Afrotheria

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Afrotheria
Temporal range: PaleoceneHolocene, 65–0  Ma
Afrotheria.jpg
1. Aardvark 2. Dugong 3. Black and rufous elephant shrew 4. West Indian manatee 5. Cape golden mole 6. Rock hyrax 7. African bush elephant 8. Tailless tenrec
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Eukaryota
Kingdom: Animalia
Phylum: Chordata
Class: Mammalia
Infraclass: Placentalia
Superorder: Afrotheria
Stanhope MJ, Waddell VG, Madsen O, de Jong W, Hedges SB, Cleven G, Kao D, Springer MS, 1998
Orders

See below

Afrotheria ( /æfrˈθɪəriə/ from Latin Afro- "of Africa" + theria "wild beast") is a superorder of mammals, the living members of which belong to groups that are either currently living in Africa or of African origin: golden moles, elephant shrews (also known as sengis), otter shrews, tenrecs, aardvarks, hyraxes, elephants, sea cows, and several extinct clades. Most groups of afrotheres share little or no superficial resemblance, and their similarities have only become known in recent times because of genetics and molecular studies. Many afrothere groups are found mostly or exclusively in Africa, reflecting the fact that Africa was an island continent from the Cretaceous until the early Miocene around 20 million years ago, when Afro-Arabia collided with Eurasia.

Because Africa was isolated by water, Laurasian groups of mammals such as insectivores, rodents, lagomorphs, carnivorans and ungulates could not reach Africa for much of the early to mid-Cenozoic. Instead, the niches occupied by those groups on the northern continents were filled by various groups of afrotheres via the process of convergent evolution. The small insectivorous afrotheres such as elephant shrews, golden moles, and tenrecs filled the niches of insectivores, the hyraxes filled the roles of rodents and lagomorphs, the aardvarks filled the roles of various medium size ant-eating mammals (anteaters, armadillos, pangolins, echidnas, numbats, etc.) found on other continents throughout the Cenozoic, and proboscideans (elephants and their relatives) filled the roles of large herbivores such as hippos, camels, rhinos, and tapirs. The sirenians developed aquatic body plans and started spreading to other parts of the world by water (evolving convergently with the other groups of marine mammals such as cetaceans and pinnipeds). In addition to their similarity with Laurasian mammals in North America, Europe, and Asia, many afrotheres also exhibit convergent evolution with groups of mammals that evolved and lived exclusively in South America, which was also an island continent for much of the Cenozoic.

The common ancestry of these animals was not recognized until the late 1990s. [1] Historically, the Paenungulata had been linked to the true ungulates (particularly the Perissodactyls); the golden mole, tenrecs, and elephant shrews with the traditional (and polyphyletic/incorrect) taxon Insectivora; and the aardvarks with the pangolins and the xenarthrans within the invalid taxon Edentata. Continuing work on the molecular [2] [3] [4] and morphological [5] [6] [7] [8] diversity of afrotherian mammals has provided ever increasing support for their common ancestry.

Evolutionary relationships

The afrotherian clade was originally proposed in 1998 [1] based on analyses of DNA sequence data. However, previous studies had hinted at the close interrelationships among subsets of endemic African mammals; some of these studies date to the 1920s [9] and there were sporadic papers in the 1980s [10] and 1990s. [11] [12] [13] The core of the Afrotheria consists of the Paenungulata, i.e., elephants, sea cows, and hyraxes, a group with a long history among comparative anatomists. [14] [15] Hence, while DNA sequence data have proven essential to infer the existence of the Afrotheria as a whole, and while the Afroinsectiphilia (insectivoran-grade afrotheres including tenrecs, golden moles, sengis, and aardvarks) were not recognized as part of Afrotheria without DNA data, some precedent is found in the comparative anatomical literature for the idea that at least part of this group forms a clade. The Paleocene genus Ocepeia , which is the most completely-known Paleocene African mammal and the oldest afrotherian known from a complete skull, shares similarities with both Paenungulata and Afroinsectiphilia, and may help to characterize the ancestral body type of afrotherians. [16]

Since the 1990s, increasing molecular and anatomical data have been applied to the classification of animals. Both types of data support the idea that afrotherian mammals are descended from a single common ancestor to the exclusion of other mammals. On the anatomical side, features shared by most, if not all, afrotheres include high vertebral counts, [8] aspects of placental membrane formation, [17] the shape of the ankle bones, [6] [7] the relatively late eruption of the permanent dentition, [18] and undescended testicles remaining in the body near the kidneys. [19] The snout is unusually long and mobile in several Afrotherian species, and this was pointed out as a possible shared-derived character. [20] Studies of genomic data, including millions of aligned nucleotides sampled for a growing number of placental mammals, also support Afrotheria as a clade. [21] [22] Additionally, there might be some dental synapomorphies uniting afroinsectiphilians, if not afrotheres as a whole: p4 talonid and trigonid of similar breadth, a prominent p4 hypoconid, presence of a P4 metacone and absence of parastyles on M1–2. [7] [23]

Afrotheria is now recognized as one of the three major groups within the Eutheria (containing placental mammals). [24] Relations within the three cohorts, Afrotheria, Xenarthra, Boreoeutheria, and the identity of the placental root, remain somewhat controversial. [5]

Afrotheria as a clade has usually been discussed without a Linnaean rank, but has been assigned the rank of cohort, magnorder, and superorder. One reconstruction, which applies the molecular clock, proposes that the oldest split occurred between Afrotheria and the other two some 105 million years ago in the mid-Cretaceous, when the African continent was separated from other major land masses. [25] This idea is consistent with the fossil record of Xenarthra, which is restricted to South America (following recent consensus that Eurotamandua is not a xenarthran [26] ).

However, Afrotheria itself does not have a fossil record restricted to Africa, [27] and appears in fact to have evolved in the continent's isolation. [28] More recent, genomic-scale phylogenies favor the hypothesis that Afrotheria and Xenarthra comprise sister taxa at the base of the placental mammal radiation, suggesting an ancient Gondwanan clade of placental mammals. [29] A 2021 morphological study also proposed to render Meridiungulata polyphyletic and recognise most of its clades as part of a group called Sudamericungulata, closely related to hyraxes, while Litopterna remains a sister taxon to Perissodactyla. [30]

Relations between the various afrotherian orders are still being studied. On the basis of molecular studies, elephants and manatees appear to be related, and likewise elephant shrews and aardvarks. [31] These findings are compatible with the work of earlier anatomists. [14] [15]

Phylogeny

Phylogenetic position of afrotherians (in red) among placentals in a genus-level molecular phylogeny of 116 extant mammals inferred from the gene tree information of 14,509 coding DNA sequences. The other major clades are colored: marsupials (magenta), xenarthrans (orange), laurasiatherians (green), and euarchontoglires (blue). OrthoMaM v10b 2019 116genera circular tree.svg
Phylogenetic position of afrotherians (in red) among placentals in a genus-level molecular phylogeny of 116 extant mammals inferred from the gene tree information of 14,509 coding DNA sequences. The other major clades are colored: marsupials (magenta), xenarthrans (orange), laurasiatherians (green), and euarchontoglires (blue).
Afrotheria
A cladogram of Afrotheria based on molecular evidence [15]

Current status and distribution

Many extant members of Afrotheria appear to have a high risk of extinction (perhaps related to the large size of many). Species loss within this already small group would comprise a particularly great loss of genetic and evolutionary diversity. The IUCN Afrotheria Specialist Group notes that Afrotheria, as currently reconstructed, includes nearly a third of all mammalian orders currently found in Africa and Madagascar, but only 75 of more than 1,200 mammalian species in those areas. [33]

While most extant species assigned to Afrotheria live in Africa, some (such as the Indian elephant and three of the four sirenian species) occur elsewhere; many of these are also endangered. Prior to the Quaternary extinction event, proboscideans were present on every continent of the world except Australia and Antarctica. Hyraxes lived in much of Eurasia as recently as the end of the Pliocene. The extinct afrotherian orders of embrithopods and desmostylians were also once widely distributed. However, the desmostylians have recently been viewed as possible perissodactyls, rather than afrotheres, [34] although this is still controversial; [28] the taxonomic placement of embrithopods is also not clear. [35]

Classification

Afrotheria is a clade of placental mammals, the stem designation for which is Eutheria. Based on precedent, some clades are junior synonyms and arguably should be replaced. [36] [37]

See also

Notes

  1. 1 2 Stanhope, M. J.; Waddell, V. G.; Madsen, O.; de Jong, W.; Hedges, S. B.; Cleven, G. C.; Kao, D.; Springer, M. S. (1998). "Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals". Proceedings of the National Academy of Sciences. 95 (17): 9967–9972. Bibcode:1998PNAS...95.9967S. doi: 10.1073/pnas.95.17.9967 . PMC   21445 . PMID   9707584.
  2. Springer, Mark S.; Michael J. Stanhope; Ole Madsen; Wilfried W. de Jong (2004). "Molecules consolidate the placental mammal tree" (PDF). Trends in Ecology & Evolution. 19 (8): 430–438. doi:10.1016/j.tree.2004.05.006. PMID   16701301. S2CID   1508898.
  3. Robinson, T. J.; Fu, B.; Ferguson-Smith, M. A.; Yang, F. (2004). "Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora". Proceedings of the Royal Society B: Biological Sciences. 271 (1547): 1477–1484. doi:10.1098/rspb.2004.2754. PMC   1691750 . PMID   15306319.
  4. Nishihara, H.; Satta, Y.; Nikaido, M.; Thewissen, J.G.M.; Stanhope, M.J.; Okada, N. (2005). "A retroposon analysis of Afrotherian phylogeny". Molecular Biology and Evolution. 22 (9): 1823–1833. doi: 10.1093/molbev/msi179 . PMID   15930154.
  5. 1 2 Asher RJ, Bennett N, Lehmann T (2009). "The new framework for understanding placental mammal evolution". BioEssays. 31 (8): 853–864. doi: 10.1002/bies.200900053 . PMID   19582725.
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  7. 1 2 3 4 Seiffert, Erik R (2007). "A new estimate of afrotherian phylogeny based on simultaneous analysis of genomic, morphological, and fossil evidence". BMC Evolutionary Biology. 7 (1): 224. doi: 10.1186/1471-2148-7-224 . PMC   2248600 . PMID   17999766.
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  16. 1 2 Gheerbrant, Emmanuel; Amaghzaz, Mbarek; Bouya, Baadi; Goussard, Florent; Letenneur, Charlène (2014). "Ocepeia (Middle Paleocene of Morocco): The Oldest Skull of an Afrotherian Mammal". PLOS ONE. 9 (2): e89739. Bibcode:2014PLoSO...989739G. doi: 10.1371/journal.pone.0089739 . PMC   3935939 . PMID   24587000.
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  18. Asher, Robert J; Lehmann, Thomas (2008). "Dental eruption in afrotherian mammals". BMC Biology. 6 (1): 14. doi: 10.1186/1741-7007-6-14 . PMC   2292681 . PMID   18366669.
  19. Sharma, Virag; Lehmann, Thomas; Stuckas, Heiko; Funke, Liane; Hiller, Michael (2018). "Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals". PLOS Biology. 16 (6): e2005293. doi: 10.1371/journal.pbio.2005293 . ISSN   1545-7885. PMC   6023123 . PMID   29953435.
  20. Hedges, SB (2001). "Afrotheria: Plate tectonics meets genomics". Proc Natl Acad Sci U S A. 98 (1): 1–2. doi: 10.1073/pnas.98.1.1 . PMC   33345 . PMID   11136239.
  21. Murphy, W. J.; Pringle, T. H.; Crider, T. A.; Springer, M. S.; Miller, W. (2007). "Using genomic data to unravel the root of the placental mammal phylogeny". Genome Research. 17 (4): 413–421. doi:10.1101/gr.5918807. PMC   1832088 . PMID   17322288.
  22. Nikolaev, Sergey; Montoya-Burgos, Juan I.; Margulies, Elliott H.; NISC Comparative Sequencing Program; Rougemont, Jacques; Nyffeler, Bruno; Antonarakis, Stylianos E. (2007). "Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data". PLOS Genetics. 3 (1): e2. doi: 10.1371/journal.pgen.0030002 . PMC   1761045 . PMID   17206863.
  23. Cote S, Werdelin L, Seiffert ER, Barry JC (March 2007). "Additional material of the enigmatic Early Miocene mammal Kelba and its relationship to the order Ptolemaiida". Proc Natl Acad Sci USA. 104 (13): 5510–5. Bibcode:2007PNAS..104.5510C. doi: 10.1073/pnas.0700441104 . PMC   1838468 . PMID   17372202.
  24. William J. Murphy; Eduardo Eizirik; Mark S. Springer; et al. (14 December 2001). "Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics" (PDF). Science . 294 (5550): 2348–2351. Bibcode:2001Sci...294.2348M. doi:10.1126/science.1067179. PMID   11743200. S2CID   34367609. Archived from the original (PDF) on 27 March 2016. Retrieved 15 May 2014.
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  27. Zack S.P.; Penkrot T.A.; Bloch J.I.; Rose K.D. (2005). "Affinities of 'hyopsodontids' to elephant shrews and a Holarctic origin of Afrotheria" (PDF). Nature. 434 (7032): 497–501. Bibcode:2005Natur.434..497Z. doi:10.1038/nature03351. PMID   15791254. S2CID   4428738.
  28. 1 2 Gheerbrant, Emmanuel; Filippo, Andrea; Schmitt, Arnaud (2016). "Convergence of Afrotherian and Laurasiatherian Ungulate-Like Mammals: First Morphological Evidence from the Paleocene of Morocco". PLOS ONE. 11 (7): e0157556. Bibcode:2016PLoSO..1157556G. doi: 10.1371/journal.pone.0157556 . PMC   4934866 . PMID   27384169.
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  30. Avilla, Leonardo S.; Mothé, Dimila (2021). "Out of Africa: A New Afrotheria Lineage Rises From Extinct South American Mammals". Frontiers in Ecology and Evolution. 9. doi: 10.3389/fevo.2021.654302 . ISSN   2296-701X.
  31. Svartman, M.; Stanyon, R. (2012). "The Chromosomes of Afrotheria and Their Bearing on Mammalian Genome Evolution". Cytogenetic and Genome Research. 137 (2–4): 144–153. doi:10.1159/000341387. PMID   22868637. S2CID   24353318.
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  39. 1 2 Avilla, Leonardo S.; Mothé, Dimila (2021). "Out of Africa: A New Afrotheria Lineage Rises from Extinct South American Mammals". Frontiers in Ecology and Evolution. 9. doi: 10.3389/fevo.2021.654302 .

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The Afroinsectiphilia is a clade that has been proposed based on the results of recent molecular phylogenetic studies. Many of the taxa within it were once regarded as part of the order Insectivora, but Insectivora is now considered to be polyphyletic and obsolete. This proposed classification is based on molecular studies only, and there is no morphological evidence for it.

<span class="mw-page-title-main">Ferungulata</span> Clade of mammals comprising carnivorans, pangolins, artiodactyls and perissodactyls

Ferungulata is a grandorder of placental mammals that groups together mirorder Ferae and clade Pan-Euungulata. It has existed in two guises, a traditional one based on morphological analysis and a revised one taking into account more recent molecular analyses. The Fereungulata is a sister group to the order Chiroptera (bats) and together they make clade Scrotifera.

<span class="mw-page-title-main">Pseudoungulata</span>

Pseudoungulata, or "false hoofed mammals", is a possible clade made up of two subgroups, aardvarks and paenungulates. Before this group was proposed, it was thought that aardvarks were more closely related to xenarthrans. However, all of these mammals are now considered to be part of Afrotheria, which also includes elephant shrews and afrosoricidans. Other positions of aardvarks within Afrotheria are possible, such as being closest relatives of elephant shrews and/or afrosoricidans.

<i>Amblysomus</i> Genus of mammals

Amblysomus is a genus of the golden mole family, Chrysochloridae, comprising five species of the small, insect-eating, burrowing mammals endemic to Southern Africa. All five species can be found in South Africa and some are also found in Eswatini and Lesotho.

<span class="mw-page-title-main">Potamogalidae</span> Family of mammals

Potamogalidae is the family of "otter shrews", a group of semiaquatic riverine afrotherian mammals indigenous to sub-Saharan Africa. They are most closely related to the tenrecs of Madagascar, from which they are thought to have split about 47–53 million years ago. They were formerly considered a subfamily of Tenrecidae.

<span class="mw-page-title-main">Ptolemaiida</span> Extinct order of mammals

Ptolemaiida is a taxon of wolf-sized afrothere mammals that lived in northern and eastern Africa during the Paleogene. The oldest fossils are from the latest Eocene strata of the Jebel Qatrani Formation, near the Fayum oasis in Egypt. A tooth is known from an Oligocene-aged stratum in Angola, and Miocene specimens are known from Kenya and Uganda.

<span class="mw-page-title-main">Phenacodontidae</span> Family of mammals

Phenacodontidae is an extinct family of large herbivorous mammals traditionally placed in the “wastebasket taxon” Condylarthra, which may instead represent early-stage perissodactyls. They lived from the late early Paleocene to early middle Eocene and their fossil remains have been found in North America and Europe. The only unequivocal Asian phenacodontid is Lophocion asiaticus.

<i>Ocepeia</i> Extinct Afrotherian mammal

Ocepeia is an extinct genus of afrotherian mammal that lived in present-day Morocco during the middle Paleocene epoch, approximately 60 million years ago. First named and described in 2001, the type species is O. daouiensis from the Selandian stage of Morocco's Ouled Abdoun Basin. A second, larger species, O. grandis, is known from the Thanetian, a slightly younger stage in the same area. In life, the two species are estimated to have weighed about 3.5 kg (7.7 lb) and 10 kg (22 lb), respectively, and are believed to have been specialized leaf-eaters. The fossil skulls of Ocepeia are the oldest known afrotherian skulls, and the best-known of any Paleocene mammal in Africa.

<span class="mw-page-title-main">Paenungulatomorpha</span> Clade of mammals

Paenungulatomorpha is a clade of afrotherian mammals that can be characterized according to Gheerbrant et al. (2016):

by a mandibular retromolar fossa, the absence of hypocone, an ectoloph selenodont and linked to strong styles such as mesostyle in basal taxa, and a more or less developed pseudohypocone.

References