (2): 69–75. doi:10.1515/bchm3.1992.373.1.69. PMID   1571108.
• Greenspan DS, Lee ST, Lee BS, Hoffman GG (1992). "Homology between alpha 2(V) and alpha 1(III) collagen promoters and evidence for negatively acting elements in the alpha 2(V) first intron and 5' flanking sequences". Gene Expr. 1 (1): 29–39. PMC   5952197 . PMID   1820205.
• Myers JC, Loidl HR, Seyer JM, Dion AS (1985). "Complete primary structure of the human alpha 2 type V procollagen COOH-terminal propeptide". J. Biol. Chem. 260 (20): 11216–22. doi: 10.1016/S0021-9258(17)39168-8 . PMID   2411731.
• Woodbury D, Benson-Chanda V, Ramirez F (1989). "Amino-terminal propeptide of human pro-alpha 2(V) collagen conforms to the structural criteria of a fibrillar procollagen molecule". J. Biol. Chem. 264 (5): 2735–8. doi: 10.1016/S0021-9258(19)81674-5 . PMID   2914927.
• Myers JC, Loidl HR, Stolle CA, Seyer JM (1985). "Partial covalent structure of the human alpha 2 type V collagen chain". J. Biol. Chem. 260 (9): 5533–41. doi: 10.1016/S0021-9258(18)89055-X . PMID   2985598.
• Weil D, Bernard M, Gargano S, Ramirez F (1987). "The pro alpha 2(V) collagen gene is evolutionarily related to the major fibrillar-forming collagens". Nucleic Acids Res. 15 (1): 181–98. doi:10.1093/nar/15.1.181. PMC   340404 . PMID   3029669.
• Tsipouras P, Schwartz RC, Liddell AC, et al. (1989). "Genetic distance of two fibrillar collagen loci, COL3A1 and COL5A2, located on the long arm of human chromosome 2". Genomics. 3 (3): 275–7. doi:10.1016/0888-7543(88)90089-4. PMID   3224983.
• Emanuel BS, Cannizzaro LA, Seyer JM, Myers JC (1985). "Human alpha 1(III) and alpha 2(V) procollagen genes are located on the long arm of chromosome 2". Proc. Natl. Acad. Sci. U.S.A. 82 (10): 3385–9. Bibcode:1985PNAS...82.3385E. doi: 10.1073/pnas.82.10.3385 . PMC   397780 . PMID   3858826.
• Moradi-Améli M, Rousseau JC, Kleman JP, et al. (1994). "Diversity in the processing events at the N-terminus of type-V collagen". Eur. J. Biochem. 221 (3): 987–95. doi: 10.1111/j.1432-1033.1994.tb18815.x . PMID   8181482.
• Wright GD, Hughes AE, Regan M, Doherty M (1996). "Association of two loci on chromosome 2q with nodal osteoarthritis". Ann. Rheum. Dis. 55 (5): 317–9. doi:10.1136/ard.55.5.317. PMC   1010169 . PMID   8660106.
• Michalickova K, Susic M, Willing MC, et al. (1998). "Mutations of the alpha2(V) chain of type V collagen impair matrix assembly and produce ehlers-danlos syndrome type I". Hum. Mol. Genet. 7 (2): 249–55. doi:10.1093/hmg/7.2.249. PMID   9425231.
• Bertelli R, Valenti F, Oleggini R, et al. (1998). "Cell-specific regulation of alpha1(III) and alpha2(V) collagen by TGF-beta1 in tubulointerstitial cell models". Nephrol. Dial. Transplant. 13 (3): 573–9. doi: 10.1093/ndt/13.3.573 . PMID   9550630.
• Shrivastava A, Radziejewski C, Campbell E, et al. (1998). "An orphan receptor tyrosine kinase family whose members serve as nonintegrin collagen receptors". Mol. Cell. 1 (1): 25–34. doi: 10.1016/S1097-2765(00)80004-0 . PMID   9659900.
• Richards AJ, Martin S, Nicholls AC, et al. (1999). "A single base mutation in COL5A2 causes Ehlers-Danlos syndrome type II". J. Med. Genet. 35 (10): 846–8. doi:10.1136/jmg.35.10.846. PMC   1051462 . PMID   9783710.
• Wenstrup RJ, Florer JB, Willing MC, et al. (2001). "COL5A1 haploinsufficiency is a common molecular mechanism underlying the classical form of EDS". Am. J. Hum. Genet. 66 (6): 1766–76. doi:10.1086/302930. PMC   1378044 . PMID   10777716.
• Välkkilä M, Melkoniemi M, Kvist L, et al. (2002). "Genomic organization of the human COL3A1 and COL5A2 genes: COL5A2 has evolved differently than the other minor fibrillar collagen genes". Matrix Biol. 20 (5–6): 357–66. doi:10.1016/S0945-053X(01)00145-7. PMID   11566270.
• Unsöld C, Pappano WN, Imamura Y, et al. (2002). "Biosynthetic processing of the pro-alpha 1(V)2pro-alpha 2(V) collagen heterotrimer by bone morphogenetic protein-1 and furin-like proprotein convertases". J. Biol. Chem. 277 (7): 5596–602. doi: 10.1074/jbc.M110003200 . PMID   11741999.
• Grond-Ginsbach C, Wigger F, Morcher M, et al. (2002). "Sequence analysis of the COL5A2 gene in patients with spontaneous cervical artery dissections". Neurology. 58 (7): 1103–5. doi:10.1212/wnl.58.7.1103. PMID   11940702. S2CID   11310943.
• Takahara K, Schwarze U, Imamura Y, et al. (2002). "Order of Intron Removal Influences Multiple Splice Outcomes, Including a Two-Exon Skip, in a COL5A1 Acceptor-Site Mutation That Results in Abnormal Pro-α1(V) N-Propeptides and Ehlers-Danlos Syndrome Type I". Am. J. Hum. Genet. 71 (3): 451–65. doi:10.1086/342099. PMC   379186 . PMID   12145749.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.

External links

• Ehlers-Danlos Syndrome, Classic Type. Includes: Ehlers-Danlos Syndrome Type I, Ehlers-Danlos Syndrome Type II