MMP16

MMP16
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1RM8
Identifiers
Aliases	MMP16 , C8orf57, MMP-X2, MT-MMP2, MT-MMP3, MT3-MMP, matrix metallopeptidase 16
External IDs	OMIM: 602262; MGI: 1276107; HomoloGene: 55939; GeneCards: MMP16; OMA:MMP16 - orthologs
Gene location (Human) Chr. Chromosome 8 (human) [1] Band 8q21.3 Start 88,032,011 bp [1] End 88,328,025 bp [1]
Gene location (Mouse) Chr. Chromosome 4 (mouse) [2] Band 4 A3|4 7.08 cM Start 17,852,893 bp [2] End 18,119,145 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in endothelial cell tibia Brodmann area 23 cartilage tissue postcentral gyrus middle temporal gyrus entorhinal cortex superior frontal gyrus stromal cell of endometrium ventricular zone Top expressed in calvaria body wall rib body of femur genital tubercle umbilical cord Rostral migratory stream lumbar subsegment of spinal cord tail of embryo pineal gland More reference expression data BioGPS More reference expression data
Gene ontology Molecular function metal ion binding peptidase activity enzyme activator activity hydrolase activity metallopeptidase activity metalloendopeptidase activity zinc ion binding metalloaminopeptidase activity Cellular component integral component of membrane membrane extracellular matrix plasma membrane extracellular region cell surface Golgi lumen integral component of plasma membrane extracellular space Biological process ossification extracellular matrix disassembly endochondral ossification craniofacial suture morphogenesis chondrocyte proliferation collagen catabolic process embryonic cranial skeleton morphogenesis bone development positive regulation of catalytic activity proteolysis protein processing protein metabolic process skeletal system development extracellular matrix organization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 4325 17389 Ensembl ENSG00000156103 ENSMUSG00000028226 UniProt P51512 Q9WTR0 RefSeq (mRNA) NM_005941 NM_022564 NM_032297 NM_019724 NM_001379518 NM_001379519 RefSeq (protein) NP_005932 NP_062698 NP_001366447 NP_001366448 Location (UCSC) Chr 8: 88.03 – 88.33 Mb Chr 4: 17.85 – 18.12 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Matrix metalloproteinase-16 is an enzyme that in humans is encoded by the MMP16 gene. ^{[5] [6]}

Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. This gene produces at least two transcripts, one which encodes a membrane-bound form and another a soluble form of the protein. Both forms of the protein activate MMP2 by cleavage. This gene was once referred to as MT-MMP2, but was renamed as MT-MMP3 or MMP16. ^[6]

References

1. GRCh38: Ensembl release 89: ENSG00000156103 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000028226 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Takino T, Sato H, Shinagawa A, Seiki M (Nov 1995). "Identification of the second membrane-type matrix metalloproteinase (MT-MMP-2) gene from a human placenta cDNA library. MT-MMPs form a unique membrane-type subclass in the MMP family". J Biol Chem. 270 (39): 23013–20. doi: 10.1074/jbc.270.39.23013 . PMID   7559440.
6. "Entrez Gene: MMP16 matrix metallopeptidase 16 (membrane-inserted)".

Further reading

• Nagase H, Woessner JF (1999). "Matrix metalloproteinases". J. Biol. Chem. 274 (31): 21491–4. doi: 10.1074/jbc.274.31.21491 . PMID   10419448.
• Andersson B, Wentland MA, Ricafrente JY (1996). "A "double adaptor" method for improved shotgun library construction". Anal. Biochem. 236 (1): 107–13. doi:10.1006/abio.1996.0138. PMID   8619474.
• Mattei MG, Roeckel N, Olsen BR, Apte SS (1997). "Genes of the membrane-type matrix metalloproteinase (MT-MMP) gene family, MMP14, MMP15, and MMP16, localize to human chromosomes 14, 16, and 8, respectively". Genomics. 40 (1): 168–9. doi:10.1006/geno.1996.4559. PMID   9070935.
• Shofuda K, Yasumitsu H, Nishihashi A (1997). "Expression of three membrane-type matrix metalloproteinases (MT-MMPs) in rat vascular smooth muscle cells and characterization of MT3-MMPs with and without transmembrane domain". J. Biol. Chem. 272 (15): 9749–54. doi: 10.1074/jbc.272.15.9749 . PMID   9092507.
• Yu W, Andersson B, Worley KC (1997). "Large-Scale Concatenation cDNA Sequencing". Genome Res. 7 (4): 353–8. doi:10.1101/gr.7.4.353. PMC   139146 . PMID   9110174.
• Sato H, Tanaka M, Takino T (1997). "Assignment of the human genes for membrane-type-1, -2, and -3 matrix metalloproteinases (MMP14, MMP15, and MMP16) to 14q12.2, 16q12.2-q21, and 8q21, respectively, by in situ hybridization". Genomics. 39 (3): 412–3. doi:10.1006/geno.1996.4496. PMID   9119382.
• Matsumoto S, Katoh M, Saito S (1998). "Identification of soluble type of membrane-type matrix metalloproteinase-3 formed by alternatively spliced mRNA". Biochim. Biophys. Acta. 1354 (2): 159–70. doi:10.1016/s0167-4781(97)00120-6. PMID   9396633.
• Terp GE, Christensen IT, Jørgensen FS (2000). "Structural differences of matrix metalloproteinases. Homology modeling and energy minimization of enzyme-substrate complexes". J. Biomol. Struct. Dyn. 17 (6): 933–46. doi:10.1080/07391102.2000.10506582. PMID   10949161. S2CID   1270176.
• Iida J, Pei D, Kang T (2001). "Melanoma chondroitin sulfate proteoglycan regulates matrix metalloproteinase-dependent human melanoma invasion into type I collagen". J. Biol. Chem. 276 (22): 18786–94. doi: 10.1074/jbc.M010053200 . PMID   11278606.
• Strausberg RL, Feingold EA, Grouse LH (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Jung M, Römer A, Keyszer G (2003). "mRNA expression of the five membrane-type matrix metalloproteinases MT1-MT5 in human prostatic cell lines and their down-regulation in human malignant prostatic tissue". Prostate. 55 (2): 89–98. doi:10.1002/pros.10194. PMID   12661033. S2CID   21596144.
• Takino T, Koshikawa N, Miyamori H (2003). "Cleavage of metastasis suppressor gene product KiSS-1 protein/metastin by matrix metalloproteinases". Oncogene. 22 (30): 4617–26. doi:10.1038/sj.onc.1206542. hdl: 2297/2668 . PMID   12879005. S2CID   10007952.
• Rozanov DV, Hahn-Dantona E, Strickland DK, Strongin AY (2004). "The low density lipoprotein receptor-related protein LRP is regulated by membrane type-1 matrix metalloproteinase (MT1-MMP) proteolysis in malignant cells". J. Biol. Chem. 279 (6): 4260–8. doi: 10.1074/jbc.M311569200 . PMID   14645246.
• Lang R, Braun M, Sounni NE (2004). "Crystal structure of the catalytic domain of MMP-16/MT3-MMP: characterization of MT-MMP specific features" (PDF). J. Mol. Biol. 336 (1): 213–25. doi:10.1016/j.jmb.2003.12.022. hdl:2268/12040. PMID   14741217.
• Shofuda T, Shofuda K, Ferri N (2004). "Cleavage of focal adhesion kinase in vascular smooth muscle cells overexpressing membrane-type matrix metalloproteinases" (PDF). Arterioscler. Thromb. Vasc. Biol. 24 (5): 839–44. doi: 10.1161/01.ATV.0000126680.78500.4c . PMID   15044209. S2CID   22959266.
• Wang SC, Lien HC, Xia W (2004). "Binding at and transactivation of the COX-2 promoter by nuclear tyrosine kinase receptor ErbB-2". Cancer Cell. 6 (3): 251–61. doi: 10.1016/j.ccr.2004.07.012 . PMID   15380516.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Kimura K, Wakamatsu A, Suzuki Y (2006). "Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC   1356129 . PMID   16344560.

External links

• The MEROPS online database for peptidases and their inhibitors: M10.016
• Overview of all the structural information available in the PDB for UniProt : P51512 (Matrix metalloproteinase-16) at the PDBe-KB .