Benthos, also known as benthon, is the community of organisms that live on, in, or near the bottom of a sea, river, lake, or stream, also known as the benthic zone. This community lives in or near marine or freshwater sedimentary environments, from tidal pools along the foreshore, out to the continental shelf, and then down to the abyssal depths.
Meiobenthos, also called meiofauna, are small benthic invertebrates that live in marine or freshwater environments, or both. The term meiofauna loosely defines a group of organisms by their size—larger than microfauna but smaller than macrofauna—rather than by their taxonomy. This fauna includes both animals that turn into macrofauna later in life, and those small enough to belong to the meiobenthos their entire life. In marine environments there can be thousands of individuals in 10 cubic centimeters of sediment, and counts animals like nematodes, copepods, rotifers, tardigrades and ostracods, but protists like ciliates and foraminifers within the size range of the meiobethos are also often included. In practice, the term usually includes organisms that can pass through a 1 mm mesh but are retained by a 45 μm mesh, though exact dimensions may vary. Whether an organism will pass through a 1 mm mesh also depends upon whether it is alive or dead at the time of sorting.
A cold seep is an area of the ocean floor where seepage of fluids rich in hydrogen sulfide, methane, and other hydrocarbons occurs, often in the form of a brine pool. Cold does not mean that the temperature of the seepage is lower than that of the surrounding sea water; on the contrary, its temperature is often slightly higher. The "cold" is relative to the very warm conditions of a hydrothermal vent. Cold seeps constitute a biome supporting several endemic species.
The benthic zone is the ecological region at the lowest level of a body of water such as an ocean, lake, or stream, including the sediment surface and some sub-surface layers. The name comes from the Ancient Greek word βένθος (bénthos), meaning "the depths". Organisms living in this zone are called benthos and include microorganisms as well as larger invertebrates, such as crustaceans and polychaetes. Organisms here generally live in close relationship with the substrate and many are permanently attached to the bottom. The benthic boundary layer, which includes the bottom layer of water and the uppermost layer of sediment directly influenced by the overlying water, is an integral part of the benthic zone, as it greatly influences the biological activity that takes place there. Examples of contact soil layers include sand bottoms, rocky outcrops, coral, and bay mud.
Bioturbation is defined as the reworking of soils and sediments by animals or plants. It includes burrowing, ingestion, and defecation of sediment grains. Bioturbating activities have a profound effect on the environment and are thought to be a primary driver of biodiversity. The formal study of bioturbation began in the 1800s by Charles Darwin experimenting in his garden. The disruption of aquatic sediments and terrestrial soils through bioturbating activities provides significant ecosystem services. These include the alteration of nutrients in aquatic sediment and overlying water, shelter to other species in the form of burrows in terrestrial and water ecosystems, and soil production on land.
The profundal zone is the deep zone of a lake, located below the range of effective light penetration. This is typically below the thermocline, the vertical zone in the water through which temperature drops rapidly. The temperature difference may be large enough to hamper mixing with the littoral zone in some seasons which causes a decrease in oxygen concentrations. The profundal is often defined, as the deepest, vegetation-free, and muddy zone of the lacustrine benthal. The profundal zone is often part of the aphotic zone. Sediment in the profundal zone primarily comprises silt and mud.
In microbiology, collective bacteria and other microorganisms in a host are historically known as flora. Although microflora is commonly used, the term microbiota is becoming more common as microflora is a misnomer. Flora pertains to the Kingdom Plantae. Microbiota includes Archaea, Bacteria, Fungi and Protists. Microbiota with animal-like characteristics can be classified as microfauna.
Stygofauna are any fauna that live in groundwater systems or aquifers, such as caves, fissures and vugs. Stygofauna and troglofauna are the two types of subterranean fauna. Both are associated with subterranean environments – stygofauna are associated with water, and troglofauna with caves and spaces above the water table. Stygofauna can live within freshwater aquifers and within the pore spaces of limestone, calcrete or laterite, whilst larger animals can be found in cave waters and wells. Stygofaunal animals, like troglofauna, are divided into three groups based on their life history - stygophiles, stygoxenes, and stygobites.
- Stygophiles inhabit both surface and subterranean aquatic environments, but are not necessarily restricted to either.
- Stygoxenes are like stygophiles, except they are defined as accidental or occasional presence in subterranean waters. Stygophiles and stygoxenes may live for part of their lives in caves, but don't complete their life cycle in them.
- Stygobites are obligate, or strictly subterranean, aquatic animals and complete their entire life in this environment.
The Ayalon Cave is a large limestone cave near Ramla, Israel, with a worldwide unique ecosystem. As photosynthesis is not possible inside the completely dark cave, the food chain that developed inside is solely based on bacteria capable of chemosynthesis: the bacteria are consuming the anorganic matter available in the groundwater, and then themselves become the organic food source for the rest of the food chain. As of 2021, Ayalon Cave was one of less than 10 such subterranean ecosystems known in the world, with each of them being distinctly different from the rest. Eight new invertebrate species were discovered there in April 2006 - four seawater and freshwater crustaceans along with four terrestrial animals, one of them a species of blind scorpion – with many more expected to be discovered.
Microfauna refers to microscopic animals and organisms that exhibit animal-like qualities, and have body sizes that are usually <0.1mm. Microfauna are represented in the animal kingdom and the protist kingdom. A large amount of microfauna are soil microfauna which includes protists, rotifers, and nematodes. These types of animal-like protists are heterotrophic, largely feeding on bacteria. However, some microfauna can consume other things, making them detritivores, fungivores, or even predators.
Sediment Profile Imagery (SPI) is an underwater technique for photographing the interface between the seabed and the overlying water. The technique is used to measure or estimate biological, chemical, and physical processes occurring in the first few centimetres of sediment, pore water, and the important benthic boundary layer of water. Time-lapse imaging (tSPI) is used to examine biological activity over natural cycles, like tides and daylight or anthropogenic variables like feeding loads in aquaculture. SPI systems cost between tens and hundreds of thousands of dollars and weigh between 20 and 400 kilograms. Traditional SPI units can be effectively used to explore continental shelf and abyssal depths. Recently developed SPI-Scan or rSPI (rotational SPI) systems can now also be used to inexpensively investigate shallow (<50m) freshwater, estuarine, and marine systems.
Movile Cave is a cave near Mangalia, Constanța County, Romania discovered in 1986 by Cristian Lascu a few kilometers from the Black Sea coast. It is notable for its unique groundwater ecosystem abundant in hydrogen sulfide and carbon dioxide, but low in oxygen. Life in the cave has been separated from the outside for the past 5.5 million years and it is based completely on chemosynthesis rather than photosynthesis.
Macrobenthos consists of the organisms that live at the bottom of a water column and are visible to the naked eye. In some classification schemes, these organisms are larger than 1 mm; in another, the smallest dimension must be at least 0.5 mm. They include polychaete worms, pelecypods, anthozoans, echinoderms, sponges, ascidians, crustaceans.
The mangroves of the Straits of Malacca are found along the coast of Thailand, Malaysia, Singapore and northern Sumatra. These tropical mangrove forests are highly diverse, and are important wetlands with high conservation values. There are two Ramsar sites along the Strait of Malacca: Pulau Kukup and Tanjung Piai.
The benthic boundary layer (BBL) is the layer of water directly above the sediment at the bottom of a body of water. Through specific sedimentation processes, certain organisms are able to live in this deep layer of water. The BBL is generated by the friction of the water moving over the surface of the substrate, which decrease the water current significantly in this layer. The thickness of this zone is determined by many factors, including the Coriolis force. The benthic organisms and processes in this boundary layer echo the water column above them.
An epibenthic sled is an instrument designed to collect benthic and benthopelagic faunas from the deep sea. The sled is made from a steel frame consisting of two skids and stabilizing planes to keep it from sinking too deep into the mud. Attached to the frame is a 1 mm mesh net to collect the samples. The sled is towed along the seafloor at the sediment water interface. The device has a mechanically operated door that is closed when the sled is mid water and opens when it reaches the seafloor. When the fauna is collected, the door closes again to preserve the sample on the long trek back through the water column. The door prevents washing of the sample and loss of organisms through turbulence generated as the net is lifted out. The epibenthic sled can also be used with external sensors and cameras.
Subterranean fauna refers to animal species that are adapted to live in an underground environment. Troglofauna and stygofauna are the two types of subterranean fauna. Both are associated with hypogeal habitats – troglofauna is associated with terrestrial subterranean environment, and stygofauna with all kind of subterranean waters.
There are a number of terms that are used in connection with caves, caving and speleology. The following is an incomplete list.
The Helderberg Marine Protected Area is a small marine conservation area on the north-eastern side of False Bay in the Western Cape province of South Africa, It lies between the mouths of the Lourens River in the Strand, and the Eerste River in Macassar.
Benthic-pelagic coupling are processes that connect the benthic zone and the pelagic zone through the exchange of energy, mass, or nutrients. These processes play a prominent role in both freshwater and marine ecosystems and are influenced by a number of chemical, biological, and physical forces that are crucial to functions from nutrient cycling to energy transfer in food webs.
