| Phakopsora pachyrhizi | |
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Scientific classification  | |
| Domain: | Eukaryota |
| Kingdom: | Fungi |
| Division: | Basidiomycota |
| Class: | Pucciniomycetes |
| Order: | Pucciniales |
| Family: | Phakopsoraceae |
| Genus: | Phakopsora |
| Species: | P. pachyrhizi |
| Binomial name | |
| Phakopsora pachyrhizi | |
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| Contour map showing numbers of NADP sites testing positive for P. pachyrhizi in the center and east of US in 2006 | |
| Synonyms | |
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Phakopsora pachyrhizi is a plant pathogen. It causes Asian soybean rust.
Phakopsora pachyrhizi is an obligate biotrophic pathogen that causes Asian soybean rust. Phakopsora pachyrhizi is able to affect up to 31 different plant species that belong to 17 different genera under natural conditions. Experiments in laboratories were able to use P. pachyrhizi to infect 60 more plant species. [1] [2] The main hosts are Glycine max (soybean), Glycine soja (wild soybean), and Pachyrhizus erosus (Jicama).
*Preferred hosts. Other hosts were minor or determined experimentally under artificial conditions.
The disease forms tan to dark-brown or reddish-brown lesions with one to many prominent, globe-like orifices. [4] Urediniospores form from these pores. [5] At initial stages, small yellow spots are formed on the surface of the leaf. These spots may be better observed using assistance of a light source. As the disease progresses, lesions start to form on the leaves, stems, pod, and petioles. Lesions are initially small, turning from gray to tan or brown as they increase in size and the disease gets more severe. Soon volcano-shaped marks are noticed in the lesions. [6]
Phakopsora pachyrhizi is a fungus which has a spore moved by wind, called urediniospore. These spores are quite different from others as they don't need an open stomata or natural openings in the leaves. Urediniospores are able to penetrate the leaf. Pustules are visible after 10 days and they can produce spores for three weeks. [7] The disease reaches its climax when the crop begins flowering. The cycle of the pathogen continues until the crop is defoliated or until the environment becomes unfavorable to the pathogen. [8]
The Asian soybean rust is a polycyclic disease: within the disease cycle, the asexual urediniospores keep infecting the same plant. Teliospores (sexual spores) are the survival spores that overwinter in the soil. Basidiospores are the spores that are able to contaminate an alternative host. The urediniospores need a minimum of six hours to infect leaves at a favorable temperature (between 15 and 24 °C (59 and 75 °F)). [9]
The favorable conditions for the disease to progress are related to temperature, humidity, and wind. The appropriate temperature for the pathogen to be active is 12 to 29 °C (54 to 84 °F) (more efficient between 18 and 26.5 °C (64.4 and 79.7 °F)). The humidity must be high, about 90% or more, for more than 12 hours. A significant amount of wind is also important for the pathogen to move from one plant to the other. [6] [9] Currently, in the United States, infected plants can be found in Florida, Georgia, Louisiana, and Texas. [2]
Uredospores are wind-blown and are produced abundantly on the infected tissue of soybeans or other legume hosts. [4]
The disease is often controlled using the fungicides oxycarboxin, triforine, and triclopyr. [4]
Phakospsora pachyrhizi is a pathogen that acts quickly in contaminating the host. The plant can be severely contaminated in as short a period as 10 days. This makes it difficult to control the disease, as it does not just spread quickly, but its progression is also fast. That is why it is important to implement control techniques as soon as possible.
The disease may be controlled by using genetic resistance, but this has not exhibited great results and has not been durable [6] because the soybean genome almost entirely lacks potential genes for ASR resistance. [Kawashima et al 2016 1]
A second form of management that can work is using fungicides, but this is only efficient at early stages of the disease. The disease spreads fast and it is complicated to control after certain stages, so it is important to act with care around contaminated plants, as the spores can be attached to clothing and other materials and infect other plants. [2]
Genetic modification for infection factor dissection – including knockout, including of effectors – proves difficult. [10] Host-induced gene silencing may be the better tool for this pathogen. [10]
Rusts are fungal plant pathogens of the order Pucciniales causing plant fungal diseases.
Soybean rust is a disease that affects soybeans and other legumes. It is caused by two types of fungi, Phakopsora pachyrhizi, commonly known as Asian soybean rust, and Phakopsora meibomiae, commonly known as New World soybean rust. P. meibomiae is the weaker pathogen of the two and generally does not cause widespread problems. The disease has been reported across Asia, Australia, Africa, South America and the United States.
Hemileia vastatrix is a multicellular basidiomycete fungus of the order Pucciniales that causes coffee leaf rust (CLR), a disease affecting the coffee plant. Coffee serves as the obligate host of coffee rust, that is, the rust must have access to and come into physical contact with coffee in order to survive.
Stem rust, also known as cereal rust, black rust, red rust or red dust, is caused by the fungus Puccinia graminis, which causes significant disease in cereal crops. Crop species that are affected by the disease include bread wheat, durum wheat, barley and triticale. These diseases have affected cereal farming throughout history. The annual recurrence of stem rust of wheat in North Indian plains was discovered by K.C. Mehta. Since the 1950s, wheat strains bred to be resistant to stem rust have become available. Fungicides effective against stem rust are available as well.
Wheat leaf rust is a fungal disease that affects wheat, barley, rye stems, leaves and grains. In temperate zones it is destructive on winter wheat because the pathogen overwinters. Infections can lead up to 20% yield loss. The pathogen is a Puccinia rust fungus. It is the most prevalent of all the wheat rust diseases, occurring in most wheat-growing regions. It causes serious epidemics in North America, Mexico and South America and is a devastating seasonal disease in India. P. triticina is heteroecious, requiring two distinct hosts.
Phytophthora sojae is an oomycete and a soil-borne plant pathogen that causes stem and root rot of soybean. This is a prevalent disease in most soybean growing regions, and a major cause of crop loss. In wet conditions the pathogen produces zoospores that move in water and are attracted to soybean roots. Zoospores can attach to roots, germinate, and infect the plant tissues. Diseased roots develop lesions that may spread up the stem and eventually kill the entire plant. Phytophthora sojae also produces oospores that can remain dormant in the soil over the winter, or longer, and germinate when conditions are favourable. Oospores may also be spread by animals or machinery.
Thielaviopsis basicola is the plant-pathogen fungus responsible for black root rot disease. This particular disease has a large host range, affecting woody ornamentals, herbaceous ornamentals, agronomic crops, and even vegetable crops. Examples of susceptible hosts include petunia, pansy, poinsettia, tobacco, cotton, carrot, lettuce, tomato, and others. Symptoms of this disease resemble nutrient deficiency but are truly a result of the decaying root systems of plants. Common symptoms include chlorotic lower foliage, yellowing of plant, stunting or wilting, and black lesions along the roots. The lesions along the roots may appear red at first, getting darker and turning black as the disease progresses. Black root lesions that begin in the middle of a root can also spread further along the roots in either direction. Due to the nature of the pathogen, the disease can easily be identified by the black lesions along the roots, especially when compared to healthy roots. The black lesions that appear along the roots are a result of the formation of chlamydospores, resting spores of the fungus that contribute to its pathogenicity. The chlamydospores are a dark brown-black color and cause the "discoloration" of the roots when they are produced in large amounts.
Pyrenophora tritici-repentis (teleomorph) and Drechslera tritici-repentis (anamorph) is a necrotrophic plant pathogen of fungal origin, phylum Ascomycota. The pathogen causes a disease originally named yellow spot but now commonly called tan spot, yellow leaf spot, yellow leaf blotch or helminthosporiosis. At least eight races of the pathogen are known to occur based on their virulence on a wheat differential set.
Peronospora manshurica is a plant pathogen. It is a widespread disease on the leaves of soybeans and other crop plants. The fungi is commonly referred to as downy mildew, "leafspot", or "leaf-spot".
Puccinia asparagi is the causative agent of asparagus rust. It is an autoecious fungus, meaning that all stages of its life cycle – pycniospores, aeciospores, and teliospores – all develop upon the same host plant . Rust diseases are among the most destructive plant diseases, known to cause famine following destruction of grains, vegetables, and legumes. Asparagus rust occurs wherever the plant is grown and attacks asparagus plants during and after the cutting season. Asparagus spears are usually harvested before extensive rust symptoms appear. Symptoms are first noticeable on the growing shoots in early summer as light green, oval lesions, followed by tan blister spots and black, protruding blisters later in the season. The lesions are symptoms of Puccinia asparagi during early spring, mid-summer and later summer to fall, respectively. Severe rust infections stunt or kill young asparagus shoots, causing foliage to fall prematurely, and reduce the ability of the plant to store food reserves. The Puccinia asparagi fungus accomplishes this by rust lowering the amounts of root storage metabolites. The infected plant has reduced plant vigor and yield, often leading to death in severe cases. Most rust diseases have several stages, some of which may occur on different hosts; however, in asparagus rust all the life stages occur on asparagus. Because of this, many observers mistake the different stages of the Puccinia asparagi life cycle as the presence of different diseases. The effects of Puccinia asparagi are present worldwide wherever asparagus is being grown. Asparagus rust is a serious threat to the asparagus industry.
Puccinia coronata is a plant pathogen and causal agent of oat and barley crown rust. The pathogen occurs worldwide, infecting both wild and cultivated oats. Crown rust poses a threat to barley production, because the first infections in barley occur early in the season from local inoculum. Crown rusts have evolved many different physiological races within different species in response to host resistance. Each pathogenic race can attack a specific line of plants within the species typical host. For example, there are over 290 races of P. coronata. Crops with resistant phenotypes are often released, but within a few years virulent races have arisen and P. coronata can infect them.
Melampsora lini is a species of fungus and plant pathogen found in Ireland and commonly known as flax rust.
Cercospora sojina is a fungal plant pathogen which causes frogeye leaf spot of soybeans. Frog eye leaf spot is a major disease on soybeans in the southern U.S. and has recently started to expand into the northern U.S. where soybeans are grown. The disease is also found in other soybean production areas of the world.
Plant disease resistance protects plants from pathogens in two ways: by pre-formed structures and chemicals, and by infection-induced responses of the immune system. Relative to a susceptible plant, disease resistance is the reduction of pathogen growth on or in the plant, while the term disease tolerance describes plants that exhibit little disease damage despite substantial pathogen levels. Disease outcome is determined by the three-way interaction of the pathogen, the plant and the environmental conditions.
Austropuccinia is a monotypic genus of rust native to South America with the only species Austropuccinia psidii, commonly known as myrtle rust, guava rust, or ʻōhiʻa rust. It affects plants in the family Myrtaceae. It is a member of the fungal complex called the guava rust group. The spores have a distinctive yellow to orange colour, occasionally encircled by a purple ring. They are found on lesions on new growth including shoots, leaves, buds and fruits. Leaves become twisted and may die. Infections in highly susceptible species may result in the death of the host plant.
Phragmidium is a genus of rust fungus that typically infects plant species in the family Rosaceae. It is characterised by having stalked teliospores borne on telia each having a row of four or more cells. All species have a caeoma which is a diffuse aecidium lacking a peridium.
Phakopsora euvitis is a rust fungus that causes disease of grape leaves. This rust fungus has been seen in regions including: Eastern Asia, Southern Asia, Southwestern Brazil, the Americas, and northern Australia. It is widely distributed in eastern and southern Asia but was first discovered on grapevines in Darwin, Australia in 2001 and was identified as Asian grapevine leaf rust by July 2007.
Melampsora amygdalinae is a fungal pathogen and part of the division Basidiomycota. It is known as a rust fungus that is host specific. M. amygdalinae commonly infects willows of the genus Salix. This fungus was first discovered in 1909 by Heinrich Klebahn who was a professor of soil biology in Hamburg. Neimi at el. explain how the pathogen occurs throughout the whole distribution of the host, and the small natural populations are an area of interest. This rust fungus is annual and autoecious, which references the fungus spending its entire life in a single host.
Puccinia sorghi, or common rust of maize, is a species of rust fungus that infects corn and species from the plant genus Oxalis.
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